| Next changeset 1:ce94ba22a3b3 (2012-03-31) |
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Commit message:
Uploaded |
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added:
bed_collapse.xml |
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| diff -r 000000000000 -r 082c1e8ff413 bed_collapse.xml --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/bed_collapse.xml Sat Mar 31 13:25:22 2012 -0400 |
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| @@ -0,0 +1,19 @@ +<tool id="bed_collapse" name="bed_collapse"> + <description>collapse intervals</description> + <command interpreter="python">bed_collapse.py $input $strand $score > $outfile </command> + <inputs> + <param name="input" format="interval" type="data" label="Original file"/> + <param name="strand" size="10" type="integer" value="6" label="strand column" help="set 0 to ignore strand information" /> + <param name="score" size="10" type="integer" value="5" label="for duplicate lines, keep the one with max value in column" help="set 0 to ignore score information" /> + </inputs> + <outputs> + <data format="input" name="outfile" /> + </outputs> + <help> + +**What it does** + +This tool collapses genomic intervals that have the same position (and strandness if specified) and output a set of unique intervals. + + </help> +</tool> |