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Commit message:
planemo upload for repository https://github.com/workflow4metabolomics/xcms commit d481a27556155e3587901d702d364b71f28e30b9 |
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modified:
msnbase_readmsdata.xml |
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| diff -r 2a69f9923a70 -r 32c20be7002f msnbase_readmsdata.xml --- a/msnbase_readmsdata.xml Mon Feb 11 05:48:13 2019 -0500 +++ b/msnbase_readmsdata.xml Thu Mar 07 07:35:39 2019 -0500 |
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| @@ -61,7 +61,7 @@ </assert_stdout> </test> <!-- DISABLE FOR TRAVIS - Useful to generate test-data for the further steps--> + Useful to generate test-data for the further steps <test> <param name="input" value="ko16.CDF" ftype="netcdf" /> <assert_stdout> @@ -86,7 +86,7 @@ <has_text text="./wt16.CDF wt16 ." /> </assert_stdout> </test> - <!-- --> + --> </tests> <help><![CDATA[ @@ -132,7 +132,7 @@ xcms.findChromPeaks ``*``.raw.RData rdata.msnbase.raw =========================== ==================== ==================== - + **Example of a metabolomic workflow** @@ -158,7 +158,7 @@ You have two methods for your inputs: - | Single file (recommended): You can put a single file as input. That way, you will be able to launch several readMSData and findChromPeaks in parallel and use "findChromPeaks Merger" before groupChromPeaks. + | Single file (recommended): You can put a single file as input. That way, you will be able to launch several readMSData and findChromPeaks in parallel and use "findChromPeaks Merger" before groupChromPeaks. | Zip file: You can put a zip file containing your inputs: myinputs.zip (containing all your conditions as sub-directories). Zip file: Steps for creating the zip file @@ -223,7 +223,7 @@ | Tabular file that contains for each sample its associated class and polarity (positive,negative and mixed). | This file is necessary in further steps of the workflow, as the Anova and PCA steps for example. - | You get a sampleMetadata.tsv only if you use a zip. Otherwise, you have to provide one for the findChromPeaks Merger step. + | You get a sampleMetadata.tsv only if you use a zip. Otherwise, you have to provide one for the findChromPeaks Merger step. --------------------------------------------------- |