| Previous changeset 7:d7a7ef786fbe (2019-03-12) Next changeset 9:a874afcb71ca (2019-04-29) |
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Commit message:
planemo upload for repository https://github.com/workflow4metabolomics/xcms commit 8ed93601e09e1db2fbaef5af29d58464b639f2a8 |
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modified:
macros_msnbase.xml msnbase_readmsdata.r msnbase_readmsdata.xml |
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added:
README.rst |
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| diff -r d7a7ef786fbe -r b6ef94529e50 README.rst --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/README.rst Tue Apr 09 12:10:17 2019 -0400 |
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| @@ -0,0 +1,11 @@ + +Changelog/News +-------------- + +**Version 2.8.2.0 - 08/04/2019** + +- UPGRADE: upgrade the MSnbase version from 2.4.0 to 2.8.2 (see MSnbase News_). Almost all the new features may not concern our usage of MSnbase. + +**Version 2.4.0.0 - 29/03/2018** + +- NEW: a new dedicated tool to read the raw data. This function was previously included in xcms.findChromPeaks. This way, you will now be able to display TICs and BPCs before xcms.findChromPeaks. |
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| diff -r d7a7ef786fbe -r b6ef94529e50 macros_msnbase.xml --- a/macros_msnbase.xml Tue Mar 12 10:58:41 2019 -0400 +++ b/macros_msnbase.xml Tue Apr 09 12:10:17 2019 -0400 |
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| @@ -1,6 +1,6 @@ <?xml version="1.0"?> <macros> - <token name="@WRAPPER_VERSION@">2.4.0</token> + <token name="@WRAPPER_VERSION@">2.8.2</token> <xml name="requirements"> <requirements> <requirement type="package" version="@WRAPPER_VERSION@">bioconductor-msnbase</requirement> |
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| diff -r d7a7ef786fbe -r b6ef94529e50 msnbase_readmsdata.r --- a/msnbase_readmsdata.r Tue Mar 12 10:58:41 2019 -0400 +++ b/msnbase_readmsdata.r Tue Apr 09 12:10:17 2019 -0400 |
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| @@ -91,7 +91,7 @@ cat("\n\n") #saving R data in .Rdata file to save the variables used in the present tool -objects2save <- c("raw_data", "zipfile", "singlefile", "md5sumList", "sampleNamesList", "chromTIC", "chromBPI") +objects2save <- c("raw_data", "zipfile", "singlefile", "md5sumList", "sampleNamesList") #, "chromTIC", "chromBPI") save(list=objects2save[objects2save %in% ls()], file="readmsdata.RData") |
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| diff -r d7a7ef786fbe -r b6ef94529e50 msnbase_readmsdata.xml --- a/msnbase_readmsdata.xml Tue Mar 12 10:58:41 2019 -0400 +++ b/msnbase_readmsdata.xml Tue Apr 09 12:10:17 2019 -0400 |
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| @@ -42,7 +42,7 @@ <has_text text="rowNames: faahKO_reduce/KO/ko15.CDF faahKO_reduce/KO/ko16.CDF" /> <has_text text="faahKO_reduce/WT/wt15.CDF faahKO_reduce/WT/wt16.CDF" /> <has_text text="featureNames: F1.S0001 F1.S0002 ... F4.S1278 (5112 total)" /> - <has_text text="fvarLabels: fileIdx spIdx ... spectrum (27 total)" /> + <has_text text="fvarLabels: fileIdx spIdx ... spectrum (28 total)" /> <has_text text="faahKO_reduce/KO/ko15.CDF ko15 KO" /> <has_text text="faahKO_reduce/KO/ko16.CDF ko16 KO" /> <has_text text="faahKO_reduce/WT/wt15.CDF wt15 WT" /> @@ -56,7 +56,7 @@ <has_text text="rowNames: ./ko15.CDF" /> <has_text text="ko15.CDF" /> <has_text text="featureNames: F1.S0001 F1.S0002 ... F1.S1278 (1278 total)" /> - <has_text text="fvarLabels: fileIdx spIdx ... spectrum (27 total)" /> + <has_text text="fvarLabels: fileIdx spIdx ... spectrum (28 total)" /> <has_text text="./ko15.CDF ko15 ." /> </assert_stdout> </test> @@ -230,6 +230,11 @@ Changelog/News -------------- +.. _News: https://bioconductor.org/packages/release/bioc/news/MSnbase/NEWS + +**Version 2.8.2.0 - 08/04/2019** + +- UPGRADE: upgrade the MSnbase version from 2.4.0 to 2.8.2 (see MSnbase News_). Almost all the new features may not concern our usage of MSnbase. **Version 2.4.0.0 - 29/03/2018** |