Repository 'bismark'
hg clone https://toolshed.g2.bx.psu.edu/repos/bgruening/bismark

Changeset 12:78c791a11b4c (2019-06-05)
Previous changeset 11:1f15ad5ca867 (2019-05-02) Next changeset 13:f211753166bd (2019-07-30)
Commit message:
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/bismark commit 8a26d7022e3535d995aec277e15d7d04800965e4
modified:
bismark_methylation_extractor.xml
b
diff -r 1f15ad5ca867 -r 78c791a11b4c bismark_methylation_extractor.xml
--- a/bismark_methylation_extractor.xml Thu May 02 18:27:38 2019 -0400
+++ b/bismark_methylation_extractor.xml Wed Jun 05 07:44:26 2019 -0400
[
@@ -46,7 +46,7 @@
         #if $cytosine_report['cytosine_report_selector']:
           --cytosine_report '$output_cytosine_report'
           #if $cytosine_report.refGenomeSource.genomeSource == "built_in_fasta":
-            --genome_file '{cytosine_report.refGenomeSource.built_in_fasta.fields.path}'
+            --genome_file '${cytosine_report.refGenomeSource.built_in_fasta.fields.path}'
           #else:
             --genome_file '$cytosine_report.refGenomeSource["own_file"]'
           #end if