Repository 'samtools_depth'
hg clone https://toolshed.g2.bx.psu.edu/repos/iuc/samtools_depth

Changeset 0:090651229eba (2018-10-14)
Next changeset 1:44de678a44c4 (2018-10-15)
Commit message:
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools/samtools_depth commit b75040a9832972a60a964bc5a35da029d2bcf86c
added:
macros.xml
samtools_depth.xml
test-data/eboVir3.1.bed
test-data/eboVir3.2.bam
test-data/eboVir3.2.bed
test-data/eboVir3.bam
test-data/samtools_depth_out1.tab
test-data/samtools_depth_out2.tab
test-data/samtools_depth_out3.tab
test-data/samtools_depth_out4.tab
b
diff -r 000000000000 -r 090651229eba macros.xml
--- /dev/null Thu Jan 01 00:00:00 1970 +0000
+++ b/macros.xml Sun Oct 14 19:14:57 2018 -0400
[
b'@@ -0,0 +1,172 @@\n+<macros>\n+    <xml name="requirements">\n+        <requirements>\n+            <requirement type="package" version="@TOOL_VERSION@">samtools</requirement>\n+            <yield/>\n+        </requirements>\n+    </xml>\n+    <token name="@TOOL_VERSION@">1.9</token>\n+    <token name="@FLAGS@">#set $flags = sum(map(int, str($filter).split(\',\')))</token>\n+    <token name="@PREPARE_IDX@"><![CDATA[\n+        ##prepare input and indices \n+        ln -s \'$input\' infile &&\n+        #if $input.is_of_type(\'bam\'):\n+            #if str( $input.metadata.bam_index ) != "None":\n+                ln -s \'${input.metadata.bam_index}\' infile.bai &&\n+            #else:\n+                samtools index infile infile.bai &&\n+            #end if\n+        #elif $input.is_of_type(\'cram\'):\n+            #if str( $input.metadata.cram_index ) != "None":\n+                ln -s \'${input.metadata.cram_index}\' infile.crai &&\n+            #else:\n+                samtools index infile infile.crai &&\n+            #end if\n+        #end if\n+    ]]></token>\n+    <token name="@PREPARE_IDX_MULTIPLE@"><![CDATA[\n+        ##prepare input and indices \n+        #for $i, $bam in enumerate( $input_bams ):\n+            ln -s \'$bam\' \'${i}\' &&\n+            #if $bam.is_of_type(\'bam\'):\n+                #if str( $bam.metadata.bam_index ) != "None":\n+                    ln -s \'${bam.metadata.bam_index}\' \'${i}.bai\' &&\n+                #else:\n+                    samtools index \'${i}\' \'${i}.bai\' &&\n+                #end if\n+            #elif $bam.is_of_type(\'cram\'):\n+                #if str( $bam.metadata.cram_index ) != "None":\n+                    ln -s \'${bam.metadata.cram_index}\' \'${i}.crai\' &&\n+                #else:\n+                    samtools index \'${i}\' \'${i}.crai\' &&\n+                #end if\n+            #end if\n+        #end for\n+    ]]></token>\n+    <token name="@PREPARE_FASTA_IDX@"><![CDATA[\n+        ##checks for reference data ($addref_cond.addref_select=="history" or =="cached")\n+        ##and sets the -t/-T parameters accordingly:\n+        ##- in case of history a symbolic link is used because samtools (view) will generate\n+        ##  the index which might not be possible in the directory containing the fasta file\n+        ##- in case of cached the absolute path is used which allows to read the cram file\n+        ##  without specifying the reference\n+        #if $addref_cond.addref_select == "history":\n+            ln -s \'${addref_cond.ref}\' reference.fa &&\n+            samtools faidx reference.fa &&\n+            #set reffa="reference.fa"\n+            #set reffai="reference.fa.fai"\n+        #elif $addref_cond.addref_select == "cached":\n+            #set reffa=str($addref_cond.ref.fields.path)\n+            #set reffai=str($addref_cond.ref.fields.path)+".fai"\n+        #else\n+            #set reffa=None\n+            #set reffai=None\n+        #end if\n+    ]]></token>\n+    <token name="@ADDTHREADS@"><![CDATA[\n+        ##compute the number of ADDITIONAL threads to be used by samtools (-@)\n+        addthreads=\\${GALAXY_SLOTS:-1} && (( addthreads-- )) &&\n+    ]]></token>\n+    <token name="@ADDMEMORY@"><![CDATA[\n+        ##compute the number of memory available to samtools sort (-m)\n+        ##use only 75% of available: https://github.com/samtools/samtools/issues/831\n+        addmemory=\\${GALAXY_MEMORY_MB_PER_SLOT:-768} && \n+        ((addmemory=addmemory*75/100)) &&\n+    ]]></token>\n+    <xml name="seed_input">\n+       <param name="seed" type="integer" optional="True" label="Seed for random number generator" help="If empty a random seed is used." /> \n+    </xml>\n+    <xml name="flag_options">\n+        <option value="1">read is paired</option>\n+        <option value="2">read is mapped in a proper pair</option>\n+        <option value="4">read is unmapped</option>\n+        <option value="8">mate is unmapped</option>\n+        <option value="16">read reverse strand</option>\n+        <option value="32">mate reverse strand</option>\n+        <option value="64">read is the'..b'on>\n+        <option value="1024">read is a PCR or optical duplicate</option>\n+        <option value="2048">supplementary alignment</option>\n+    </xml>\n+\n+    <!-- region specification macros and tokens for tools that allow the specification \n+         of region by bed file / space separated list of regions -->\n+    <token name="@REGIONS_FILE@"><![CDATA[\n+        #if $cond_region.select_region == \'tab\':\n+            -t \'$cond_region.targetregions\'\n+        #end if\n+    ]]></token>\n+    <token name="@REGIONS_MANUAL@"><![CDATA[\n+        #if $cond_region.select_region == \'text\':\n+            #for $i, $x in enumerate($cond_region.regions_repeat):\n+               \'${x.region}\'\n+            #end for\n+        #end if\n+    ]]></token>\n+    <xml name="regions_macro">\n+        <conditional name="cond_region">\n+            <param name="select_region" type="select" label="Filter by regions" help="restricts output to only those alignments which overlap the specified region(s)">\n+                <option value="no" selected="True">No</option>\n+                <option value="text">Manualy specify regions</option>\n+                <option value="tab">Regions from tabular file</option>\n+            </param>\n+            <when value="no"/>\n+            <when value="text">\n+                <repeat name="regions_repeat" min="1" default="1" title="Regions">\n+                    <param name="region" type="text" label="region" help="format chr:from-to">\n+                        <validator type="regex" message="Required format: CHR[:FROM[-TO]]; where CHR: string containing any character except quotes, whitespace and colon; FROM and TO: any integer">^[^\\s\'\\":]+(:\\d+(-\\d+){0,1}){0,1}$</validator>\n+                    </param>\n+                </repeat>\n+            </when>\n+            <when value="tab">\n+                <param name="targetregions" argument="-t/--target-regions" type="data" format="tabular" label="Target regions file" help="Do stats in these regions only. Tab-delimited file chr,from,to (1-based, inclusive)" />\n+            </when>\n+        </conditional>\n+    </xml>\n+\n+    <xml name="citations">\n+        <citations>\n+            <citation type="bibtex">\n+                @misc{SAM_def,\n+                title={Definition of SAM/BAM format},\n+                url = {https://samtools.github.io/hts-specs/},}\n+            </citation>\n+            <citation type="doi">10.1093/bioinformatics/btp352</citation>\n+            <citation type="doi">10.1093/bioinformatics/btr076</citation>\n+            <citation type="doi">10.1093/bioinformatics/btr509</citation>\n+            <citation type="bibtex">\n+                @misc{Danecek_et_al,\n+                Author={Danecek, P., Schiffels, S., Durbin, R.},\n+                title={Multiallelic calling model in bcftools (-m)},\n+                url = {http://samtools.github.io/bcftools/call-m.pdf},}\n+            </citation>\n+            <citation type="bibtex">\n+                @misc{Durbin_VCQC,\n+                Author={Durbin, R.},\n+                title={Segregation based metric for variant call QC},\n+                url = {http://samtools.github.io/bcftools/rd-SegBias.pdf},}\n+            </citation>\n+            <citation type="bibtex">\n+                @misc{Li_SamMath,\n+                Author={Li, H.},\n+                title={Mathematical Notes on SAMtools Algorithms},\n+                url = {http://www.broadinstitute.org/gatk/media/docs/Samtools.pdf},}\n+            </citation>\n+            <citation type="bibtex">\n+                @misc{SamTools_github,\n+                title={SAMTools GitHub page},\n+                url = {https://github.com/samtools/samtools},}\n+            </citation>\n+        </citations>\n+    </xml>\n+    <xml name="version_command">\n+        <version_command><![CDATA[samtools 2>&1 | grep Version]]></version_command>\n+    </xml>\n+    <xml name="stdio">\n+        <stdio>\n+            <exit_code range="1:" level="fatal" description="Error" />\n+        </stdio>\n+    </xml>\n+</macros>\n'
b
diff -r 000000000000 -r 090651229eba samtools_depth.xml
--- /dev/null Thu Jan 01 00:00:00 1970 +0000
+++ b/samtools_depth.xml Sun Oct 14 19:14:57 2018 -0400
[
@@ -0,0 +1,114 @@
+<tool id="samtools_depth" name="Samtools depth" version="1.8">
+    <description>compute the depth at each position or region</description>
+    <macros>
+        <import>macros.xml</import>
+    </macros>
+    <expand macro="requirements"/>
+    <expand macro="stdio"/>
+    <expand macro="version_command"/>
+    <command><![CDATA[
+## create symlinks to bams and index files (0,..., n-1 + 0.[bai|crai],...,n-1.[bai|crai] )
+@PREPARE_IDX_MULTIPLE@
+
+samtools depth
+$all
+#if $cond_region.select_region == 'bed':
+    -b '$cond_region.input_bed'
+#else if $cond_region.select_region == 'text':
+    -r $cond_region.region
+#end if
+#if str($minlength) != '':
+    -l $minlength
+#end if
+#if str($maxdepth) != '':
+    -m $maxdepth
+#end if
+#if str($basequality) != '':
+    -q $basequality
+#end if
+#if str($mapquality) != '':
+    -Q $mapquality
+#end if
+#for $i in range(len( $input_bams )):
+    ${i}
+#end for
+> '${output}'
+    ]]></command>
+    <inputs>
+        <param name="input_bams" type="data" format="bam" multiple="true" label="BAM file(s)" />
+        <conditional name="cond_region">
+            <param name="select_region" type="select" label="Filter by regions">
+                <option value="no" selected="True">No</option>
+                <option value="text">Manualy specify a region</option>
+                <option value="bed">Regions from BED file</option>
+            </param>
+            <when value="no"/>
+            <when value="text">
+                <param name="region" type="text" optional="false" argument="-r" label="Only report depth in a specified region" help="Format is CHROMOSOME:FROM-TO"/>
+            </when>
+            <when value="bed">
+                <param name="input_bed" type="data" format="bed" argument="-b" label="Genomic intervals (in BED format)" help="Compute depth at list of positions or regions in specified BED FILE." />
+            </when>
+        </conditional>
+
+        <param name="all" type="select" argument="-a/-aa" label="Output all positions" help="Note that if the all option (-a) is used in conjunction with a BED file it may sometimes operate as if -aa was specified if the reference sequence has coverage outside of the region specified in the BED file.">
+            <option value="" selected="True">Default</option>
+            <option value="-a">Output all positions (including those with zero depth) (-a)</option>
+            <option value="-aa">Output absolutely all positions, including unused reference sequences. (-aa)</option>
+        </param>
+        <param name="minlength" type="integer" argument="-l" min="0" optional="true" label="Ignore reads shorter than" />
+        <param name="maxdepth" type="integer" argument="-m" min="0" optional="true" label="Limits the maximum number of considered alignments starting at any sequence position to INT. Note that, the reported depths values might be larger than INT. If 0, depth is set to the maximum integer value, effectively removing any depth limit. (default = 8000)" />
+
+        <param name="basequality" type="integer" argument="-q" min="0" optional="true" label="Only count reads with base quality greater than" />
+        <param name="mapquality" type="integer" argument="-Q" min="0" optional="true" label="Only count reads with mapping quality greater than" />
+    </inputs>
+    <outputs>
+        <data name="output" format="tabular" label="${tool.name} on ${on_string}" />
+    </outputs>
+    <tests>
+        <test>
+            <conditional name="cond_region">
+                <param name="select_region" value="bed"/>
+                <param name="input_bed" value="eboVir3.1.bed" ftype="bed" />
+            </conditional>
+            <param name="input_bams" value="eboVir3.bam" ftype="bam" />
+            <output name="output" file="samtools_depth_out1.tab" />
+        </test>
+        <test>
+            <conditional name="cond_region">
+                <param name="select_region" value="text"/>
+                <param name="region" value="eboVir3:500-1500" />
+            </conditional>
+            <param name="input_bams" value="eboVir3.bam" ftype="bam" />
+            <output name="output" file="samtools_depth_out2.tab" />
+        </test>
+        <test>
+            <param name="input_bams" value="eboVir3.bam,eboVir3.2.bam" ftype="bam" />
+            <param name="all" value="-a"/>
+            <output name="output" file="samtools_depth_out3.tab" />
+        </test>
+        <test>
+            <param name="input_bams" value="eboVir3.bam,eboVir3.2.bam" ftype="bam" />
+            <param name="minlength" value="10" />
+            <!-- Odd thing: I did not expect values > 4 in the output, but there are ... ?
+             see https://github.com/samtools/samtools/issues/889 -->
+            <param name="maxdepth" value="4" />
+            <param name="basequality" value="11"  />
+            <param name="mapquality" value="12" />
+            <output name="output" file="samtools_depth_out4.tab" />
+        </test>
+    </tests>
+    <help>
+**What it does**
+
+Computes the depth at each position or region using the ``samtools depth`` command.
+
+The output is a tabular file, with one line for each base of each reference
+with any coverage (bases with no coverage may not appear).
+
+The first column is the reference name, the second column is the reference
+position, and then there is one column for each SAM/BAM file giving the
+coverage depth at that position.
+    </help>
+    <expand macro="citations"/>
+</tool>
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diff -r 000000000000 -r 090651229eba test-data/eboVir3.1.bed
--- /dev/null Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/eboVir3.1.bed Sun Oct 14 19:14:57 2018 -0400
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@@ -0,0 +1,3 @@
+eboVir3 500 1500
+eboVir3 1500 2000
+eboVir3 1500 3000
b
diff -r 000000000000 -r 090651229eba test-data/eboVir3.2.bam
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diff -r 000000000000 -r 090651229eba test-data/eboVir3.2.bed
--- /dev/null Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/eboVir3.2.bed Sun Oct 14 19:14:57 2018 -0400
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@@ -0,0 +1,3 @@
+eboVir3 500 1500
+eboVir3 1500 2000
+eboVir3 1500 3000
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diff -r 000000000000 -r 090651229eba test-data/eboVir3.bam
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Binary file test-data/eboVir3.bam has changed
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diff -r 000000000000 -r 090651229eba test-data/samtools_depth_out1.tab
--- /dev/null Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/samtools_depth_out1.tab Sun Oct 14 19:14:57 2018 -0400
b
b'@@ -0,0 +1,2500 @@\n+eboVir3\t501\t5\n+eboVir3\t502\t6\n+eboVir3\t503\t6\n+eboVir3\t504\t6\n+eboVir3\t505\t6\n+eboVir3\t506\t6\n+eboVir3\t507\t6\n+eboVir3\t508\t6\n+eboVir3\t509\t6\n+eboVir3\t510\t7\n+eboVir3\t511\t7\n+eboVir3\t512\t7\n+eboVir3\t513\t7\n+eboVir3\t514\t7\n+eboVir3\t515\t7\n+eboVir3\t516\t7\n+eboVir3\t517\t7\n+eboVir3\t518\t7\n+eboVir3\t519\t7\n+eboVir3\t520\t7\n+eboVir3\t521\t7\n+eboVir3\t522\t7\n+eboVir3\t523\t7\n+eboVir3\t524\t7\n+eboVir3\t525\t7\n+eboVir3\t526\t6\n+eboVir3\t527\t7\n+eboVir3\t528\t6\n+eboVir3\t529\t7\n+eboVir3\t530\t7\n+eboVir3\t531\t7\n+eboVir3\t532\t7\n+eboVir3\t533\t7\n+eboVir3\t534\t7\n+eboVir3\t535\t7\n+eboVir3\t536\t7\n+eboVir3\t537\t7\n+eboVir3\t538\t8\n+eboVir3\t539\t8\n+eboVir3\t540\t8\n+eboVir3\t541\t8\n+eboVir3\t542\t8\n+eboVir3\t543\t8\n+eboVir3\t544\t8\n+eboVir3\t545\t8\n+eboVir3\t546\t8\n+eboVir3\t547\t8\n+eboVir3\t548\t8\n+eboVir3\t549\t8\n+eboVir3\t550\t8\n+eboVir3\t551\t8\n+eboVir3\t552\t9\n+eboVir3\t553\t9\n+eboVir3\t554\t9\n+eboVir3\t555\t8\n+eboVir3\t556\t8\n+eboVir3\t557\t8\n+eboVir3\t558\t8\n+eboVir3\t559\t8\n+eboVir3\t560\t8\n+eboVir3\t561\t8\n+eboVir3\t562\t8\n+eboVir3\t563\t8\n+eboVir3\t564\t6\n+eboVir3\t565\t6\n+eboVir3\t566\t6\n+eboVir3\t567\t6\n+eboVir3\t568\t6\n+eboVir3\t569\t6\n+eboVir3\t570\t6\n+eboVir3\t571\t7\n+eboVir3\t572\t6\n+eboVir3\t573\t6\n+eboVir3\t574\t6\n+eboVir3\t575\t7\n+eboVir3\t576\t7\n+eboVir3\t577\t7\n+eboVir3\t578\t8\n+eboVir3\t579\t8\n+eboVir3\t580\t8\n+eboVir3\t581\t8\n+eboVir3\t582\t9\n+eboVir3\t583\t9\n+eboVir3\t584\t9\n+eboVir3\t585\t9\n+eboVir3\t586\t9\n+eboVir3\t587\t9\n+eboVir3\t588\t9\n+eboVir3\t589\t9\n+eboVir3\t590\t9\n+eboVir3\t591\t9\n+eboVir3\t592\t10\n+eboVir3\t593\t10\n+eboVir3\t594\t12\n+eboVir3\t595\t12\n+eboVir3\t596\t12\n+eboVir3\t597\t11\n+eboVir3\t598\t12\n+eboVir3\t599\t11\n+eboVir3\t600\t11\n+eboVir3\t601\t11\n+eboVir3\t602\t11\n+eboVir3\t603\t11\n+eboVir3\t604\t11\n+eboVir3\t605\t11\n+eboVir3\t606\t11\n+eboVir3\t607\t11\n+eboVir3\t608\t10\n+eboVir3\t609\t10\n+eboVir3\t610\t10\n+eboVir3\t611\t10\n+eboVir3\t612\t10\n+eboVir3\t613\t10\n+eboVir3\t614\t10\n+eboVir3\t615\t10\n+eboVir3\t616\t10\n+eboVir3\t617\t10\n+eboVir3\t618\t10\n+eboVir3\t619\t10\n+eboVir3\t620\t10\n+eboVir3\t621\t11\n+eboVir3\t622\t10\n+eboVir3\t623\t10\n+eboVir3\t624\t10\n+eboVir3\t625\t10\n+eboVir3\t626\t10\n+eboVir3\t627\t10\n+eboVir3\t628\t11\n+eboVir3\t629\t12\n+eboVir3\t630\t12\n+eboVir3\t631\t12\n+eboVir3\t632\t12\n+eboVir3\t633\t12\n+eboVir3\t634\t12\n+eboVir3\t635\t12\n+eboVir3\t636\t12\n+eboVir3\t637\t12\n+eboVir3\t638\t12\n+eboVir3\t639\t12\n+eboVir3\t640\t12\n+eboVir3\t641\t11\n+eboVir3\t642\t11\n+eboVir3\t643\t11\n+eboVir3\t644\t11\n+eboVir3\t645\t10\n+eboVir3\t646\t10\n+eboVir3\t647\t11\n+eboVir3\t648\t10\n+eboVir3\t649\t10\n+eboVir3\t650\t9\n+eboVir3\t651\t9\n+eboVir3\t652\t8\n+eboVir3\t653\t8\n+eboVir3\t654\t8\n+eboVir3\t655\t8\n+eboVir3\t656\t8\n+eboVir3\t657\t8\n+eboVir3\t658\t9\n+eboVir3\t659\t9\n+eboVir3\t660\t9\n+eboVir3\t661\t9\n+eboVir3\t662\t8\n+eboVir3\t663\t8\n+eboVir3\t664\t6\n+eboVir3\t665\t7\n+eboVir3\t666\t7\n+eboVir3\t667\t7\n+eboVir3\t668\t6\n+eboVir3\t669\t6\n+eboVir3\t670\t7\n+eboVir3\t671\t7\n+eboVir3\t672\t7\n+eboVir3\t673\t8\n+eboVir3\t674\t8\n+eboVir3\t675\t9\n+eboVir3\t676\t10\n+eboVir3\t677\t10\n+eboVir3\t678\t10\n+eboVir3\t679\t10\n+eboVir3\t680\t11\n+eboVir3\t681\t11\n+eboVir3\t682\t11\n+eboVir3\t683\t11\n+eboVir3\t684\t11\n+eboVir3\t685\t11\n+eboVir3\t686\t11\n+eboVir3\t687\t11\n+eboVir3\t688\t11\n+eboVir3\t689\t11\n+eboVir3\t690\t11\n+eboVir3\t691\t10\n+eboVir3\t692\t10\n+eboVir3\t693\t10\n+eboVir3\t694\t10\n+eboVir3\t695\t10\n+eboVir3\t696\t10\n+eboVir3\t697\t10\n+eboVir3\t698\t9\n+eboVir3\t699\t8\n+eboVir3\t700\t9\n+eboVir3\t701\t9\n+eboVir3\t702\t9\n+eboVir3\t703\t9\n+eboVir3\t704\t9\n+eboVir3\t705\t9\n+eboVir3\t706\t9\n+eboVir3\t707\t9\n+eboVir3\t708\t9\n+eboVir3\t709\t9\n+eboVir3\t710\t9\n+eboVir3\t711\t9\n+eboVir3\t712\t9\n+eboVir3\t713\t10\n+eboVir3\t714\t10\n+eboVir3\t715\t10\n+eboVir3\t716\t10\n+eboVir3\t717\t9\n+eboVir3\t718\t9\n+eboVir3\t719\t9\n+eboVir3\t720\t9\n+eboVir3\t721\t9\n+eboVir3\t722\t9\n+eboVir3\t723\t9\n+eboVir3\t724\t9\n+eboVir3\t725\t9\n+eboVir3\t726\t9\n+eboVir3\t727\t9\n+eboVir3\t728\t8\n+eboVir3\t729\t8\n+eboVir3\t730\t10\n+eboVir3\t731\t10\n+eboVir3\t732\t10\n+eboVir3\t733\t11\n+eboVir3\t734\t11\n+eboVir3\t735\t10\n+eboVir3\t736\t10\n+eboVir3\t737\t10\n+eboVir3\t738\t10\n+eboVir3\t739\t10\n+eboVir3\t740\t9\n+eboVir3\t741\t9\n+eboVir3\t742\t9\n+eboVir3\t743\t8\n+eboVir3\t744\t8\n+eboVir3\t745\t7\n+eboVir3\t746\t6\n+eboVir3\t747\t6\n+eboVir3\t748\t6\n+eboVir3\t749\t6\n+eboVir3\t750\t5\n+eboVir3\t751\t6\n+eboVir3\t752\t6\n+eboVir3\t753\t6\n+eboVir3\t754\t6\n+eboVir3\t755\t6\n+eboVir3\t756\t6\n+eboVir3\t757\t6\n+eboVir3\t758\t6\n+eboVir3\t759\t6\n+'..b'52\t8\n+eboVir3\t2753\t9\n+eboVir3\t2754\t9\n+eboVir3\t2755\t9\n+eboVir3\t2756\t9\n+eboVir3\t2757\t9\n+eboVir3\t2758\t9\n+eboVir3\t2759\t10\n+eboVir3\t2760\t10\n+eboVir3\t2761\t10\n+eboVir3\t2762\t11\n+eboVir3\t2763\t11\n+eboVir3\t2764\t11\n+eboVir3\t2765\t11\n+eboVir3\t2766\t11\n+eboVir3\t2767\t11\n+eboVir3\t2768\t11\n+eboVir3\t2769\t11\n+eboVir3\t2770\t11\n+eboVir3\t2771\t10\n+eboVir3\t2772\t9\n+eboVir3\t2773\t9\n+eboVir3\t2774\t9\n+eboVir3\t2775\t9\n+eboVir3\t2776\t9\n+eboVir3\t2777\t9\n+eboVir3\t2778\t9\n+eboVir3\t2779\t9\n+eboVir3\t2780\t9\n+eboVir3\t2781\t10\n+eboVir3\t2782\t10\n+eboVir3\t2783\t10\n+eboVir3\t2784\t10\n+eboVir3\t2785\t10\n+eboVir3\t2786\t10\n+eboVir3\t2787\t10\n+eboVir3\t2788\t10\n+eboVir3\t2789\t10\n+eboVir3\t2790\t10\n+eboVir3\t2791\t9\n+eboVir3\t2792\t9\n+eboVir3\t2793\t9\n+eboVir3\t2794\t10\n+eboVir3\t2795\t10\n+eboVir3\t2796\t10\n+eboVir3\t2797\t9\n+eboVir3\t2798\t8\n+eboVir3\t2799\t8\n+eboVir3\t2800\t8\n+eboVir3\t2801\t8\n+eboVir3\t2802\t7\n+eboVir3\t2803\t7\n+eboVir3\t2804\t6\n+eboVir3\t2805\t6\n+eboVir3\t2806\t6\n+eboVir3\t2807\t6\n+eboVir3\t2808\t6\n+eboVir3\t2809\t6\n+eboVir3\t2810\t6\n+eboVir3\t2811\t6\n+eboVir3\t2812\t6\n+eboVir3\t2813\t6\n+eboVir3\t2814\t6\n+eboVir3\t2815\t6\n+eboVir3\t2816\t6\n+eboVir3\t2817\t5\n+eboVir3\t2818\t5\n+eboVir3\t2819\t5\n+eboVir3\t2820\t5\n+eboVir3\t2821\t6\n+eboVir3\t2822\t6\n+eboVir3\t2823\t5\n+eboVir3\t2824\t5\n+eboVir3\t2825\t5\n+eboVir3\t2826\t5\n+eboVir3\t2827\t5\n+eboVir3\t2828\t5\n+eboVir3\t2829\t4\n+eboVir3\t2830\t4\n+eboVir3\t2831\t4\n+eboVir3\t2832\t3\n+eboVir3\t2833\t3\n+eboVir3\t2834\t3\n+eboVir3\t2835\t3\n+eboVir3\t2836\t3\n+eboVir3\t2837\t3\n+eboVir3\t2838\t3\n+eboVir3\t2839\t3\n+eboVir3\t2840\t3\n+eboVir3\t2841\t3\n+eboVir3\t2842\t3\n+eboVir3\t2843\t3\n+eboVir3\t2844\t3\n+eboVir3\t2845\t4\n+eboVir3\t2846\t4\n+eboVir3\t2847\t4\n+eboVir3\t2848\t4\n+eboVir3\t2849\t4\n+eboVir3\t2850\t4\n+eboVir3\t2851\t3\n+eboVir3\t2852\t3\n+eboVir3\t2853\t3\n+eboVir3\t2854\t3\n+eboVir3\t2855\t3\n+eboVir3\t2856\t3\n+eboVir3\t2857\t3\n+eboVir3\t2858\t3\n+eboVir3\t2859\t3\n+eboVir3\t2860\t3\n+eboVir3\t2861\t3\n+eboVir3\t2862\t3\n+eboVir3\t2863\t3\n+eboVir3\t2864\t2\n+eboVir3\t2865\t2\n+eboVir3\t2866\t2\n+eboVir3\t2867\t2\n+eboVir3\t2868\t2\n+eboVir3\t2869\t2\n+eboVir3\t2870\t2\n+eboVir3\t2871\t4\n+eboVir3\t2872\t4\n+eboVir3\t2873\t4\n+eboVir3\t2874\t4\n+eboVir3\t2875\t4\n+eboVir3\t2876\t4\n+eboVir3\t2877\t4\n+eboVir3\t2878\t4\n+eboVir3\t2879\t5\n+eboVir3\t2880\t5\n+eboVir3\t2881\t5\n+eboVir3\t2882\t5\n+eboVir3\t2883\t5\n+eboVir3\t2884\t5\n+eboVir3\t2885\t5\n+eboVir3\t2886\t5\n+eboVir3\t2887\t5\n+eboVir3\t2888\t6\n+eboVir3\t2889\t6\n+eboVir3\t2890\t6\n+eboVir3\t2891\t5\n+eboVir3\t2892\t6\n+eboVir3\t2893\t6\n+eboVir3\t2894\t6\n+eboVir3\t2895\t6\n+eboVir3\t2896\t6\n+eboVir3\t2897\t6\n+eboVir3\t2898\t6\n+eboVir3\t2899\t6\n+eboVir3\t2900\t6\n+eboVir3\t2901\t6\n+eboVir3\t2902\t6\n+eboVir3\t2903\t6\n+eboVir3\t2904\t6\n+eboVir3\t2905\t7\n+eboVir3\t2906\t8\n+eboVir3\t2907\t8\n+eboVir3\t2908\t8\n+eboVir3\t2909\t8\n+eboVir3\t2910\t8\n+eboVir3\t2911\t8\n+eboVir3\t2912\t8\n+eboVir3\t2913\t8\n+eboVir3\t2914\t8\n+eboVir3\t2915\t7\n+eboVir3\t2916\t7\n+eboVir3\t2917\t7\n+eboVir3\t2918\t7\n+eboVir3\t2919\t7\n+eboVir3\t2920\t7\n+eboVir3\t2921\t7\n+eboVir3\t2922\t7\n+eboVir3\t2923\t7\n+eboVir3\t2924\t7\n+eboVir3\t2925\t7\n+eboVir3\t2926\t8\n+eboVir3\t2927\t8\n+eboVir3\t2928\t8\n+eboVir3\t2929\t8\n+eboVir3\t2930\t8\n+eboVir3\t2931\t8\n+eboVir3\t2932\t8\n+eboVir3\t2933\t8\n+eboVir3\t2934\t8\n+eboVir3\t2935\t8\n+eboVir3\t2936\t8\n+eboVir3\t2937\t8\n+eboVir3\t2938\t8\n+eboVir3\t2939\t8\n+eboVir3\t2940\t8\n+eboVir3\t2941\t6\n+eboVir3\t2942\t7\n+eboVir3\t2943\t7\n+eboVir3\t2944\t7\n+eboVir3\t2945\t7\n+eboVir3\t2946\t8\n+eboVir3\t2947\t8\n+eboVir3\t2948\t8\n+eboVir3\t2949\t7\n+eboVir3\t2950\t7\n+eboVir3\t2951\t7\n+eboVir3\t2952\t7\n+eboVir3\t2953\t7\n+eboVir3\t2954\t7\n+eboVir3\t2955\t8\n+eboVir3\t2956\t8\n+eboVir3\t2957\t9\n+eboVir3\t2958\t8\n+eboVir3\t2959\t8\n+eboVir3\t2960\t8\n+eboVir3\t2961\t8\n+eboVir3\t2962\t7\n+eboVir3\t2963\t7\n+eboVir3\t2964\t7\n+eboVir3\t2965\t7\n+eboVir3\t2966\t7\n+eboVir3\t2967\t7\n+eboVir3\t2968\t7\n+eboVir3\t2969\t7\n+eboVir3\t2970\t7\n+eboVir3\t2971\t7\n+eboVir3\t2972\t7\n+eboVir3\t2973\t7\n+eboVir3\t2974\t7\n+eboVir3\t2975\t6\n+eboVir3\t2976\t5\n+eboVir3\t2977\t5\n+eboVir3\t2978\t6\n+eboVir3\t2979\t6\n+eboVir3\t2980\t6\n+eboVir3\t2981\t6\n+eboVir3\t2982\t6\n+eboVir3\t2983\t6\n+eboVir3\t2984\t6\n+eboVir3\t2985\t7\n+eboVir3\t2986\t7\n+eboVir3\t2987\t7\n+eboVir3\t2988\t7\n+eboVir3\t2989\t7\n+eboVir3\t2990\t7\n+eboVir3\t2991\t7\n+eboVir3\t2992\t7\n+eboVir3\t2993\t7\n+eboVir3\t2994\t7\n+eboVir3\t2995\t7\n+eboVir3\t2996\t6\n+eboVir3\t2997\t6\n+eboVir3\t2998\t6\n+eboVir3\t2999\t6\n+eboVir3\t3000\t6\n'
b
diff -r 000000000000 -r 090651229eba test-data/samtools_depth_out2.tab
--- /dev/null Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/samtools_depth_out2.tab Sun Oct 14 19:14:57 2018 -0400
b
b'@@ -0,0 +1,1001 @@\n+eboVir3\t500\t5\n+eboVir3\t501\t5\n+eboVir3\t502\t6\n+eboVir3\t503\t6\n+eboVir3\t504\t6\n+eboVir3\t505\t6\n+eboVir3\t506\t6\n+eboVir3\t507\t6\n+eboVir3\t508\t6\n+eboVir3\t509\t6\n+eboVir3\t510\t7\n+eboVir3\t511\t7\n+eboVir3\t512\t7\n+eboVir3\t513\t7\n+eboVir3\t514\t7\n+eboVir3\t515\t7\n+eboVir3\t516\t7\n+eboVir3\t517\t7\n+eboVir3\t518\t7\n+eboVir3\t519\t7\n+eboVir3\t520\t7\n+eboVir3\t521\t7\n+eboVir3\t522\t7\n+eboVir3\t523\t7\n+eboVir3\t524\t7\n+eboVir3\t525\t7\n+eboVir3\t526\t6\n+eboVir3\t527\t7\n+eboVir3\t528\t6\n+eboVir3\t529\t7\n+eboVir3\t530\t7\n+eboVir3\t531\t7\n+eboVir3\t532\t7\n+eboVir3\t533\t7\n+eboVir3\t534\t7\n+eboVir3\t535\t7\n+eboVir3\t536\t7\n+eboVir3\t537\t7\n+eboVir3\t538\t8\n+eboVir3\t539\t8\n+eboVir3\t540\t8\n+eboVir3\t541\t8\n+eboVir3\t542\t8\n+eboVir3\t543\t8\n+eboVir3\t544\t8\n+eboVir3\t545\t8\n+eboVir3\t546\t8\n+eboVir3\t547\t8\n+eboVir3\t548\t8\n+eboVir3\t549\t8\n+eboVir3\t550\t8\n+eboVir3\t551\t8\n+eboVir3\t552\t9\n+eboVir3\t553\t9\n+eboVir3\t554\t9\n+eboVir3\t555\t8\n+eboVir3\t556\t8\n+eboVir3\t557\t8\n+eboVir3\t558\t8\n+eboVir3\t559\t8\n+eboVir3\t560\t8\n+eboVir3\t561\t8\n+eboVir3\t562\t8\n+eboVir3\t563\t8\n+eboVir3\t564\t6\n+eboVir3\t565\t6\n+eboVir3\t566\t6\n+eboVir3\t567\t6\n+eboVir3\t568\t6\n+eboVir3\t569\t6\n+eboVir3\t570\t6\n+eboVir3\t571\t7\n+eboVir3\t572\t6\n+eboVir3\t573\t6\n+eboVir3\t574\t6\n+eboVir3\t575\t7\n+eboVir3\t576\t7\n+eboVir3\t577\t7\n+eboVir3\t578\t8\n+eboVir3\t579\t8\n+eboVir3\t580\t8\n+eboVir3\t581\t8\n+eboVir3\t582\t9\n+eboVir3\t583\t9\n+eboVir3\t584\t9\n+eboVir3\t585\t9\n+eboVir3\t586\t9\n+eboVir3\t587\t9\n+eboVir3\t588\t9\n+eboVir3\t589\t9\n+eboVir3\t590\t9\n+eboVir3\t591\t9\n+eboVir3\t592\t10\n+eboVir3\t593\t10\n+eboVir3\t594\t12\n+eboVir3\t595\t12\n+eboVir3\t596\t12\n+eboVir3\t597\t11\n+eboVir3\t598\t12\n+eboVir3\t599\t11\n+eboVir3\t600\t11\n+eboVir3\t601\t11\n+eboVir3\t602\t11\n+eboVir3\t603\t11\n+eboVir3\t604\t11\n+eboVir3\t605\t11\n+eboVir3\t606\t11\n+eboVir3\t607\t11\n+eboVir3\t608\t10\n+eboVir3\t609\t10\n+eboVir3\t610\t10\n+eboVir3\t611\t10\n+eboVir3\t612\t10\n+eboVir3\t613\t10\n+eboVir3\t614\t10\n+eboVir3\t615\t10\n+eboVir3\t616\t10\n+eboVir3\t617\t10\n+eboVir3\t618\t10\n+eboVir3\t619\t10\n+eboVir3\t620\t10\n+eboVir3\t621\t11\n+eboVir3\t622\t10\n+eboVir3\t623\t10\n+eboVir3\t624\t10\n+eboVir3\t625\t10\n+eboVir3\t626\t10\n+eboVir3\t627\t10\n+eboVir3\t628\t11\n+eboVir3\t629\t12\n+eboVir3\t630\t12\n+eboVir3\t631\t12\n+eboVir3\t632\t12\n+eboVir3\t633\t12\n+eboVir3\t634\t12\n+eboVir3\t635\t12\n+eboVir3\t636\t12\n+eboVir3\t637\t12\n+eboVir3\t638\t12\n+eboVir3\t639\t12\n+eboVir3\t640\t12\n+eboVir3\t641\t11\n+eboVir3\t642\t11\n+eboVir3\t643\t11\n+eboVir3\t644\t11\n+eboVir3\t645\t10\n+eboVir3\t646\t10\n+eboVir3\t647\t11\n+eboVir3\t648\t10\n+eboVir3\t649\t10\n+eboVir3\t650\t9\n+eboVir3\t651\t9\n+eboVir3\t652\t8\n+eboVir3\t653\t8\n+eboVir3\t654\t8\n+eboVir3\t655\t8\n+eboVir3\t656\t8\n+eboVir3\t657\t8\n+eboVir3\t658\t9\n+eboVir3\t659\t9\n+eboVir3\t660\t9\n+eboVir3\t661\t9\n+eboVir3\t662\t8\n+eboVir3\t663\t8\n+eboVir3\t664\t6\n+eboVir3\t665\t7\n+eboVir3\t666\t7\n+eboVir3\t667\t7\n+eboVir3\t668\t6\n+eboVir3\t669\t6\n+eboVir3\t670\t7\n+eboVir3\t671\t7\n+eboVir3\t672\t7\n+eboVir3\t673\t8\n+eboVir3\t674\t8\n+eboVir3\t675\t9\n+eboVir3\t676\t10\n+eboVir3\t677\t10\n+eboVir3\t678\t10\n+eboVir3\t679\t10\n+eboVir3\t680\t11\n+eboVir3\t681\t11\n+eboVir3\t682\t11\n+eboVir3\t683\t11\n+eboVir3\t684\t11\n+eboVir3\t685\t11\n+eboVir3\t686\t11\n+eboVir3\t687\t11\n+eboVir3\t688\t11\n+eboVir3\t689\t11\n+eboVir3\t690\t11\n+eboVir3\t691\t10\n+eboVir3\t692\t10\n+eboVir3\t693\t10\n+eboVir3\t694\t10\n+eboVir3\t695\t10\n+eboVir3\t696\t10\n+eboVir3\t697\t10\n+eboVir3\t698\t9\n+eboVir3\t699\t8\n+eboVir3\t700\t9\n+eboVir3\t701\t9\n+eboVir3\t702\t9\n+eboVir3\t703\t9\n+eboVir3\t704\t9\n+eboVir3\t705\t9\n+eboVir3\t706\t9\n+eboVir3\t707\t9\n+eboVir3\t708\t9\n+eboVir3\t709\t9\n+eboVir3\t710\t9\n+eboVir3\t711\t9\n+eboVir3\t712\t9\n+eboVir3\t713\t10\n+eboVir3\t714\t10\n+eboVir3\t715\t10\n+eboVir3\t716\t10\n+eboVir3\t717\t9\n+eboVir3\t718\t9\n+eboVir3\t719\t9\n+eboVir3\t720\t9\n+eboVir3\t721\t9\n+eboVir3\t722\t9\n+eboVir3\t723\t9\n+eboVir3\t724\t9\n+eboVir3\t725\t9\n+eboVir3\t726\t9\n+eboVir3\t727\t9\n+eboVir3\t728\t8\n+eboVir3\t729\t8\n+eboVir3\t730\t10\n+eboVir3\t731\t10\n+eboVir3\t732\t10\n+eboVir3\t733\t11\n+eboVir3\t734\t11\n+eboVir3\t735\t10\n+eboVir3\t736\t10\n+eboVir3\t737\t10\n+eboVir3\t738\t10\n+eboVir3\t739\t10\n+eboVir3\t740\t9\n+eboVir3\t741\t9\n+eboVir3\t742\t9\n+eboVir3\t743\t8\n+eboVir3\t744\t8\n+eboVir3\t745\t7\n+eboVir3\t746\t6\n+eboVir3\t747\t6\n+eboVir3\t748\t6\n+eboVir3\t749\t6\n+eboVir3\t750\t5\n+eboVir3\t751\t6\n+eboVir3\t752\t6\n+eboVir3\t753\t6\n+eboVir3\t754\t6\n+eboVir3\t755\t6\n+eboVir3\t756\t6\n+eboVir3\t757\t6\n+eboVir3\t758\t6\n+'..b'+eboVir3\t1257\t5\n+eboVir3\t1258\t7\n+eboVir3\t1259\t7\n+eboVir3\t1260\t7\n+eboVir3\t1261\t8\n+eboVir3\t1262\t9\n+eboVir3\t1263\t9\n+eboVir3\t1264\t10\n+eboVir3\t1265\t10\n+eboVir3\t1266\t11\n+eboVir3\t1267\t11\n+eboVir3\t1268\t11\n+eboVir3\t1269\t10\n+eboVir3\t1270\t10\n+eboVir3\t1271\t10\n+eboVir3\t1272\t10\n+eboVir3\t1273\t10\n+eboVir3\t1274\t10\n+eboVir3\t1275\t11\n+eboVir3\t1276\t11\n+eboVir3\t1277\t11\n+eboVir3\t1278\t11\n+eboVir3\t1279\t12\n+eboVir3\t1280\t12\n+eboVir3\t1281\t12\n+eboVir3\t1282\t12\n+eboVir3\t1283\t12\n+eboVir3\t1284\t12\n+eboVir3\t1285\t12\n+eboVir3\t1286\t13\n+eboVir3\t1287\t13\n+eboVir3\t1288\t13\n+eboVir3\t1289\t13\n+eboVir3\t1290\t13\n+eboVir3\t1291\t13\n+eboVir3\t1292\t13\n+eboVir3\t1293\t13\n+eboVir3\t1294\t13\n+eboVir3\t1295\t13\n+eboVir3\t1296\t13\n+eboVir3\t1297\t13\n+eboVir3\t1298\t13\n+eboVir3\t1299\t13\n+eboVir3\t1300\t13\n+eboVir3\t1301\t13\n+eboVir3\t1302\t14\n+eboVir3\t1303\t14\n+eboVir3\t1304\t14\n+eboVir3\t1305\t14\n+eboVir3\t1306\t14\n+eboVir3\t1307\t15\n+eboVir3\t1308\t15\n+eboVir3\t1309\t16\n+eboVir3\t1310\t16\n+eboVir3\t1311\t16\n+eboVir3\t1312\t16\n+eboVir3\t1313\t16\n+eboVir3\t1314\t16\n+eboVir3\t1315\t16\n+eboVir3\t1316\t16\n+eboVir3\t1317\t16\n+eboVir3\t1318\t15\n+eboVir3\t1319\t15\n+eboVir3\t1320\t15\n+eboVir3\t1321\t15\n+eboVir3\t1322\t15\n+eboVir3\t1323\t15\n+eboVir3\t1324\t14\n+eboVir3\t1325\t14\n+eboVir3\t1326\t14\n+eboVir3\t1327\t14\n+eboVir3\t1328\t12\n+eboVir3\t1329\t12\n+eboVir3\t1330\t12\n+eboVir3\t1331\t11\n+eboVir3\t1332\t10\n+eboVir3\t1333\t10\n+eboVir3\t1334\t9\n+eboVir3\t1335\t9\n+eboVir3\t1336\t8\n+eboVir3\t1337\t8\n+eboVir3\t1338\t8\n+eboVir3\t1339\t8\n+eboVir3\t1340\t7\n+eboVir3\t1341\t8\n+eboVir3\t1342\t8\n+eboVir3\t1343\t8\n+eboVir3\t1344\t8\n+eboVir3\t1345\t7\n+eboVir3\t1346\t7\n+eboVir3\t1347\t7\n+eboVir3\t1348\t7\n+eboVir3\t1349\t6\n+eboVir3\t1350\t6\n+eboVir3\t1351\t6\n+eboVir3\t1352\t6\n+eboVir3\t1353\t6\n+eboVir3\t1354\t7\n+eboVir3\t1355\t7\n+eboVir3\t1356\t7\n+eboVir3\t1357\t8\n+eboVir3\t1358\t8\n+eboVir3\t1359\t8\n+eboVir3\t1360\t8\n+eboVir3\t1361\t8\n+eboVir3\t1362\t8\n+eboVir3\t1363\t8\n+eboVir3\t1364\t9\n+eboVir3\t1365\t9\n+eboVir3\t1366\t9\n+eboVir3\t1367\t9\n+eboVir3\t1368\t9\n+eboVir3\t1369\t9\n+eboVir3\t1370\t9\n+eboVir3\t1371\t9\n+eboVir3\t1372\t8\n+eboVir3\t1373\t8\n+eboVir3\t1374\t8\n+eboVir3\t1375\t8\n+eboVir3\t1376\t9\n+eboVir3\t1377\t9\n+eboVir3\t1378\t9\n+eboVir3\t1379\t8\n+eboVir3\t1380\t8\n+eboVir3\t1381\t8\n+eboVir3\t1382\t8\n+eboVir3\t1383\t8\n+eboVir3\t1384\t8\n+eboVir3\t1385\t8\n+eboVir3\t1386\t9\n+eboVir3\t1387\t8\n+eboVir3\t1388\t8\n+eboVir3\t1389\t8\n+eboVir3\t1390\t8\n+eboVir3\t1391\t9\n+eboVir3\t1392\t9\n+eboVir3\t1393\t9\n+eboVir3\t1394\t9\n+eboVir3\t1395\t9\n+eboVir3\t1396\t9\n+eboVir3\t1397\t9\n+eboVir3\t1398\t9\n+eboVir3\t1399\t9\n+eboVir3\t1400\t9\n+eboVir3\t1401\t11\n+eboVir3\t1402\t11\n+eboVir3\t1403\t11\n+eboVir3\t1404\t11\n+eboVir3\t1405\t11\n+eboVir3\t1406\t11\n+eboVir3\t1407\t11\n+eboVir3\t1408\t11\n+eboVir3\t1409\t11\n+eboVir3\t1410\t11\n+eboVir3\t1411\t10\n+eboVir3\t1412\t10\n+eboVir3\t1413\t10\n+eboVir3\t1414\t10\n+eboVir3\t1415\t11\n+eboVir3\t1416\t11\n+eboVir3\t1417\t11\n+eboVir3\t1418\t11\n+eboVir3\t1419\t11\n+eboVir3\t1420\t11\n+eboVir3\t1421\t11\n+eboVir3\t1422\t11\n+eboVir3\t1423\t11\n+eboVir3\t1424\t10\n+eboVir3\t1425\t10\n+eboVir3\t1426\t9\n+eboVir3\t1427\t8\n+eboVir3\t1428\t8\n+eboVir3\t1429\t8\n+eboVir3\t1430\t9\n+eboVir3\t1431\t9\n+eboVir3\t1432\t9\n+eboVir3\t1433\t9\n+eboVir3\t1434\t8\n+eboVir3\t1435\t8\n+eboVir3\t1436\t8\n+eboVir3\t1437\t8\n+eboVir3\t1438\t8\n+eboVir3\t1439\t8\n+eboVir3\t1440\t8\n+eboVir3\t1441\t8\n+eboVir3\t1442\t8\n+eboVir3\t1443\t8\n+eboVir3\t1444\t8\n+eboVir3\t1445\t8\n+eboVir3\t1446\t7\n+eboVir3\t1447\t6\n+eboVir3\t1448\t6\n+eboVir3\t1449\t6\n+eboVir3\t1450\t6\n+eboVir3\t1451\t6\n+eboVir3\t1452\t6\n+eboVir3\t1453\t6\n+eboVir3\t1454\t6\n+eboVir3\t1455\t6\n+eboVir3\t1456\t5\n+eboVir3\t1457\t5\n+eboVir3\t1458\t5\n+eboVir3\t1459\t5\n+eboVir3\t1460\t5\n+eboVir3\t1461\t4\n+eboVir3\t1462\t4\n+eboVir3\t1463\t5\n+eboVir3\t1464\t5\n+eboVir3\t1465\t6\n+eboVir3\t1466\t6\n+eboVir3\t1467\t6\n+eboVir3\t1468\t6\n+eboVir3\t1469\t6\n+eboVir3\t1470\t6\n+eboVir3\t1471\t4\n+eboVir3\t1472\t4\n+eboVir3\t1473\t4\n+eboVir3\t1474\t4\n+eboVir3\t1475\t4\n+eboVir3\t1476\t4\n+eboVir3\t1477\t4\n+eboVir3\t1478\t4\n+eboVir3\t1479\t4\n+eboVir3\t1480\t4\n+eboVir3\t1481\t4\n+eboVir3\t1482\t4\n+eboVir3\t1483\t4\n+eboVir3\t1484\t4\n+eboVir3\t1485\t4\n+eboVir3\t1486\t6\n+eboVir3\t1487\t6\n+eboVir3\t1488\t6\n+eboVir3\t1489\t6\n+eboVir3\t1490\t6\n+eboVir3\t1491\t6\n+eboVir3\t1492\t6\n+eboVir3\t1493\t6\n+eboVir3\t1494\t7\n+eboVir3\t1495\t7\n+eboVir3\t1496\t7\n+eboVir3\t1497\t7\n+eboVir3\t1498\t7\n+eboVir3\t1499\t7\n+eboVir3\t1500\t6\n'
b
diff -r 000000000000 -r 090651229eba test-data/samtools_depth_out3.tab
--- /dev/null Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/samtools_depth_out3.tab Sun Oct 14 19:14:57 2018 -0400
b
b'@@ -0,0 +1,18957 @@\n+eboVir3\t1\t0\t0\n+eboVir3\t2\t0\t0\n+eboVir3\t3\t0\t0\n+eboVir3\t4\t0\t0\n+eboVir3\t5\t0\t0\n+eboVir3\t6\t0\t0\n+eboVir3\t7\t0\t0\n+eboVir3\t8\t0\t0\n+eboVir3\t9\t0\t0\n+eboVir3\t10\t0\t0\n+eboVir3\t11\t1\t0\n+eboVir3\t12\t1\t0\n+eboVir3\t13\t1\t0\n+eboVir3\t14\t1\t0\n+eboVir3\t15\t1\t0\n+eboVir3\t16\t1\t0\n+eboVir3\t17\t1\t0\n+eboVir3\t18\t1\t0\n+eboVir3\t19\t1\t0\n+eboVir3\t20\t2\t0\n+eboVir3\t21\t2\t0\n+eboVir3\t22\t2\t0\n+eboVir3\t23\t2\t0\n+eboVir3\t24\t2\t0\n+eboVir3\t25\t2\t0\n+eboVir3\t26\t2\t0\n+eboVir3\t27\t2\t0\n+eboVir3\t28\t2\t0\n+eboVir3\t29\t2\t0\n+eboVir3\t30\t2\t0\n+eboVir3\t31\t2\t0\n+eboVir3\t32\t2\t0\n+eboVir3\t33\t2\t0\n+eboVir3\t34\t2\t0\n+eboVir3\t35\t2\t0\n+eboVir3\t36\t2\t0\n+eboVir3\t37\t2\t0\n+eboVir3\t38\t2\t0\n+eboVir3\t39\t2\t0\n+eboVir3\t40\t2\t0\n+eboVir3\t41\t2\t0\n+eboVir3\t42\t2\t0\n+eboVir3\t43\t2\t0\n+eboVir3\t44\t2\t0\n+eboVir3\t45\t2\t0\n+eboVir3\t46\t2\t0\n+eboVir3\t47\t2\t0\n+eboVir3\t48\t2\t0\n+eboVir3\t49\t2\t0\n+eboVir3\t50\t2\t0\n+eboVir3\t51\t2\t0\n+eboVir3\t52\t2\t0\n+eboVir3\t53\t2\t0\n+eboVir3\t54\t2\t0\n+eboVir3\t55\t2\t0\n+eboVir3\t56\t2\t0\n+eboVir3\t57\t2\t0\n+eboVir3\t58\t2\t0\n+eboVir3\t59\t2\t0\n+eboVir3\t60\t2\t0\n+eboVir3\t61\t2\t0\n+eboVir3\t62\t2\t0\n+eboVir3\t63\t2\t0\n+eboVir3\t64\t2\t0\n+eboVir3\t65\t2\t0\n+eboVir3\t66\t2\t0\n+eboVir3\t67\t2\t0\n+eboVir3\t68\t3\t0\n+eboVir3\t69\t3\t0\n+eboVir3\t70\t3\t0\n+eboVir3\t71\t3\t0\n+eboVir3\t72\t3\t0\n+eboVir3\t73\t3\t0\n+eboVir3\t74\t3\t0\n+eboVir3\t75\t4\t0\n+eboVir3\t76\t4\t0\n+eboVir3\t77\t5\t0\n+eboVir3\t78\t5\t0\n+eboVir3\t79\t6\t0\n+eboVir3\t80\t6\t0\n+eboVir3\t81\t5\t0\n+eboVir3\t82\t5\t0\n+eboVir3\t83\t5\t0\n+eboVir3\t84\t5\t0\n+eboVir3\t85\t6\t0\n+eboVir3\t86\t6\t0\n+eboVir3\t87\t6\t0\n+eboVir3\t88\t6\t0\n+eboVir3\t89\t6\t0\n+eboVir3\t90\t5\t0\n+eboVir3\t91\t5\t0\n+eboVir3\t92\t5\t0\n+eboVir3\t93\t5\t0\n+eboVir3\t94\t5\t0\n+eboVir3\t95\t5\t0\n+eboVir3\t96\t5\t0\n+eboVir3\t97\t5\t0\n+eboVir3\t98\t5\t0\n+eboVir3\t99\t5\t0\n+eboVir3\t100\t5\t0\n+eboVir3\t101\t5\t0\n+eboVir3\t102\t5\t0\n+eboVir3\t103\t5\t0\n+eboVir3\t104\t5\t0\n+eboVir3\t105\t5\t0\n+eboVir3\t106\t5\t0\n+eboVir3\t107\t5\t0\n+eboVir3\t108\t5\t0\n+eboVir3\t109\t6\t1\n+eboVir3\t110\t6\t1\n+eboVir3\t111\t6\t1\n+eboVir3\t112\t6\t1\n+eboVir3\t113\t6\t1\n+eboVir3\t114\t6\t1\n+eboVir3\t115\t6\t1\n+eboVir3\t116\t7\t1\n+eboVir3\t117\t7\t1\n+eboVir3\t118\t7\t1\n+eboVir3\t119\t7\t1\n+eboVir3\t120\t8\t1\n+eboVir3\t121\t8\t1\n+eboVir3\t122\t8\t1\n+eboVir3\t123\t9\t1\n+eboVir3\t124\t9\t1\n+eboVir3\t125\t9\t1\n+eboVir3\t126\t9\t1\n+eboVir3\t127\t9\t1\n+eboVir3\t128\t9\t1\n+eboVir3\t129\t9\t2\n+eboVir3\t130\t9\t2\n+eboVir3\t131\t9\t2\n+eboVir3\t132\t9\t2\n+eboVir3\t133\t9\t2\n+eboVir3\t134\t10\t2\n+eboVir3\t135\t10\t2\n+eboVir3\t136\t10\t2\n+eboVir3\t137\t10\t2\n+eboVir3\t138\t9\t2\n+eboVir3\t139\t9\t2\n+eboVir3\t140\t10\t2\n+eboVir3\t141\t10\t2\n+eboVir3\t142\t10\t2\n+eboVir3\t143\t10\t2\n+eboVir3\t144\t10\t2\n+eboVir3\t145\t9\t2\n+eboVir3\t146\t9\t2\n+eboVir3\t147\t8\t2\n+eboVir3\t148\t8\t2\n+eboVir3\t149\t7\t2\n+eboVir3\t150\t7\t2\n+eboVir3\t151\t7\t2\n+eboVir3\t152\t8\t2\n+eboVir3\t153\t8\t2\n+eboVir3\t154\t8\t2\n+eboVir3\t155\t7\t2\n+eboVir3\t156\t7\t2\n+eboVir3\t157\t7\t2\n+eboVir3\t158\t7\t2\n+eboVir3\t159\t7\t2\n+eboVir3\t160\t7\t2\n+eboVir3\t161\t7\t2\n+eboVir3\t162\t7\t2\n+eboVir3\t163\t7\t2\n+eboVir3\t164\t7\t2\n+eboVir3\t165\t7\t2\n+eboVir3\t166\t7\t2\n+eboVir3\t167\t7\t2\n+eboVir3\t168\t7\t2\n+eboVir3\t169\t7\t2\n+eboVir3\t170\t7\t2\n+eboVir3\t171\t7\t2\n+eboVir3\t172\t7\t2\n+eboVir3\t173\t7\t2\n+eboVir3\t174\t7\t2\n+eboVir3\t175\t7\t2\n+eboVir3\t176\t7\t3\n+eboVir3\t177\t7\t3\n+eboVir3\t178\t7\t3\n+eboVir3\t179\t6\t2\n+eboVir3\t180\t6\t2\n+eboVir3\t181\t6\t2\n+eboVir3\t182\t6\t2\n+eboVir3\t183\t6\t2\n+eboVir3\t184\t6\t2\n+eboVir3\t185\t6\t2\n+eboVir3\t186\t5\t2\n+eboVir3\t187\t5\t2\n+eboVir3\t188\t5\t2\n+eboVir3\t189\t5\t2\n+eboVir3\t190\t4\t2\n+eboVir3\t191\t4\t2\n+eboVir3\t192\t4\t2\n+eboVir3\t193\t3\t2\n+eboVir3\t194\t3\t2\n+eboVir3\t195\t3\t2\n+eboVir3\t196\t3\t2\n+eboVir3\t197\t3\t2\n+eboVir3\t198\t3\t3\n+eboVir3\t199\t3\t2\n+eboVir3\t200\t4\t2\n+eboVir3\t201\t4\t2\n+eboVir3\t202\t4\t3\n+eboVir3\t203\t4\t3\n+eboVir3\t204\t3\t3\n+eboVir3\t205\t3\t3\n+eboVir3\t206\t3\t3\n+eboVir3\t207\t3\t3\n+eboVir3\t208\t3\t3\n+eboVir3\t209\t3\t3\n+eboVir3\t210\t2\t3\n+eboVir3\t211\t2\t3\n+eboVir3\t212\t2\t3\n+eboVir3\t213\t2\t3\n+eboVir3\t214\t2\t3\n+eboVir3\t215\t2\t3\n+eboVir3\t216\t2\t3\n+eboVir3\t217\t2\t3\n+eboVir3\t218\t2\t3\n+eboVir3\t219\t2\t3\n+eboVir3\t220\t2\t3\n+eboVir3\t221\t2\t3\n+eboVir3\t222\t1\t3\n+eboVir3\t223\t1\t3\n+eboVir3\t224\t1\t3\n+eboVir3\t225\t1\t3\n+eboVir3\t226\t1\t3\n+eboVir3\t227\t1\t3\n+eboVir3\t228\t1\t3\n+eboVir3\t229\t1\t3\n+eboVir3\t230\t1\t3\n+eboVir3\t231\t1\t3\n+eboVir3\t232\t1\t3\n+eboVir3\t233\t1\t3\n+eboVir3\t234\t1\t3\n+eboVir3\t235\t1\t3\n+eboVir3\t236\t1\t3\n+eboVir3\t237\t1\t3\n+eboVir3\t238\t1\t3\n+eboVir3\t239\t1\t3\n+eboVir3\t240\t1\t'..b'8747\t7\t2\n+eboVir3\t18748\t7\t2\n+eboVir3\t18749\t7\t2\n+eboVir3\t18750\t7\t2\n+eboVir3\t18751\t7\t2\n+eboVir3\t18752\t7\t2\n+eboVir3\t18753\t7\t2\n+eboVir3\t18754\t7\t2\n+eboVir3\t18755\t7\t2\n+eboVir3\t18756\t6\t2\n+eboVir3\t18757\t6\t2\n+eboVir3\t18758\t6\t2\n+eboVir3\t18759\t6\t2\n+eboVir3\t18760\t6\t2\n+eboVir3\t18761\t6\t2\n+eboVir3\t18762\t5\t2\n+eboVir3\t18763\t5\t2\n+eboVir3\t18764\t4\t2\n+eboVir3\t18765\t4\t2\n+eboVir3\t18766\t4\t2\n+eboVir3\t18767\t4\t2\n+eboVir3\t18768\t4\t2\n+eboVir3\t18769\t4\t2\n+eboVir3\t18770\t3\t2\n+eboVir3\t18771\t3\t2\n+eboVir3\t18772\t3\t2\n+eboVir3\t18773\t3\t2\n+eboVir3\t18774\t3\t2\n+eboVir3\t18775\t3\t2\n+eboVir3\t18776\t4\t2\n+eboVir3\t18777\t4\t2\n+eboVir3\t18778\t4\t3\n+eboVir3\t18779\t4\t3\n+eboVir3\t18780\t4\t3\n+eboVir3\t18781\t3\t3\n+eboVir3\t18782\t3\t3\n+eboVir3\t18783\t3\t3\n+eboVir3\t18784\t3\t3\n+eboVir3\t18785\t3\t3\n+eboVir3\t18786\t3\t3\n+eboVir3\t18787\t3\t3\n+eboVir3\t18788\t4\t3\n+eboVir3\t18789\t4\t3\n+eboVir3\t18790\t4\t3\n+eboVir3\t18791\t4\t3\n+eboVir3\t18792\t4\t3\n+eboVir3\t18793\t4\t3\n+eboVir3\t18794\t4\t3\n+eboVir3\t18795\t4\t2\n+eboVir3\t18796\t4\t2\n+eboVir3\t18797\t4\t2\n+eboVir3\t18798\t4\t2\n+eboVir3\t18799\t4\t2\n+eboVir3\t18800\t4\t2\n+eboVir3\t18801\t4\t2\n+eboVir3\t18802\t4\t2\n+eboVir3\t18803\t4\t2\n+eboVir3\t18804\t4\t2\n+eboVir3\t18805\t3\t2\n+eboVir3\t18806\t3\t2\n+eboVir3\t18807\t3\t2\n+eboVir3\t18808\t3\t2\n+eboVir3\t18809\t3\t2\n+eboVir3\t18810\t3\t2\n+eboVir3\t18811\t3\t2\n+eboVir3\t18812\t3\t2\n+eboVir3\t18813\t3\t2\n+eboVir3\t18814\t2\t2\n+eboVir3\t18815\t2\t2\n+eboVir3\t18816\t2\t1\n+eboVir3\t18817\t2\t1\n+eboVir3\t18818\t2\t1\n+eboVir3\t18819\t2\t1\n+eboVir3\t18820\t2\t1\n+eboVir3\t18821\t2\t1\n+eboVir3\t18822\t2\t1\n+eboVir3\t18823\t2\t1\n+eboVir3\t18824\t2\t1\n+eboVir3\t18825\t2\t1\n+eboVir3\t18826\t2\t1\n+eboVir3\t18827\t3\t1\n+eboVir3\t18828\t3\t1\n+eboVir3\t18829\t3\t1\n+eboVir3\t18830\t3\t1\n+eboVir3\t18831\t3\t1\n+eboVir3\t18832\t3\t1\n+eboVir3\t18833\t3\t1\n+eboVir3\t18834\t3\t1\n+eboVir3\t18835\t3\t1\n+eboVir3\t18836\t3\t1\n+eboVir3\t18837\t3\t1\n+eboVir3\t18838\t3\t1\n+eboVir3\t18839\t3\t1\n+eboVir3\t18840\t3\t1\n+eboVir3\t18841\t4\t1\n+eboVir3\t18842\t4\t1\n+eboVir3\t18843\t4\t1\n+eboVir3\t18844\t4\t1\n+eboVir3\t18845\t4\t1\n+eboVir3\t18846\t3\t1\n+eboVir3\t18847\t3\t1\n+eboVir3\t18848\t3\t0\n+eboVir3\t18849\t3\t0\n+eboVir3\t18850\t3\t0\n+eboVir3\t18851\t3\t0\n+eboVir3\t18852\t3\t0\n+eboVir3\t18853\t3\t0\n+eboVir3\t18854\t3\t0\n+eboVir3\t18855\t3\t0\n+eboVir3\t18856\t3\t0\n+eboVir3\t18857\t3\t0\n+eboVir3\t18858\t2\t0\n+eboVir3\t18859\t2\t0\n+eboVir3\t18860\t2\t0\n+eboVir3\t18861\t2\t0\n+eboVir3\t18862\t2\t0\n+eboVir3\t18863\t2\t0\n+eboVir3\t18864\t3\t0\n+eboVir3\t18865\t4\t0\n+eboVir3\t18866\t4\t0\n+eboVir3\t18867\t4\t0\n+eboVir3\t18868\t4\t0\n+eboVir3\t18869\t4\t0\n+eboVir3\t18870\t5\t0\n+eboVir3\t18871\t5\t0\n+eboVir3\t18872\t5\t0\n+eboVir3\t18873\t5\t0\n+eboVir3\t18874\t5\t0\n+eboVir3\t18875\t5\t0\n+eboVir3\t18876\t5\t0\n+eboVir3\t18877\t5\t0\n+eboVir3\t18878\t5\t0\n+eboVir3\t18879\t5\t0\n+eboVir3\t18880\t5\t0\n+eboVir3\t18881\t5\t0\n+eboVir3\t18882\t5\t0\n+eboVir3\t18883\t5\t0\n+eboVir3\t18884\t5\t0\n+eboVir3\t18885\t5\t0\n+eboVir3\t18886\t5\t0\n+eboVir3\t18887\t5\t0\n+eboVir3\t18888\t6\t0\n+eboVir3\t18889\t6\t0\n+eboVir3\t18890\t6\t0\n+eboVir3\t18891\t6\t0\n+eboVir3\t18892\t6\t0\n+eboVir3\t18893\t6\t0\n+eboVir3\t18894\t6\t0\n+eboVir3\t18895\t6\t0\n+eboVir3\t18896\t6\t0\n+eboVir3\t18897\t5\t0\n+eboVir3\t18898\t5\t0\n+eboVir3\t18899\t5\t0\n+eboVir3\t18900\t5\t0\n+eboVir3\t18901\t5\t0\n+eboVir3\t18902\t5\t0\n+eboVir3\t18903\t5\t0\n+eboVir3\t18904\t5\t0\n+eboVir3\t18905\t5\t0\n+eboVir3\t18906\t5\t0\n+eboVir3\t18907\t5\t0\n+eboVir3\t18908\t5\t0\n+eboVir3\t18909\t5\t0\n+eboVir3\t18910\t5\t0\n+eboVir3\t18911\t4\t0\n+eboVir3\t18912\t4\t0\n+eboVir3\t18913\t4\t0\n+eboVir3\t18914\t4\t0\n+eboVir3\t18915\t4\t0\n+eboVir3\t18916\t4\t0\n+eboVir3\t18917\t4\t0\n+eboVir3\t18918\t4\t0\n+eboVir3\t18919\t4\t0\n+eboVir3\t18920\t4\t0\n+eboVir3\t18921\t4\t0\n+eboVir3\t18922\t4\t0\n+eboVir3\t18923\t4\t0\n+eboVir3\t18924\t4\t0\n+eboVir3\t18925\t4\t0\n+eboVir3\t18926\t4\t0\n+eboVir3\t18927\t4\t0\n+eboVir3\t18928\t4\t0\n+eboVir3\t18929\t4\t0\n+eboVir3\t18930\t4\t0\n+eboVir3\t18931\t4\t0\n+eboVir3\t18932\t4\t0\n+eboVir3\t18933\t4\t0\n+eboVir3\t18934\t3\t0\n+eboVir3\t18935\t2\t0\n+eboVir3\t18936\t2\t0\n+eboVir3\t18937\t2\t0\n+eboVir3\t18938\t2\t0\n+eboVir3\t18939\t2\t0\n+eboVir3\t18940\t1\t0\n+eboVir3\t18941\t1\t0\n+eboVir3\t18942\t1\t0\n+eboVir3\t18943\t1\t0\n+eboVir3\t18944\t1\t0\n+eboVir3\t18945\t1\t0\n+eboVir3\t18946\t1\t0\n+eboVir3\t18947\t1\t0\n+eboVir3\t18948\t1\t0\n+eboVir3\t18949\t1\t0\n+eboVir3\t18950\t1\t0\n+eboVir3\t18951\t1\t0\n+eboVir3\t18952\t1\t0\n+eboVir3\t18953\t1\t0\n+eboVir3\t18954\t1\t0\n+eboVir3\t18955\t1\t0\n+eboVir3\t18956\t1\t0\n+eboVir3\t18957\t1\t0\n'
b
diff -r 000000000000 -r 090651229eba test-data/samtools_depth_out4.tab
--- /dev/null Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/samtools_depth_out4.tab Sun Oct 14 19:14:57 2018 -0400
b
b'@@ -0,0 +1,18947 @@\n+eboVir3\t11\t1\t0\n+eboVir3\t12\t1\t0\n+eboVir3\t13\t1\t0\n+eboVir3\t14\t1\t0\n+eboVir3\t15\t1\t0\n+eboVir3\t16\t1\t0\n+eboVir3\t17\t1\t0\n+eboVir3\t18\t1\t0\n+eboVir3\t19\t1\t0\n+eboVir3\t20\t2\t0\n+eboVir3\t21\t2\t0\n+eboVir3\t22\t2\t0\n+eboVir3\t23\t2\t0\n+eboVir3\t24\t2\t0\n+eboVir3\t25\t2\t0\n+eboVir3\t26\t2\t0\n+eboVir3\t27\t2\t0\n+eboVir3\t28\t2\t0\n+eboVir3\t29\t2\t0\n+eboVir3\t30\t2\t0\n+eboVir3\t31\t2\t0\n+eboVir3\t32\t2\t0\n+eboVir3\t33\t2\t0\n+eboVir3\t34\t2\t0\n+eboVir3\t35\t2\t0\n+eboVir3\t36\t2\t0\n+eboVir3\t37\t2\t0\n+eboVir3\t38\t2\t0\n+eboVir3\t39\t2\t0\n+eboVir3\t40\t2\t0\n+eboVir3\t41\t2\t0\n+eboVir3\t42\t2\t0\n+eboVir3\t43\t2\t0\n+eboVir3\t44\t2\t0\n+eboVir3\t45\t2\t0\n+eboVir3\t46\t2\t0\n+eboVir3\t47\t2\t0\n+eboVir3\t48\t2\t0\n+eboVir3\t49\t2\t0\n+eboVir3\t50\t2\t0\n+eboVir3\t51\t2\t0\n+eboVir3\t52\t2\t0\n+eboVir3\t53\t2\t0\n+eboVir3\t54\t2\t0\n+eboVir3\t55\t2\t0\n+eboVir3\t56\t2\t0\n+eboVir3\t57\t2\t0\n+eboVir3\t58\t2\t0\n+eboVir3\t59\t2\t0\n+eboVir3\t60\t2\t0\n+eboVir3\t61\t2\t0\n+eboVir3\t62\t2\t0\n+eboVir3\t63\t2\t0\n+eboVir3\t64\t2\t0\n+eboVir3\t65\t2\t0\n+eboVir3\t66\t2\t0\n+eboVir3\t67\t2\t0\n+eboVir3\t68\t3\t0\n+eboVir3\t69\t3\t0\n+eboVir3\t70\t3\t0\n+eboVir3\t71\t3\t0\n+eboVir3\t72\t3\t0\n+eboVir3\t73\t3\t0\n+eboVir3\t74\t3\t0\n+eboVir3\t75\t4\t0\n+eboVir3\t76\t4\t0\n+eboVir3\t77\t5\t0\n+eboVir3\t78\t5\t0\n+eboVir3\t79\t6\t0\n+eboVir3\t80\t6\t0\n+eboVir3\t81\t5\t0\n+eboVir3\t82\t5\t0\n+eboVir3\t83\t5\t0\n+eboVir3\t84\t5\t0\n+eboVir3\t85\t6\t0\n+eboVir3\t86\t6\t0\n+eboVir3\t87\t6\t0\n+eboVir3\t88\t6\t0\n+eboVir3\t89\t6\t0\n+eboVir3\t90\t5\t0\n+eboVir3\t91\t5\t0\n+eboVir3\t92\t5\t0\n+eboVir3\t93\t5\t0\n+eboVir3\t94\t5\t0\n+eboVir3\t95\t5\t0\n+eboVir3\t96\t5\t0\n+eboVir3\t97\t5\t0\n+eboVir3\t98\t5\t0\n+eboVir3\t99\t5\t0\n+eboVir3\t100\t5\t0\n+eboVir3\t101\t5\t0\n+eboVir3\t102\t5\t0\n+eboVir3\t103\t5\t0\n+eboVir3\t104\t5\t0\n+eboVir3\t105\t5\t0\n+eboVir3\t106\t5\t0\n+eboVir3\t107\t5\t0\n+eboVir3\t108\t5\t0\n+eboVir3\t109\t6\t0\n+eboVir3\t110\t6\t0\n+eboVir3\t111\t6\t0\n+eboVir3\t112\t6\t0\n+eboVir3\t113\t6\t0\n+eboVir3\t114\t6\t0\n+eboVir3\t115\t6\t0\n+eboVir3\t116\t7\t0\n+eboVir3\t117\t7\t0\n+eboVir3\t118\t7\t0\n+eboVir3\t119\t7\t0\n+eboVir3\t120\t8\t0\n+eboVir3\t121\t8\t0\n+eboVir3\t122\t8\t0\n+eboVir3\t123\t9\t0\n+eboVir3\t124\t9\t0\n+eboVir3\t125\t9\t0\n+eboVir3\t126\t9\t0\n+eboVir3\t127\t9\t0\n+eboVir3\t128\t9\t0\n+eboVir3\t129\t9\t0\n+eboVir3\t130\t9\t0\n+eboVir3\t131\t9\t0\n+eboVir3\t132\t9\t0\n+eboVir3\t133\t9\t0\n+eboVir3\t134\t10\t0\n+eboVir3\t135\t10\t0\n+eboVir3\t136\t10\t0\n+eboVir3\t137\t10\t0\n+eboVir3\t138\t9\t0\n+eboVir3\t139\t9\t0\n+eboVir3\t140\t10\t0\n+eboVir3\t141\t10\t0\n+eboVir3\t142\t10\t0\n+eboVir3\t143\t10\t0\n+eboVir3\t144\t10\t0\n+eboVir3\t145\t9\t0\n+eboVir3\t146\t9\t0\n+eboVir3\t147\t8\t0\n+eboVir3\t148\t8\t0\n+eboVir3\t149\t7\t0\n+eboVir3\t150\t7\t0\n+eboVir3\t151\t7\t0\n+eboVir3\t152\t8\t0\n+eboVir3\t153\t8\t0\n+eboVir3\t154\t8\t0\n+eboVir3\t155\t7\t0\n+eboVir3\t156\t7\t0\n+eboVir3\t157\t7\t0\n+eboVir3\t158\t7\t0\n+eboVir3\t159\t7\t0\n+eboVir3\t160\t7\t0\n+eboVir3\t161\t7\t0\n+eboVir3\t162\t7\t0\n+eboVir3\t163\t7\t0\n+eboVir3\t164\t7\t0\n+eboVir3\t165\t7\t0\n+eboVir3\t166\t7\t0\n+eboVir3\t167\t7\t0\n+eboVir3\t168\t7\t0\n+eboVir3\t169\t7\t0\n+eboVir3\t170\t7\t0\n+eboVir3\t171\t7\t0\n+eboVir3\t172\t7\t0\n+eboVir3\t173\t7\t0\n+eboVir3\t174\t7\t0\n+eboVir3\t175\t7\t0\n+eboVir3\t176\t7\t0\n+eboVir3\t177\t7\t0\n+eboVir3\t178\t7\t0\n+eboVir3\t179\t6\t0\n+eboVir3\t180\t6\t0\n+eboVir3\t181\t6\t0\n+eboVir3\t182\t6\t0\n+eboVir3\t183\t6\t0\n+eboVir3\t184\t6\t0\n+eboVir3\t185\t6\t0\n+eboVir3\t186\t5\t0\n+eboVir3\t187\t5\t0\n+eboVir3\t188\t5\t0\n+eboVir3\t189\t5\t0\n+eboVir3\t190\t4\t0\n+eboVir3\t191\t4\t0\n+eboVir3\t192\t4\t0\n+eboVir3\t193\t3\t0\n+eboVir3\t194\t3\t0\n+eboVir3\t195\t3\t0\n+eboVir3\t196\t3\t0\n+eboVir3\t197\t3\t0\n+eboVir3\t198\t3\t0\n+eboVir3\t199\t3\t0\n+eboVir3\t200\t4\t0\n+eboVir3\t201\t4\t0\n+eboVir3\t202\t4\t0\n+eboVir3\t203\t4\t0\n+eboVir3\t204\t3\t0\n+eboVir3\t205\t3\t0\n+eboVir3\t206\t3\t0\n+eboVir3\t207\t3\t0\n+eboVir3\t208\t3\t0\n+eboVir3\t209\t3\t0\n+eboVir3\t210\t2\t0\n+eboVir3\t211\t2\t0\n+eboVir3\t212\t2\t0\n+eboVir3\t213\t2\t0\n+eboVir3\t214\t2\t0\n+eboVir3\t215\t2\t0\n+eboVir3\t216\t2\t0\n+eboVir3\t217\t2\t0\n+eboVir3\t218\t2\t0\n+eboVir3\t219\t2\t0\n+eboVir3\t220\t2\t0\n+eboVir3\t221\t2\t0\n+eboVir3\t222\t1\t0\n+eboVir3\t223\t1\t0\n+eboVir3\t224\t1\t0\n+eboVir3\t225\t1\t0\n+eboVir3\t226\t1\t0\n+eboVir3\t227\t1\t0\n+eboVir3\t228\t1\t0\n+eboVir3\t229\t1\t0\n+eboVir3\t230\t1\t0\n+eboVir3\t231\t1\t0\n+eboVir3\t232\t1\t0\n+eboVir3\t233\t1\t0\n+eboVir3\t234\t1\t0\n+eboVir3\t235\t1\t0\n+eboVir3\t236\t1\t0\n+eboVir3\t237\t1\t0\n+eboVir3\t238\t1\t0\n+eboVir3\t239\t1\t0\n+eboVir3\t240\t1\t0\n+eboVir3\t241\t1\t0\n+eboVir3\t242\t1\t0\n+eboVir3\t243\t1\t0\n+eboVir3\t244\t1\t0\n+eboVir3\t245\t1\t0\n+eboVir3\t246\t1\t0\n+eboVir3\t247\t1\t0\n+eboVir3\t248\t1\t0\n+eboVir3\t249\t'..b'8747\t7\t0\n+eboVir3\t18748\t7\t0\n+ebo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