| Previous changeset 4:971dc85e9441 (2023-11-20) |
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Commit message:
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools/samtools_depth commit c508c3af0f4121dcc38e0be63db00a604e997b8a |
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modified:
macros.xml samtools_depth.xml |
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| diff -r 971dc85e9441 -r 772919943459 macros.xml --- a/macros.xml Mon Nov 20 22:14:44 2023 +0000 +++ b/macros.xml Thu Jun 19 12:58:55 2025 +0000 |
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| @@ -11,9 +11,9 @@ please only bump the minor version in order to let the requirement version catch up eventually). To find the tools check: `grep "<tool" . -r | grep -v VERSION_SUFFIX | cut -d":" -f 1` --> - <token name="@TOOL_VERSION@">1.15.1</token> - <token name="@VERSION_SUFFIX@">2</token> - <token name="@PROFILE@">20.05</token> + <token name="@TOOL_VERSION@">1.21</token> + <token name="@VERSION_SUFFIX@">0</token> + <token name="@PROFILE@">22.05</token> <token name="@FLAGS@"><![CDATA[ #set $flags = 0 #if $filter @@ -220,6 +220,7 @@ <xml name="citations"> <citations> <citation type="doi">10.1093/gigascience/giab008</citation> + <citation type="doi">10.1093/bioinformatics/btr076</citation> </citations> </xml> <xml name="version_command"> |
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| diff -r 971dc85e9441 -r 772919943459 samtools_depth.xml --- a/samtools_depth.xml Mon Nov 20 22:14:44 2023 +0000 +++ b/samtools_depth.xml Thu Jun 19 12:58:55 2025 +0000 |
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| @@ -135,19 +135,25 @@ <param name="input_bed" value="eboVir3.1.bed" ftype="bed" /> </conditional> <param name="input_bams" value="eboVir3.bam" ftype="bam" /> - <param name="header" value="true" /> + <section name="output_options"> + <param name="header" value="true" /> + </section> <output name="output" file="samtools_depth_out5.tab" /> </test> <!-- 6) Tetsing argument -g --> <test> <param name="input_bams" value="eboVir3.bam" ftype="bam" /> - <param name="required_flags" value="2,16,64" /> + <section name="additional_options"> + <param name="required_flags" value="2,16,64" /> + </section> <output name="output" file="samtools_depth_out6.tab" /> </test> <!-- 7) Tetsing argument -G --> <test> <param name="input_bams" value="eboVir3.bam" ftype="bam" /> - <param name="skipped_flags" value="2,16,64" /> + <section name="additional_options"> + <param name="skipped_flags" value="2,16,64" /> + </section> <output name="output" file="samtools_depth_out7.tab" /> </test> </tests> |