Repository 'deeptools_plot_coverage'
hg clone https://toolshed.g2.bx.psu.edu/repos/bgruening/deeptools_plot_coverage

Changeset 29:231994413f89 (2023-09-27)
Previous changeset 28:9368fbc49c8b (2023-06-01)
Commit message:
planemo upload for repository https://github.com/deeptools/deepTools/tree/master/galaxy/wrapper/ commit 4a4029b5c2e725b7cebc27217b76d23910508412
modified:
deepTools_macros.xml
test-data/heatmapper_result1.png
test-data/heatmapper_result2.png
test-data/plotCorrelation_result2.png
test-data/plotFingerprint_quality_metrics.tabular
test-data/profiler_result1.png
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diff -r 9368fbc49c8b -r 231994413f89 deepTools_macros.xml
--- a/deepTools_macros.xml Thu Jun 01 14:39:07 2023 +0000
+++ b/deepTools_macros.xml Wed Sep 27 20:21:56 2023 +0000
[
@@ -1,8 +1,8 @@
 <macros>
 
     <token name="@THREADS@">--numberOfProcessors "\${GALAXY_SLOTS:-4}"</token>
-    <token name="@TOOL_VERSION@">3.5.2</token>
-    <token name="@GALAXY_VERSION@">20.01</token>
+    <token name="@TOOL_VERSION@">3.5.4</token>
+    <token name="@GALAXY_VERSION@">22.05</token>
     <xml name="requirements">
         <requirements>
             <requirement type="package" version="@TOOL_VERSION@">deeptools</requirement>
@@ -441,12 +441,15 @@
  <when value="No">
  </when>
  <when value="Yes">
-     <param argument="--labels" type="text" label="Sample Labels" help="Labels, separated by a space. If your labels themselves contain spaces then please enclose them in quotes (e.g., &quot;sample 1&quot; &quot;sample 2&quot;)">
-                <sanitizer>
-                    <valid initial="string.printable">
-                    </valid>
-                </sanitizer>
-            </param>
+     <param argument="--labels" type="text" label="Sample Labels" help="Labels, separated by a space. If your labels themselves contain spaces then please enclose them in quotes (e.g., &apos;sample 1&apos;; &apos;sample 2&apos;)">
+            <sanitizer>
+                <valid initial="string.letters,string.digits,string.whitespace">
+                    <add value="&apos;" />
+                    <add value="_" />
+                </valid>
+            </sanitizer>
+            <validator type="regex">[A-Za-z0-9 =-_/+]+</validator>
+        </param>
  </when>
         </conditional>
     </xml>
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diff -r 9368fbc49c8b -r 231994413f89 test-data/heatmapper_result1.png
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diff -r 9368fbc49c8b -r 231994413f89 test-data/heatmapper_result2.png
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diff -r 9368fbc49c8b -r 231994413f89 test-data/plotCorrelation_result2.png
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diff -r 9368fbc49c8b -r 231994413f89 test-data/plotFingerprint_quality_metrics.tabular
--- a/test-data/plotFingerprint_quality_metrics.tabular Thu Jun 01 14:39:07 2023 +0000
+++ b/test-data/plotFingerprint_quality_metrics.tabular Wed Sep 27 20:21:56 2023 +0000
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@@ -1,3 +1,3 @@
 Sample AUC Synthetic AUC X-intercept Synthetic X-intercept Elbow Point Synthetic Elbow Point JS Distance Synthetic JS Distance % genome enriched diff. enrichment CHANCE divergence
-bowtie2 test1.bam 0.00493632029863651 0.481650684757865 0.984443061605476 1.1531044350267195e-24 0.9849408836341008 0.5232688298112538 nan 0.2690044980681214 nan nan nan
-bowtie2 test1.bam 0.00493632029863651 0.481650684757865 0.984443061605476 1.1531044350267195e-24 0.9849408836341008 0.5232688298112538 0.0 0.2690044980681214 0 0 0
+bowtie2 test1.bam 0.00493632029863651 0.481650684757865 0.984443061605476 1.1531044350267195e-24 0.9849408836341008 0.5232688298112538 nan 0.269004498068121 nan nan nan
+bowtie2 test1.bam 0.00493632029863651 0.481650684757865 0.984443061605476 1.1531044350267195e-24 0.9849408836341008 0.5232688298112538 0.0 0.269004498068121 0 0 0
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diff -r 9368fbc49c8b -r 231994413f89 test-data/profiler_result1.png
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