Previous changeset 1:e34bdac5b157 (2018-03-28) Next changeset 3:728d459bafe8 (2020-06-29) |
Commit message:
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mz_to_sqlite commit ae0093d9f1576f38aee83b2ed5e7f70c901d5864 |
modified:
mz_to_sqlite.xml |
added:
test-data/sqlite.db test-data/test.fasta test-data/test.mgf test-data/test_id.mzid |
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diff -r e34bdac5b157 -r 1320693cbf1e mz_to_sqlite.xml --- a/mz_to_sqlite.xml Wed Mar 28 09:33:18 2018 -0400 +++ b/mz_to_sqlite.xml Mon Feb 11 17:30:46 2019 -0500 |
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@@ -1,7 +1,7 @@ -<tool id="mz_to_sqlite" name="mz to sqlite" version="2.0.0"> +<tool id="mz_to_sqlite" name="mz to sqlite" version="2.0.2"> <description>Extract mzIdentML and associated proteomics datasets into a SQLite DB</description> <requirements> - <requirement type="package" version="2.0.0">mztosqlite</requirement> + <requirement type="package" version="2.0.2">mztosqlite</requirement> </requirements> <stdio> <exit_code range="1:" level="fatal" description="Error Running mz_to_sqlite" /> @@ -38,6 +38,10 @@ </outputs> <tests> <test> + <param name="mzinput" value="test_id.mzid" ftype="mzid"></param> + <param name="scanfiles" value="test.mgf" ftype="mgf"></param> + <param name="searchdbs" value="test.fasta" ftype="fasta"></param> + <output name="sqlite_db" file="sqlite.db" /> </test> </tests> <help> @@ -46,4 +50,5 @@ ]]> </help> + <citations></citations> </tool> |
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diff -r e34bdac5b157 -r 1320693cbf1e test-data/sqlite.db |
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Binary file test-data/sqlite.db has changed |
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diff -r e34bdac5b157 -r 1320693cbf1e test-data/test.fasta --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/test.fasta Mon Feb 11 17:30:46 2019 -0500 |
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b'@@ -0,0 +1,26 @@\n+>sp|Q8C4J7|TBL3_MOUSE Transducin beta-like protein 3 OS=Mus musculus GN=Tbl3 PE=2 SV=1\n+MAETAAGLCRFKANYAVERKIEPFYKGGKAQLDQTGHYLFCVCGTKVNILDVASGALLRSLEQEDQEDITSFDLSPDDEVLVTASRALLLAQWAWREGTVTRLWKAIHTAPVASMAFDATSTLLATGGCDGAVRVWDIVQHYGTHHFRGSPGVVHLVAFHPDPTRLLLFSSAVDTSIRVWSLQDRSCLAVLTAHYSAVTSLSFSEGGHTMLSSGRDKICIVWDLQSYQTTRTVPVFESVEASVLLPEQPAPALGVKSSGLHFLTAGDQGILRVWEAASGQCVYTQPQMPGLRQELTHCTLARAADLLLTVTADHNLLLYEAHSLQLQKQFAGYSEEVLDVRFLGPSDSHIVVASNSPCLKVFELQTLACQILHGHTDIVLALDVFRKGWLFASCAKDQSIRIWKMNKAGQVACVAQGSGHTHSVGTICCSRLKESFLVTGSQDCTVKLWPLPEALLAKSTAADSGPVLLQAQTTRRCHDKDINSLAVSPNDKLLATGSQDRTAKLWALPQCQLLGVFTGHRRGLWNVQFSPTDQVLATASADGTIKLWALQDFSCLKTFEGHDASVLKVAFVSRGSQLLSSGSDGLLKLWTIKSNECVRTLDAHEDKVWGLHCSQLDDHAITGGSDSRIILWKDVTEAEQAEEQAKREEQVIKQQELDNLLHEKRYLRALGLAISLDRPHTVLTVIQAIRRDPEACEKLEATVLRLRRDQKEALLRFCVTWNTNSRHCHEAQAVLGVLLRHEAPEELLAYDGVRGSLEALLPYTERHFQRLSRTLQAATFLDFLWHNMKLSPCPAAAPPAL\n+>tr|Q80ZP8|Q80ZP8_MOUSE Armet protein OS=Mus musculus GN=Manf PE=1 SV=1\n+METNNYLPSPPSFPVCISYLGRFYQDLKDRDVTFSPATIEEELIKFCREARGKENRLCYYIGATDDAATKIINEVSKPLAHHIPVEKICEKLKKKDSQICELKYDKQIDLSTVDLKKLRVKELKKILDDWGEMCKGCAEKSDYIRKINELMPKYAPKAASARTDL\n+>sp|Q60847|COCA1_MOUSE Collagen alpha-1(XII) chain OS=Mus musculus GN=Col12a1 PE=2 SV=3\n+MQTRLPRALAALGVALLLSSIEAEVDPPSDLNFKIIDENTVHMSWERPVDPIVGYRITVDPTTDGPTKEFTLAASTTETLLSDLIPETQYVVTITSYNEVEESVPVIGQLTIQTGGPTKPGEKKPGKTEIQKCSVSAWTDLVFLVDGSWSVGRNNFKYILDFIVALVSAFDIGEEKTRVGVVQYSSDTRTEFNLNQYYRREDLLAAVKKIPYKGGNTMTGDAIDYLVKNTFTESAGSRAGFPKVAIIITDGKSQDEVEIPARELRNIGVEVFSLGIKAADAKELKQIASTPSLNHVFNVANFDAIVDIQNEIISQVCSGVDEQLGELVSGEEVIEPPSNLVVTELSSKYIRLSWDPSPSAVTGYKILLTPMAAGSRHHALSVGPQTTTLNVRDLTADTEYQISVFAMKGLTSSEPTSVMEKTQPMKVQVECSRGVDIKADIVFLVDGSYSIGIANFVKVRAFLEVLAKSFEISPNRVQISLVQYSRDPHTEFTLKEFNRVEDIIKAINTFPYRGGSTNTGKAMTYVREKIFVPNKGSRSNVPKVMILITDGKSSDAFRDPAIKLRNSDVEIFAVGVKDAVRSELEAIASPPAETHVFTVEDFDAFQRISFELTQSICLRIEQELAAIKKKAYVPPKDLRFTQVTANSFKAEWSPPGDNVFSYHVTYKDANGDDEVTVVEPASSTSVVLNNLRPETLYLVNVTAEYEDGFSVPITGEETTAEVKGVPRNLKVTDETTDSFKLTWSQAPGRVLRYRIRYRPVSGGESKEVSTPANQRRKTLENLTPDTKYEISVIAEYSSGPGSPLTGNAATEEVRGNPRDLRVSDATTSTLKLSWSRAPGKVKQYLVTYTPAAGGETQEVTVRGDTTTTMLRKLKEGTQYDLSVTALYASGAGEALSGKGSTLEERGSPQNLVTKDITDTSIGAYWTSAPGMVRGYRVSWKSLYDDIEAGETTLPGDAIHTMIENLQPETKYKISVFATYSSGEGEPVTGDATTELSQDSKILRVDEETEHTMRVTWKAAPGKVVNYRVVYRPQGGGRQMVAKVPPTVTSTVLKRLQPQTTYDITVLPMYKTGEGKLRQGSGTTASRFKSPRNLKTSDPTMSSFRVTWEPAPGEVKGYKVTFHPTGDDRRLGELVLGPYDNTVVLEELRAGTTYRVNVFGMFDGGESLPLVGQEMTTLSDTTVTPFLSSGMDCLTRAEADIVLLVDGSWSIGRANFRTVRSFISRIVEVFEIGPKRVQIALAQYSGDPRTEWQLNAHRDKKSLLQAVANLPYKGGNTLTGMALNFIRQQSFKTQAGMRPRARKIGVLITDGKSQDDVEAPSKKLKDEGVELFAIGIKNADEVELKMIATDPDDTHAYNVADFESLSKIVDDLTINLCNSVKGPGDLEAPTNLVISERTHRSFRVSWTPPSDSVDRYKVEYYPVSGGKRQEFYVSRLDTSTVLKDLKPETDYVVNVYSVVEDEYSEPLKGTEKTLPVPVVSLNIYDVGPTTMHVQWQPVGGATGYTVSYQPTRSPEGTKPKEMRVGPTVNDVQLTGLLPNTEYEVTVQAVLYDLTSEPAKAREVTLPLPRPQDVKLRDVTHSTMNVVWEPVLGKVRKYIVRYKTPDEEFKEVEVDRSRASTILKDLSSQTQYTVSVSAVYDEGTSPPATAYDTTRRVPAPTNLQFTEVTPESFRGTWDHGASDVSLYRITWAPVGNPDKMETILNGDENTLVFENLNPNTPYEVSITAIYPDESESEDLSGTERTLRLIPLTTQAPKSGPRNLQVYNATSNSLTVKWDPASGRVQKYRITYQPSTGEGNEQTITVGGRQNSVLLQKLKPDTPYTITVYSQYPDGEGGRMTGRGKTKPLNTVRNLRVYDPSTSSLSVRWDHAEGNPRQYKLFYAPTSGGPEELVPIPGNTNYAILRNLQPDTPYTITVVPVYTEGDGGRTSDTGRTLVRGLARNIQVYNPTPNSLDVRWDPAPGPVQQYRIVYSPVAGTRPSESIVVPGNTRTVHLERLIPDTPYSVNIVALYSDGEGNPSPSQGRTLPRSGPRNIRVFGETTNSLSVAWDHADGPVQQYRIIYSPTVGDPIDEYTTVPGRRNNVILQPLQPDTPYKITVIAIYEDGDGGHLTGNGRTVGLLPPQNIHIFDEWYTRFRVSWDPSPSPVLGYKIVYKPVGSNEPMEAFVGEVTSYTLHNLNPSTTYDVSVYAQYDSGLSVPLTDQGTTLYLNVTDLKTYQVGWDTFCVKWSPHRAATSYRLKLSPADGTRGQEITVRGSETSHCFTGLSPEAEYGVTVFVQTPNLEGPGVPIKEQTTVKPTEAPTEPPTPSPPPTIPPARDVCKGAKADIVFLTDASWSIGDDNFNKVVKFIFNTVGAFDEVNPAGIQVSFVQYSDEVKSEFKLNTYNDKALALGALQNIRYRGGNTRTGKALTFIKEKVLTWESGMRKNVPKVLVVVTDGRSQDEVKKAAFVIQQSGFSVFVVGVADVDYNELANIASKPSERHVFIVDDFESFEKIEDNLITFVCETATSSCPLIYLDGYTSPGFKMLEAYNLTEKNFASVQGVSLESGSFPSYSAYRLQKNAFINQPTAELHPNGLPPSYTIILLFRLLPETPSDPFAIWQITDRDYRPQVGVIADPSSKTLSFFNKDTRGEVQTVTFDTDEVKTLFYGSFHKVHIVVTSKSVKIYIDCYEIIEKDIKEAGNITTDGYEILGKLLKGERKSATFQIQSFDIVCSPVWTSRDRCCDIPSRRDEAKCPALPNACTCTQDSVGPPGPPGPAGGPG'..b'RAGFRSNVLTGSAPQQDFDKLKALGGENSSKTGVSTSGHTDKNKVKREAESNSITLSVYEPFKVRKAEDKLKENSEKMLESRVLDGKPSSEKSDSGIAAAASSKTKPSSKLSSCIAAIAALSAKKAASDSCKEPVANSREASPLPKEVNDSPKAADKSPESQNLIDGTKKASLKPSDSPRSVSSENSSKGSPSSPVGSTPAIPKVRIKTIKTSSGEIKRTVTRVLPEVDLDSGKKPSEQAASVMASVTSLLSSSASATVLSSPPRAPLQTAMVTSAVSSAELTPKQVTIKPVATAFLPVSAVKTAGSQVINLKLANNTTVKATVISAASVQSASSAIIKAANAIQQQTVVVPASSLANAKLVPKTVHLANLNLLPQGAQATSELRQVLTKPQQQIKQAIINAAASQPPKKVSRVQVVSSLQSSVVEAFNKVLSSVNPVPVYTPNLSPPANAGITLPMRGYKCLECGDAFALEKSLSQHYDRRSVRIEVTCNHCTKNLVFYNKCSLLSHARGHKEKGVVMQCSHLILKPVPADQMIVPPSSNTAASTLQSSVGAATHTVPKVQPGIAGAVISAPASTPMSPAMPLDEDPSKLCRHSLKCLECNEVFQDEPSLATHFQHAADTSGQQMKKHPCRQCDKSFSSSHSLCRHNRIKHKGIRKVYACSHCPDSRRTFTKRLMLERHIQLMHGIKDPDVKELSDDAGDVTNDEEEEAEIKEDAKVPSPKRKLEEPVLEFRPPRGAITQPLKKLKINVFKVHKCAVCGFTTENLLQFHEHIPQHRSDGSSHQCRECGLCYTSHGSLARHLFIVHKLKEPQPVSKQNGAGEDSQQENKPSPEDEAAEGAASDRKCKVCAKTFETEAALNTHMRTHGMAFIKSKRMSSAEK\n+>sp|P58006|SESN1_MOUSE Sestrin-1 OS=Mus musculus GN=Sesn1 PE=1 SV=3\n+MRLAAASNEAYAASLAVSELLSCHQCGGDRGQDEELGIRIPRPLGHGPSRFIPEKEMLQVGSEDAQMHALFADSFAALGRLDNITLVMVFHPQYLESFLKTQHYLLQMDGPLPLHYRHYIGIMAAARHQCSYLVNLHVSDFLHVGGDPKWLNGLENAPQKLQNLGELNKVLAHRPWLITKEHIEGLLKAEEHSWSLAELVHAVVLLTHYHSLASFTFGCGISPEIHCDGGHTFRPPSVSNYCICDITNGNHSVDEMQVNSAGNASVSDSFFEVEALMEKMRQLQECREEEEASQEEMASRFEMEKRESMFVFSSDDDEVTPARDVSRHFEDTSYGYKDFSRHGMHVPTFRVQDYCWEDHGYSLVNRLYPDVGQLIDEKFHIAYNLTYNTMAMHKDVDTSMLRRAIWNYIHCMFGIRYDDYDYGEINQLLDRSFKVYIKTVVCTPEKVTKRMYDSFWRQFKHSEKVHVNLLLIEARMQAELLYALRAITRYMT\n+>tr|A0A1B0GSE5|A0A1B0GSE5_MOUSE Ubiquitin carboxyl-terminal hydrolase CYLD OS=Mus musculus GN=Cyld PE=1 SV=1\n+MSSGLWSQEKVTSPYWEERIFYLLLQECSVTDKQTQKLLKVPKGSIGQYIQDRSVGHSRVPSTKGKKNQIGLKILEQPHAVLFVDEKDVVEINEKFTELLLAITNCEERLSLFRNRLRLSKGLQVDVGSPVKVQLRSGEEKFPGVVRFRGPLLAERTVSGIFFGVELLEEGRGQGFTDGVYQGKQLFQCDEDCGVFVALDKLELIEDDDNGLESDFAGPGDTMQVEPPPLEINSRVSLKVGESTESGTVIFCDVLPGKESLGYFVGVDMDNPIGNWDGRFDGVQLCSFASVESTILLHINDIIPDSVTQERRPPKLAFMSRGVGDKGSSSHNKPKVTGSTSDPGSRNRSELFYTLNGSSVDSQQSKSKNPWYIDEAFGGYLSEVVEENTPPKMEKEGLEIMIGKKKGIQGHYNSCYLDSTLFCLFAFSSALDTVLLRPKEKNDIEYYSETQELLRTEIVNPLRIYGYVCATKIMKLRKILEKVEAASGFTSEEKDPEEFLNILFHDILRVEPLLKIRSAGQKVQDCNFYQIFMEKNEKVGVPTIQQLLEWSFINSNLKFAEAPSCLIIQMPRFGKDFKLFKKIFPSLELNITDLLEDTPRQCRICGGLAMYECRECYDDPDISAGKIKQFCKTCSTQVHLHPRRLNHSYHPVSLPKDLPDWDWRHGCIPCQKMELFAVLCIETSHYVAFVKYGKDDSAWLFFDSMADRDGGQNGFNIPQVTPCPEVGEYLKMSLEDLHSLDSRRIQGCARRLLCDAYMCMYQSPTMSLYK\n+>sp|Q60880|OL141_MOUSE Olfactory receptor 141 OS=Mus musculus GN=Olfr141 PE=3 SV=2\n+MRNITEATFFVLKGLTDNNELQIILFLLFLAIYIFTLIGNVGLIILVVGDSQLHNPMYCFLSVLSSVDACYSTDITPNMLVGFMSKSKIISFYGCATQMFLAVTFGTTECFLLAAMAYDRYVAIHDPLLYAVSMSPRVYIPLIIASYAGGIVHAIIHTVATFSLSFCRSNEVKHIFCDIPPLLAISCSETYVNELLLFFFVSFIELVTILIVLVSYAFILLSILKMNSSEGRRKVFSTCGAHLTAVSIYYGTILFMYVRPSSNYSLEHDMIVSTFYTIGIPMLNPIIYSLRNKDVKEAMKRVLRKKINIKHRIKKLNDFSVFLMP\n+>tr|L7N477|L7N477_MOUSE Killer cell lectin-like receptor subfamily C, member 3 OS=Mus musculus GN=Klrc3 PE=4 SV=1\n+MSHLLGTEQASEPRKATKKTQAQLRFSNAAGDRLLEFSLQHASQKHLKASRHGYCKNFASPPEKLIAGILGTIWFTLLIALVISTRIVSPSQTYALCPKEWILYSHNCYYIGMERKSWNDSLVSCISKNCSLLYIDSEEEQDFLQSLSLVSWTGILRKGRGQPWVWKKDSTFKPKIAEILHDECNCAMMSASGLTADSCTTLHPYLCKCKFPI\n+>tr|J3QMI4|J3QMI4_MOUSE Calcium homeostasis modulator 3 OS=Mus musculus GN=Calhm3 PE=4 SV=1\n+MDRFRMLFQHLQSSSESVMNGICLLLAAVTVKIYSSLDFNCPCLERYNALYGLGLLLTPPLALFLCGLLVNRQSVLMVEEWRRPAGHRRKDLGIIRYMCSSVLQRALAAPLVWILLALLDGKCFVCAFSNSVDPEKFLDFANMTPRQVQLFLAKVPCKEDELVKNSPARKAVSRYLRCLSQAIGWSITLLVIVVAFLARCLRPCFDQTVFLQRRYWSNYMDLEQKLFDETCCEHARDFAHRCVLHFFANMQSELRALGLRRDPAGGIPESQESSEPPELREDRDSGNGKAHLRAISSREQVDQLLSTWYSSKPPLDLAASPRRWGPGLNHRAPIAAPGTKLCHQLNV\n+>sp|B1AZ99|OTUD3_MOUSE OTU domain-containing protein 3 OS=Mus musculus GN=Otud3 PE=1 SV=1\n+MSRKQAAKSRPGSGGRRAEAERKRDERAARRALAKERRNRPDPGGSGCEEEFVSFANQLQALGLKLREVPGDGNCLFRALGDQLEGHSRNHLKHRQETVDYMIRQREDFEPFVEDDIPFEKHVASLSKPGTFAGNDAIVAFARNHQLNVVIHQLNAPLWQIRGTDKGSTRELHIAYRYGEHYDSVRRINDNSEAPAHLLTDFQMLHQDGANKKEKMKTKGVDVKDGLRDDVEDAVHKVGSATGCTDFNLIVQNLEAENYNIKSAITALLQVNQGTGNDAEENHEPGDRVKQRGPSREEAGSGRRLSGNQGRNEGRMETSEARASPAEESKAHKSQLPKVTNKQRREQQRLEKKKRQEERHRLKALENRNGSRDTGRSEADMNTQVTLVKTFAALNI\n' |
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diff -r e34bdac5b157 -r 1320693cbf1e test-data/test.mgf --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/test.mgf Mon Feb 11 17:30:46 2019 -0500 |
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@@ -0,0 +1,209 @@ +COM=Conversion to mascot generic +CHARGE=2+ and 3+ +BEGIN IONS +PEPMASS=356.204468 +CHARGE=2+ +SCANS=949 +TITLE=Mo_Tai_iTRAQ_f8.00949.00949.2 +110.828506 2491.272705 +112.094696 13699.349609 +113.091728 18020.962891 +114.110344 1125576.500000 +115.107330 1100947.250000 +116.110695 22822.193359 +119.096985 2535.831299 +126.174309 2810.447998 +127.046684 6835.585449 +128.049973 7331.433594 +128.189621 2914.005371 +129.101974 2570.599609 +129.279678 2607.758545 +132.757004 5481.246582 +143.090988 7752.233887 +143.097107 5783.437012 +143.102463 6564.677734 +143.108566 2564.047363 +144.098862 5652.665039 +144.104889 7361.954590 +145.102219 4936.177734 +145.107025 146758.843750 +145.112335 131714.093750 +147.123001 2650.172119 +147.128372 2737.861816 +148.005478 2639.512939 +148.238419 2869.093750 +155.299225 3088.353027 +158.077728 2793.953369 +162.139252 4774.894531 +162.387039 2827.835449 +165.678162 2818.111328 +166.938889 2684.265625 +167.580872 2939.096680 +175.140564 5432.401855 +175.147156 3378.035156 +183.266129 2539.922852 +183.412628 2670.645752 +184.894104 2803.014893 +185.091522 3216.686035 +187.330780 2998.108643 +188.148529 5007.840332 +188.155151 4465.146973 +195.075851 3438.550293 +200.147873 24339.453125 +200.155838 26661.476563 +201.119965 10145.449219 +201.126175 6782.928711 +202.134979 3300.751221 +212.101944 4973.188477 +216.179565 7723.956055 +220.137726 5468.829102 +226.145721 4482.779785 +228.143005 29964.037109 +228.149582 35742.863281 +228.177368 17399.912109 +228.186249 14105.214844 +233.847382 3023.852539 +237.328430 2774.574463 +246.153275 5242.495117 +246.188858 4635.713867 +247.078400 2846.372314 +247.229568 3600.163818 +252.681946 17567.197266 +252.687744 11091.435547 +257.160217 2689.109863 +258.143890 8518.477539 +259.193176 5211.037598 +260.112854 2996.645508 +265.560181 3225.694824 +267.997864 3700.312744 +268.610748 2618.740479 +273.650787 2803.174316 +274.679718 22228.267578 +274.878204 2877.273682 +276.155609 4863.589355 +280.178680 6539.792480 +280.683990 7219.905762 +281.182739 73752.156250 +281.680695 11313.489258 +285.008820 7076.163574 +286.008789 13322.283203 +287.492432 2768.095459 +288.190704 10070.780273 +289.212860 10554.054688 +290.215210 8197.624023 +291.214630 224196.781250 +292.144562 17330.738281 +292.216919 9077.991211 +294.200745 3728.015869 +294.694580 2759.699951 +295.199768 21009.978516 +295.677765 2779.048828 +295.697662 2965.697998 +301.196075 14519.786133 +302.192566 13183.798828 +302.681702 3274.821045 +303.182465 26307.968750 +304.200134 16413.566406 +308.134003 3247.440674 +309.692322 3523.904541 +310.200165 4997.131348 +310.689606 5659.117676 +314.701416 3665.613525 +315.196594 17897.263672 +315.694458 7221.386230 +322.705383 10645.053711 +323.201050 144162.281250 +323.709473 775901.062500 +324.202362 1445754.250000 +329.190155 6962.873535 +331.171021 5107.174316 +342.255768 3228.923828 +345.230133 4261.129883 +346.701050 7799.938965 +347.194824 2865.516113 +347.688904 5667.636719 +348.197693 24573.441406 +348.233978 5957.279785 +348.692688 25993.126953 +355.150269 4949.070313 +355.174652 2909.161377 +355.204315 14366.736328 +355.708588 75645.015625 +356.069336 6637.967773 +356.134460 13835.235352 +356.202423 120693.640625 +357.188660 16815.277344 +359.191010 6374.648438 +359.210419 3294.687256 +369.224609 3175.326660 +371.329681 3001.630615 +374.215424 34076.957031 +374.250427 13415.376953 +375.198608 45562.394531 +380.471497 3438.794189 +384.042755 2828.394043 +384.233093 3161.169678 +386.881042 3011.077881 +388.835114 3405.797363 +388.912476 2871.228760 +390.210266 6639.722168 +392.209045 4713.115723 +393.195221 4687.627441 +401.264465 37685.667969 +402.246643 145106.453125 +403.250397 14226.839844 +404.223999 3190.761475 +406.204926 9580.385742 +417.220215 9699.318359 +417.257477 9506.871094 +418.205566 9361.549805 +418.253967 9258.392578 +419.273285 87147.929688 +420.256622 156809.703125 +421.189087 5501.845215 +429.258087 8062.255859 +430.242737 14485.661133 +431.274200 6112.059082 +432.241486 5955.781250 +433.228119 9966.237305 +435.205902 2964.356445 +438.212616 8717.499023 +439.198639 11913.517578 +441.878082 2893.906494 +442.281189 5167.858887 +445.253510 3384.076172 +445.289856 5610.796387 +446.234955 3694.613525 +457.289215 9395.412109 +467.271301 9033.137695 +468.256622 6531.868164 +474.277374 6496.598145 +475.266510 12334.884766 +476.296448 56116.445313 +477.277374 97097.773438 +483.278931 3317.250244 +484.297638 7861.101074 +485.283264 40491.058594 +500.063904 3317.183105 +501.286499 36715.671875 +502.309967 507225.437500 +503.293182 868823.875000 +504.296600 21048.537109 +504.326172 13437.491211 +505.307159 13403.533203 +535.264282 3424.624268 +539.916931 3302.101318 +548.299927 5319.335449 +548.877441 3060.022705 +549.283264 12761.772461 +551.285889 5062.984863 +552.265686 6901.311035 +562.301086 3297.966309 +564.321716 7031.061035 +565.314087 6086.279297 +566.308350 57366.886719 +567.291321 87307.140625 +568.995239 3542.976563 +682.357788 3350.750488 +688.612488 3475.960205 +END IONS |
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diff -r e34bdac5b157 -r 1320693cbf1e test-data/test_id.mzid --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/test_id.mzid Mon Feb 11 17:30:46 2019 -0500 |
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b'@@ -0,0 +1,392 @@\n+<?xml version="1.0" encoding="UTF-8"?>\n+<MzIdentML id="PeptideShaker v1.16.9" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://psidev.info/psi/pi/mzIdentML/1.1 http://www.psidev.info/files/mzIdentML1.1.0.xsd" xmlns="http://psidev.info/psi/pi/mzIdentML/1.1" version="1.1.0" creationDate="2018-01-19T02:00:07">\n+\t<cvList>\n+\t\t<cv id="PSI-MS" uri="https://raw.githubusercontent.com/HUPO-PSI/psi-ms-CV/master/psi-ms.obo" fullName="PSI-MS"/>\n+\t\t<cv id="UNIMOD" uri="http://www.unimod.org/obo/unimod.obo" fullName="UNIMOD"/>\n+\t\t<cv id="UO" uri="https://raw.githubusercontent.com/bio-ontology-research-group/unit-ontology/master/unit.obo" fullName="UNIT-ONTOLOGY"/>\n+\t\t<cv id="PRIDE" uri="https://github.com/PRIDE-Utilities/pride-ontology/blob/master/pride_cv.obo" fullName="PRIDE"/>\n+\t</cvList>\n+\t<AnalysisSoftwareList>\n+\t\t<AnalysisSoftware name="PeptideShaker" version="1.16.9" id="ID_software" 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