| Previous changeset 22:e5c8afac22a7 (2019-02-04) Next changeset 24:71bacea10eee (2020-02-29) |
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Commit message:
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/deseq2 commit 9ed3d83cc447ee897af867362bf1dd67af8a11c2 |
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modified:
get_deseq_dataset.R |
| b |
| diff -r e5c8afac22a7 -r 0696db066a5b get_deseq_dataset.R --- a/get_deseq_dataset.R Mon Feb 04 16:45:12 2019 -0500 +++ b/get_deseq_dataset.R Tue Mar 26 06:25:00 2019 -0400 |
| b |
| @@ -10,11 +10,11 @@ if (!is.null(tximport)) { if (is.null(tx2gene)) stop("A transcript-to-gene map or a GTF/GFF3 file is required for tximport") - if (tolower(file_ext(opt$tx2gene)) == "gff") { + if (tolower(file_ext(tx2gene)) == "gff") { gffFile <-tx2gene } else { gffFile <- NULL - tx2gene <- read.table(tx2gene, header=FALSE) + tx2gene <- read.table(tx2gene, header=hasHeader) } useTXI <- TRUE } else { |