Repository 'qiime2__diversity_lib__observed_features'
hg clone https://toolshed.g2.bx.psu.edu/repos/q2d2/qiime2__diversity_lib__observed_features

Changeset 1:c75e3e049c2f (2023-01-13)
Previous changeset 0:0eea854dbf4d (2022-08-29) Next changeset 2:f740751c2439 (2023-06-08)
Commit message:
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__diversity_lib commit 69da7976573cc07a363ac66bdacc9269d7cd3732
modified:
qiime2__diversity_lib__observed_features.xml
test-data/alpha_passthrough.test0.feature-table.qza
test-data/beta_passthrough.test0.feature-table.qza
test-data/beta_passthrough.test1.feature-table.qza
test-data/beta_passthrough.test2.feature-table.qza
test-data/beta_passthrough.test3.feature-table.qza
test-data/beta_phylogenetic_meta_passthrough.test0.feature-table1.qza
test-data/beta_phylogenetic_meta_passthrough.test0.feature-table2.qza
test-data/beta_phylogenetic_meta_passthrough.test0.phylogeny1.qza
test-data/beta_phylogenetic_meta_passthrough.test0.phylogeny2.qza
test-data/beta_phylogenetic_meta_passthrough.test1.feature-table1.qza
test-data/beta_phylogenetic_meta_passthrough.test1.feature-table2.qza
test-data/beta_phylogenetic_meta_passthrough.test1.phylogeny.qza
test-data/beta_phylogenetic_meta_passthrough.test2.feature-table1.qza
test-data/beta_phylogenetic_meta_passthrough.test2.feature-table2.qza
test-data/beta_phylogenetic_meta_passthrough.test2.phylogeny1.qza
test-data/beta_phylogenetic_meta_passthrough.test2.phylogeny2.qza
test-data/beta_phylogenetic_passthrough.test0.feature-table.qza
test-data/beta_phylogenetic_passthrough.test0.phylogeny.qza
test-data/beta_phylogenetic_passthrough.test1.feature-table.qza
test-data/beta_phylogenetic_passthrough.test1.phylogeny.qza
test-data/beta_phylogenetic_passthrough.test2.feature-table.qza
test-data/beta_phylogenetic_passthrough.test2.phylogeny.qza
test-data/beta_phylogenetic_passthrough.test3.feature-table.qza
test-data/beta_phylogenetic_passthrough.test3.phylogeny.qza
test-data/beta_phylogenetic_passthrough.test4.feature-table.qza
test-data/beta_phylogenetic_passthrough.test4.phylogeny.qza
test-data/beta_phylogenetic_passthrough.test5.feature-table.qza
test-data/beta_phylogenetic_passthrough.test5.phylogeny.qza
test-data/beta_phylogenetic_passthrough.test6.feature-table.qza
test-data/beta_phylogenetic_passthrough.test6.phylogeny.qza
test-data/bray_curtis.test0.feature-table.qza
test-data/bray_curtis.test1.feature-table.qza
test-data/bray_curtis.test2.feature-table.qza
test-data/faith_pd.test0.feature-table.qza
test-data/faith_pd.test0.phylogeny.qza
test-data/jaccard.test0.feature-table.qza
test-data/jaccard.test1.feature-table.qza
test-data/jaccard.test2.feature-table.qza
test-data/observed_features.test0.feature-table.qza
test-data/pielou_evenness.test0.feature-table.qza
test-data/pielou_evenness.test1.feature-table.qza
test-data/shannon_entropy.test0.feature-table.qza
test-data/shannon_entropy.test1.feature-table.qza
test-data/unweighted_unifrac.test0.feature-table.qza
test-data/unweighted_unifrac.test0.phylogeny.qza
test-data/unweighted_unifrac.test1.feature-table.qza
test-data/unweighted_unifrac.test1.phylogeny.qza
test-data/unweighted_unifrac.test2.feature-table.qza
test-data/unweighted_unifrac.test2.phylogeny.qza
test-data/unweighted_unifrac.test3.feature-table.qza
test-data/unweighted_unifrac.test3.phylogeny.qza
test-data/weighted_unifrac.test0.feature-table.qza
test-data/weighted_unifrac.test0.phylogeny.qza
test-data/weighted_unifrac.test1.feature-table.qza
test-data/weighted_unifrac.test1.phylogeny.qza
test-data/weighted_unifrac.test2.feature-table.qza
test-data/weighted_unifrac.test2.phylogeny.qza
test-data/weighted_unifrac.test3.feature-table.qza
test-data/weighted_unifrac.test3.phylogeny.qza
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diff -r 0eea854dbf4d -r c75e3e049c2f qiime2__diversity_lib__observed_features.xml
--- a/qiime2__diversity_lib__observed_features.xml Mon Aug 29 19:42:40 2022 +0000
+++ b/qiime2__diversity_lib__observed_features.xml Fri Jan 13 22:45:51 2023 +0000
[
@@ -1,31 +1,31 @@
 <?xml version='1.0' encoding='utf-8'?>
 <!--
-Copyright (c) 2022, QIIME 2 development team.
+Copyright (c) 2023, QIIME 2 development team.
 
 Distributed under the terms of the Modified BSD License. (SPDX: BSD-3-Clause)
 -->
 <!--
 This tool was automatically generated by:
-    q2galaxy (version: 2022.8.1)
+    q2galaxy (version: 2022.11.1)
 for:
-    qiime2 (version: 2022.8.1)
+    qiime2 (version: 2022.11.1)
 -->
-<tool name="qiime2 diversity-lib observed-features" id="qiime2__diversity_lib__observed_features" version="2022.8.0+q2galaxy.2022.8.1.2" profile="22.05" license="BSD-3-Clause">
+<tool name="qiime2 diversity-lib observed-features" id="qiime2__diversity_lib__observed_features" version="2022.11.1+q2galaxy.2022.11.1.2" profile="22.05" license="BSD-3-Clause">
     <description>Observed Features</description>
     <requirements>
-        <container type="docker">quay.io/qiime2/core:2022.8</container>
+        <container type="docker">quay.io/qiime2/core:2022.11</container>
     </requirements>
     <version_command>q2galaxy version diversity_lib</version_command>
-    <command detect_errors="aggressive">q2galaxy run diversity_lib observed_features '$inputs'</command>
+    <command detect_errors="exit_code">q2galaxy run diversity_lib observed_features '$inputs'</command>
     <configfiles>
         <inputs name="inputs" data_style="paths"/>
     </configfiles>
     <inputs>
         <param name="table" type="data" format="qza" label="table: FeatureTable[Frequency | RelativeFrequency | PresenceAbsence]" help="[required]  The feature table containing the samples for which the number of observed features should be calculated. Table values will be converted to presence/absence.">
             <options options_filter_attribute="metadata.semantic_type">
-                <filter type="add_value" value="FeatureTable[Frequency]"/>
                 <filter type="add_value" value="FeatureTable[PresenceAbsence]"/>
                 <filter type="add_value" value="FeatureTable[RelativeFrequency]"/>
+                <filter type="add_value" value="FeatureTable[Frequency]"/>
             </options>
             <validator type="expression" message="Incompatible type">hasattr(value.metadata, "semantic_type") and value.metadata.semantic_type in ['FeatureTable[Frequency]', 'FeatureTable[PresenceAbsence]', 'FeatureTable[RelativeFrequency]']</validator>
         </param>
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