| Previous changeset 11:4b38580a8b97 (2012-02-16) Next changeset 13:cd6c4bd14718 (2012-02-24) |
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Commit message:
Uploaded |
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removed:
codonlogo.zip test.eps |
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| diff -r 4b38580a8b97 -r b819394a2634 codonlogo.zip |
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| Binary file codonlogo.zip has changed |
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| diff -r 4b38580a8b97 -r b819394a2634 test.eps --- a/test.eps Thu Feb 16 21:15:10 2012 -0500 +++ /dev/null Thu Jan 01 00:00:00 1970 +0000 |
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| b"@@ -1,1247 +0,0 @@\n-%!PS-Adobe-3.0 EPSF-3.0\n-%%Title: Sequence Logo: \n-%%Creator: ('CodonLogo 1.1 (2011-09-17)',)\n-%%CreationDate: 2012-01-30 20:49:03.377996\n-%%BoundingBox: 0 0 270 126 \n-%%Pages: 0\n-%%DocumentFonts: \n-%%EndComments\n-\n-\n-% ---- VARIABLES ----\n-\n-/True true def\n-/False false def\n-\n-/debug False def\n-\n-/logo_height 126 def\n-/logo_width 270 def\n-/logo_title () def\n-/show_title False def\n-\n-/logo_margin 2 def\n-/xaxis_label_height 6.0 def\n-/title_height 0 def\n-/stroke_width 0.5 def\n-/tic_length 5 def\n-\n-/lines_per_logo 1 def\n-/line_width 266.8 def\n-/line_height 116.0 def\n-/line_margin_left 30.0 def\n-/line_margin_right 10 def\n-/line_margin_bottom 12.0 def\n-/line_margin_top 4 def\n-\n-/stack_width 32.4 def\n-/stack_height 100 def\n-/stacks_per_line 7 def\n-/stack_margin 0.5 def\n-\n-/show_yaxis True def \n-/show_yaxis_label True def\n-/yaxis_label (bits) def\n-/yaxis_scale 6.0 def % height in units \n-/yaxis_tic_interval 1.0 def % in units\n-/yaxis_minor_tic_interval 0.2 def % in units\n-\n-/show_xaxis_label False def % True or False\n-/show_xaxis True def % True or False\n-/xaxis_label () def\n-/xaxis_tic_interval 1 def\n-/rotate_numbers False def % True or False\n-/number_interval 5 def\n-/show_ends False def \n-/end_type (-) def % d: DNA, p: PROTEIN, -: none\n-\n-/show_fineprint True def\n-/fineprint (CodonLogo 1.1) def\n-/logo_label () def\n-\n-/show_boxes False def % True or False\n-/shrink false def % True or False\n-/shrink_fraction 0.5 def \n-\n-/show_errorbars True def % True or False\n-/errorbar_fraction 0.9 def\n-/errorbar_width_fraction 0.25 def\n-/errorbar_gray 0.5 def\n-\n-/fontsize 10 def\n-/small_fontsize 6 def\n-/title_fontsize 12 def\n-/number_fontsize 8 def\n-\n-\n-/UseCIEColor true def % Fix for issue 4\n-/default_color [ 0.0 0.0 0.0 ] def \n-/color_dict << \n- (CAT) [ 0.0 1.0 1.0 ]\n- (CAU) [ 0.0 1.0 1.0 ]\n- (CAC) [ 0.0 1.0 1.0 ]\n- (AAA) [ 0.0 1.0 1.0 ]\n- (AAG) [ 0.0 1.0 1.0 ]\n- (CGT) [ 0.0 1.0 1.0 ]\n- (CGU) [ 0.0 1.0 1.0 ]\n- (CGC) [ 0.0 1.0 1.0 ]\n- (CGA) [ 0.0 1.0 1.0 ]\n- (CGG) [ 0.0 1.0 1.0 ]\n- (AGA) [ 0.0 1.0 1.0 ]\n- (AGG) [ 0.0 1.0 1.0 ]\n- (GAT) [ 1.0 0.0 0.0 ]\n- (GAU) [ 1.0 0.0 0.0 ]\n- (GAC) [ 1.0 0.0 0.0 ]\n- (GAA) [ 1.0 0.0 0.0 ]\n- (GAG) [ 1.0 0.0 0.0 ]\n- (TCT) [ 0.0 1.0 0.0 ]\n- (UCU) [ 0.0 1.0 0.0 ]\n- (TCC) [ 0.0 1.0 0.0 ]\n- (UCC) [ 0.0 1.0 0.0 ]\n- (TCA) [ 0.0 1.0 0.0 ]\n- (UCA) [ 0.0 1.0 0.0 ]\n- (TCG) [ 0.0 1.0 0.0 ]\n- (UCG) [ 0.0 1.0 0.0 ]\n- (AGT) [ 0.0 1.0 0.0 ]\n- (AGU) [ 0.0 1.0 0.0 ]\n- (AGC) [ 0.0 1.0 0.0 ]\n- (ACT) [ 0.0 1.0 0.0 ]\n- (ACU) [ 0.0 1.0 0.0 ]\n- (ACC) [ 0.0 1.0 0.0 ]\n- (ACA) [ 0.0 1.0 0.0 ]\n- (ACG) [ 0.0 1.0 0.0 ]\n- (CAA) [ 0.0 1.0 0.0 ]\n- (CAG) [ 0.0 1.0 0.0 ]\n- (AAT) [ 0.0 1.0 0.0 ]\n- (AAU) [ 0.0 1.0 0.0 ]\n- (AAC) [ 0.0 1.0 0.0 ]\n- (GCT) [ 0.333333333333 0.333333333333 1.0 ]\n- (GCU) [ 0.333333333333 0.333333333333 1.0 ]\n- (GCC) [ 0.333333333333 0.333333333333 1.0 ]\n- (GCA) [ 0.333333333333 0.333333333333 1.0 ]\n- (GCG) [ 0.333333333333 0.333333333333 1.0 ]\n- (GTT) [ 0.333333333333 0.333333333333 1.0 ]\n- (GUU) [ 0.333333333333 0.333333333333 1.0 ]\n- (GTC) [ 0.333333333333 0.333333333333 1.0 ]\n- (GUC) [ 0.333333333333 0.333333333333 1.0 ]\n- (GTA) [ 0.333333333333 0.333333333333 1.0 ]\n- (GUA) [ 0.333333333333 0.333333333333 1.0 ]\n- (GTG) [ 0.333333333333 0.333333333333 1.0 ]\n- (GUG) [ 0.333333333333 0.333333333333 1.0 ]\n- (CTT) [ 0.333333333333 0.333333333333 1.0 ]\n- (CUU) [ 0.333333333333 0.333333333333 1.0 ]\n- (CTC) [ 0.333333333333 0.333333333333 1.0 ]\n- ("..b' ShowSymbol\n- 1.000000 0.000000 (GCA) ShowSymbol\n- 1.000000 0.000000 (GAT) ShowSymbol\n- 1.000000 0.000000 (GAG) ShowSymbol\n- 1.000000 0.000000 (GAC) ShowSymbol\n- 1.000000 0.000000 (GAA) ShowSymbol\n- 1.000000 0.000000 (CTT) ShowSymbol\n- 1.000000 0.000000 (CTG) ShowSymbol\n- 1.000000 0.000000 (CGG) ShowSymbol\n- 1.000000 0.000000 (CCT) ShowSymbol\n- 1.000000 0.000000 (CCG) ShowSymbol\n- 1.000000 0.000000 (CCC) ShowSymbol\n- 1.000000 0.000000 (CCA) ShowSymbol\n- 1.000000 0.000000 (CAG) ShowSymbol\n- 1.000000 0.000000 (ATG) ShowSymbol\n- 1.000000 0.000000 (ATC) ShowSymbol\n- 1.000000 0.000000 (ATA) ShowSymbol\n- 1.000000 0.000000 (AGT) ShowSymbol\n- 1.000000 0.000000 (AGG) ShowSymbol\n- 1.000000 0.000000 (AGC) ShowSymbol\n- 1.000000 0.000000 (AGA) ShowSymbol\n- 1.000000 0.000000 (ACT) ShowSymbol\n- 1.000000 0.000000 (ACG) ShowSymbol\n- 1.000000 0.000000 (ACC) ShowSymbol\n- 1.000000 0.000000 (AAT) ShowSymbol\n- 1.000000 0.000000 (AAG) ShowSymbol\n- 1.000000 0.021747 (TGC) ShowSymbol\n- 1.000000 0.021747 (TAC) ShowSymbol\n- 1.000000 0.021747 (TAA) ShowSymbol\n- 1.000000 0.021747 (CTC) ShowSymbol\n- 1.000000 0.021747 (CTA) ShowSymbol\n- 1.000000 0.021747 (ATT) ShowSymbol\n- 1.000000 0.021747 (ACA) ShowSymbol\n- 1.000000 0.021747 (AAA) ShowSymbol\n- 1.000000 0.043493 (CGA) ShowSymbol\n- 1.000000 0.065240 (CGT) ShowSymbol\n- 1.000000 0.065240 (CAT) ShowSymbol\n- 1.000000 0.086986 (CGC) ShowSymbol\n- 1.000000 0.086986 (CAA) ShowSymbol\n- 1.000000 0.086986 (AAC) ShowSymbol\n- 1.000000 0.456677 (CAC) ShowSymbol\n- 0.320681 0.320681 DrawErrorbar\n-EndStack\n-\n-(7) StartStack\n- 1.000000 0.000000 (TTG) ShowSymbol\n- 1.000000 0.000000 (TTA) ShowSymbol\n- 1.000000 0.000000 (TGG) ShowSymbol\n- 1.000000 0.000000 (TGC) ShowSymbol\n- 1.000000 0.000000 (TGA) ShowSymbol\n- 1.000000 0.000000 (TCG) ShowSymbol\n- 1.000000 0.000000 (TCC) ShowSymbol\n- 1.000000 0.000000 (TAT) ShowSymbol\n- 1.000000 0.000000 (TAG) ShowSymbol\n- 1.000000 0.000000 (TAC) ShowSymbol\n- 1.000000 0.000000 (TAA) ShowSymbol\n- 1.000000 0.000000 (GTG) ShowSymbol\n- 1.000000 0.000000 (GTC) ShowSymbol\n- 1.000000 0.000000 (GTA) ShowSymbol\n- 1.000000 0.000000 (GGT) ShowSymbol\n- 1.000000 0.000000 (GGG) ShowSymbol\n- 1.000000 0.000000 (GGC) ShowSymbol\n- 1.000000 0.000000 (GCG) ShowSymbol\n- 1.000000 0.000000 (GCC) ShowSymbol\n- 1.000000 0.000000 (GCA) ShowSymbol\n- 1.000000 0.000000 (GAT) ShowSymbol\n- 1.000000 0.000000 (GAG) ShowSymbol\n- 1.000000 0.000000 (GAC) ShowSymbol\n- 1.000000 0.000000 (CTT) ShowSymbol\n- 1.000000 0.000000 (CTG) ShowSymbol\n- 1.000000 0.000000 (CTC) ShowSymbol\n- 1.000000 0.000000 (CTA) ShowSymbol\n- 1.000000 0.000000 (CGT) ShowSymbol\n- 1.000000 0.000000 (CGG) ShowSymbol\n- 1.000000 0.000000 (CGC) ShowSymbol\n- 1.000000 0.000000 (CGA) ShowSymbol\n- 1.000000 0.000000 (CCT) ShowSymbol\n- 1.000000 0.000000 (CCG) ShowSymbol\n- 1.000000 0.000000 (CCC) ShowSymbol\n- 1.000000 0.000000 (CCA) ShowSymbol\n- 1.000000 0.000000 (CAG) ShowSymbol\n- 1.000000 0.000000 (CAC) ShowSymbol\n- 1.000000 0.000000 (ATG) ShowSymbol\n- 1.000000 0.000000 (ATC) ShowSymbol\n- 1.000000 0.000000 (AGG) ShowSymbol\n- 1.000000 0.000000 (AGC) ShowSymbol\n- 1.000000 0.000000 (ACG) ShowSymbol\n- 1.000000 0.000000 (ACC) ShowSymbol\n- 1.000000 0.000000 (AAG) ShowSymbol\n- 1.000000 0.000000 (AAC) ShowSymbol\n- 1.000000 0.017469 (TTC) ShowSymbol\n- 1.000000 0.017469 (TGT) ShowSymbol\n- 1.000000 0.017469 (TCT) ShowSymbol\n- 1.000000 0.017469 (TCA) ShowSymbol\n- 1.000000 0.017469 (GGA) ShowSymbol\n- 1.000000 0.017469 (GCT) ShowSymbol\n- 1.000000 0.017469 (GAA) ShowSymbol\n- 1.000000 0.017469 (ACA) ShowSymbol\n- 1.000000 0.034937 (TTT) ShowSymbol\n- 1.000000 0.034937 (CAT) ShowSymbol\n- 1.000000 0.034937 (CAA) ShowSymbol\n- 1.000000 0.034937 (AGT) ShowSymbol\n- 1.000000 0.052406 (GTT) ShowSymbol\n- 1.000000 0.052406 (AGA) ShowSymbol\n- 1.000000 0.052406 (AAT) ShowSymbol\n- 1.000000 0.069875 (AAA) ShowSymbol\n- 1.000000 0.087344 (ATA) ShowSymbol\n- 1.000000 0.087344 (ACT) ShowSymbol\n- 1.000000 0.174687 (ATT) ShowSymbol\n- 0.295737 0.295737 DrawErrorbar\n-EndStack\n-\n-EndLine\n-\n-EndLogo\n-\n-\n-%%EOF\n-\n' |