| Previous changeset 0:d13e26f576bc (2019-02-09) Next changeset 2:e6987afa0484 (2023-11-13) |
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Commit message:
planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/anisotropic-diffusion/ commit b2acc1845a25828181597fe5b6982fe116a7796d |
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modified:
anisotropic_diffusion.py anisotropic_diffusion.xml |
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| diff -r d13e26f576bc -r 17d3cfba9b5a anisotropic_diffusion.py --- a/anisotropic_diffusion.py Sat Feb 09 14:30:00 2019 -0500 +++ b/anisotropic_diffusion.py Mon Jul 22 05:01:04 2019 -0400 |
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| @@ -14,7 +14,7 @@ parser.add_argument('gamma', type=float, help='Speed of diffusion', default=0.1) parser.add_argument('eqoption', type=int, choices=[1,2], help='Perona Malik diffusion equation', default=1) args = parser.parse_args() - + with warnings.catch_warnings(): warnings.simplefilter("ignore") #to ignore FutureWarning as well |
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| diff -r d13e26f576bc -r 17d3cfba9b5a anisotropic_diffusion.xml --- a/anisotropic_diffusion.xml Sat Feb 09 14:30:00 2019 -0500 +++ b/anisotropic_diffusion.xml Mon Jul 22 05:01:04 2019 -0400 |
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| @@ -1,11 +1,12 @@ -<tool id="ip_anisotropic_diffusion" name="Anisotropic Diffusion" version="0.1"> +<tool id="ip_anisotropic_diffusion" name="Anisotropic Diffusion" version="0.2"> <description>Edge-preserving, Anisotropic diffusion</description> <requirements> <requirement type="package" version="0.14.2">scikit-image</requirement> <requirement type="package" version="0.3.0">medpy</requirement> <requirement type="package" version="1.15.4">numpy</requirement> - </requirements> - <command> + <requirement type="package" version="0.15.1">tifffile</requirement> + </requirements> + <command detect_errors="aggressive"> <![CDATA[ python '$__tool_directory__/anisotropic_diffusion.py' '$input' '$output' '$niter' '$kappa' '$gamma' '$eqoption' ]]> |