|
Commit message:
planemo upload for repository https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/ commit 9bf9a6e46a330890be932f60d1d996dd166426c4 |
|
added:
scater-calculate-qc-metrics.xml scater_macros.xml test-data/R_scater_cpm.rds test-data/R_scater_normalize.rds test-data/R_scater_qc.rds test-data/R_scater_serialized.rds test-data/barcodes.tsv test-data/extracted_metrics_file.txt test-data/genes.tsv test-data/matrix.mtx test-data/outliers_file.txt |
| b |
| diff -r 000000000000 -r 2fd982fab98a scater-calculate-qc-metrics.xml --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/scater-calculate-qc-metrics.xml Wed Apr 03 11:46:02 2019 -0400 |
| [ |
| @@ -0,0 +1,62 @@ +<tool id="scater_calculate_qc_metrics" name="Scater CalculateQcMetrics" version="@TOOL_VERSION@+galaxy0"> + <description>based on expression values and experiment information</description> + <macros> + <import>scater_macros.xml</import> + </macros> + <expand macro="requirements" /> + <command detect_errors="exit_code"><![CDATA[ +scater-calculate-qc-metrics.R -i '$R_scater_serialized' +#if $exprs_values: + -e '$exprs_values' +#end if +## #if $feature_controls: +## -f '$feature_controls' +## #end if +#if $cell_controls: + -c '$cell_controls' +#end if +#if $pct_top: + -p '$pct_top' +#end if +#if $detection_limit: + -d '$detection_limit' +#end if + -s $use_spikes + -o '$R_scater_qc' + ]]></command> + + <inputs> + <param name="R_scater_serialized" type="data" format="rdata" label="SingleCellExperiment object" + help="singleCellExperiment object containing expression values and experimental information. Must have been appropriately prepared."/> + <param name="exprs_values" type="text" argument="--exprs-values" optional="true" value='counts' label="name of the variable that defines expression values in RDS object" + help="character, indicating slot of the assays of the object that should be used to define expression. Valid options are counts as default. tpm, fpkm and logcounts, or anything else in the object added manually by the user."/> + <!-- <param name="feature_controls" type="text" argument="-\-feature-controls" optional="true" label="feature controls" --> + <!-- help="file containing a list of the control files with one file per line. Each control file should have one feature (e.g. gene) per line. A named list is created (names derived from control file names) containing one or more vectors to identify feature controls (for example, ERCC spike-in genes, mitochondrial genes, etc)"/> --> + <param name="cell_controls" type="data" format="tabula" argument="--cell-controls" optional="true" label="cell controls" + help="file (one cell per line) to be used to derive a vector of cell (sample) names used to identify cell controls (for example, blank wells or bulk controls)."/> + <param name="pct_top" type="text" argument="--percent-top" value="50,100,200,500" optional="true" + label="Number of top genes" help="Each element is treated as a number of top genes to compute the percentage of library size occupied by the most highly expressed genes in each cell."/> + <param name="detection_limit" type="float" argument="--detection-limit" value="0" optional="true" + label="lower detection limit for expression" help="A numeric scalar to be passed to 'nexprs', specifying the lower detection limit for expression."/> + <param name="use_spikes" type="boolean" argument="--use-spikes" checked="true" optional="true" + label="Set spike-in as control features?" help="A logical scalar indicating whether existing spike-in sets in 'object' should be automatically added to 'feature_controls'"/> + </inputs> + + <outputs> + <data name="R_scater_qc" format="rdata" label="${tool.name} on ${on_string}: serialized SingleCellExperiment object containing calculated QC metrics"/> + </outputs> + + <tests> + <test> + <param name="R_scater_serialized" value="R_scater_serialized.rds"/> + <output name="R_scater_qc" file="R_scater_qc.rds"/> + </test> + </tests> + + <help><![CDATA[ + @HELP@ + + @VERSION_HISTORY@ + ]]></help> + <expand macro="citations" /> +</tool> |
| b |
| diff -r 000000000000 -r 2fd982fab98a scater_macros.xml --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/scater_macros.xml Wed Apr 03 11:46:02 2019 -0400 |
| [ |
| @@ -0,0 +1,50 @@ +<macros> + <token name="@TOOL_VERSION@">1.8.4</token> + <token name="@HELP@">More information can be found at https://bioconductor.org/packages/release/bioc/html/scater.html</token> + <xml name="requirements"> + <requirements> + <requirement type="package" version="0.0.4">bioconductor-scater-scripts</requirement> + <yield/> + </requirements> + </xml> + <xml name="version"> + <version_command><![CDATA[ + echo $(R --version | grep version | grep -v GNU)", scater version" $(R --vanilla --slave -e "library(scater); cat(sessionInfo()\$otherPkgs\$scater\$Version)" 2> /dev/null | grep -v -i "WARNING: ") + ]]></version_command> + </xml> + <token name="@VERSION_HISTORY@"><![CDATA[ +**Version history** + +1.8.4+galaxy0: Initial contribution. Suhaib Mohammed, Ni Huang and Pablo Moreno, Expression Atlas team https://www.ebi.ac.uk/gxa/home at +EMBL-EBI https://www.ebi.ac.uk/ and and Teichmann Lab at Wellcome Sanger Institute. + ]]></token> + <xml name="citations"> + <citations> + <citation type="bibtex"> + @article{doi:10.1093/bioinformatics/btw777, + author = {McCarthy, Davis J and Campbell, Kieran R and Lun, Aaron T L and Wills, Quin F}, + title = {Scater: pre-processing, quality control, normalization and visualization of single-cell RNA-seq data in R}, + journal = {Bioinformatics}, + volume = {33}, + number = {8}, + pages = {1179-1186}, + year = {2017}, + doi = {10.1093/bioinformatics/btw777}, + URL = {http://dx.doi.org/10.1093/bioinformatics/btw777}, + eprint = {/oup/backfile/content_public/journal/bioinformatics/33/8/10.1093_bioinformatics_btw777/2/btw777.pdf} + } + </citation> + <citation type="bibtex"> + @misc{githubbioconductor-scater-scripts.git, + author = {Jonathan Manning, Ni Huang, Suhaib Mohammed, EBI Gene Expression Team}, + year = {2018}, + title = {Scater-scripts: command line interface for Scater}, + publisher = {GitHub}, + journal = {GitHub repository}, + url = {https://github.com/ebi-gene-expression-group/bioconductor-scater-scripts.git}, + } + </citation> + <yield /> + </citations> + </xml> +</macros> |
| b |
| diff -r 000000000000 -r 2fd982fab98a test-data/R_scater_cpm.rds |
| b |
| Binary file test-data/R_scater_cpm.rds has changed |
| b |
| diff -r 000000000000 -r 2fd982fab98a test-data/R_scater_normalize.rds |
| b |
| Binary file test-data/R_scater_normalize.rds has changed |
| b |
| diff -r 000000000000 -r 2fd982fab98a test-data/R_scater_qc.rds |
| b |
| Binary file test-data/R_scater_qc.rds has changed |
| b |
| diff -r 000000000000 -r 2fd982fab98a test-data/R_scater_serialized.rds |
| b |
| Binary file test-data/R_scater_serialized.rds has changed |
| b |
| diff -r 000000000000 -r 2fd982fab98a test-data/barcodes.tsv --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/barcodes.tsv Wed Apr 03 11:46:02 2019 -0400 |
| b |
| b'@@ -0,0 +1,2700 @@\n+AAACATACAACCAC-1\n+AAACATTGAGCTAC-1\n+AAACATTGATCAGC-1\n+AAACCGTGCTTCCG-1\n+AAACCGTGTATGCG-1\n+AAACGCACTGGTAC-1\n+AAACGCTGACCAGT-1\n+AAACGCTGGTTCTT-1\n+AAACGCTGTAGCCA-1\n+AAACGCTGTTTCTG-1\n+AAACTTGAAAAACG-1\n+AAACTTGATCCAGA-1\n+AAAGAGACGAGATA-1\n+AAAGAGACGCGAGA-1\n+AAAGAGACGGACTT-1\n+AAAGAGACGGCATT-1\n+AAAGATCTGGGCAA-1\n+AAAGCAGAAGCCAT-1\n+AAAGCAGATATCGG-1\n+AAAGCCTGTATGCG-1\n+AAAGGCCTGTCTAG-1\n+AAAGTTTGATCACG-1\n+AAAGTTTGGGGTGA-1\n+AAAGTTTGTAGAGA-1\n+AAAGTTTGTAGCGT-1\n+AAATCAACAATGCC-1\n+AAATCAACACCAGT-1\n+AAATCAACCAGGAG-1\n+AAATCAACCCTATT-1\n+AAATCAACGGAAGC-1\n+AAATCAACTCGCAA-1\n+AAATCATGACCACA-1\n+AAATCCCTCCACAA-1\n+AAATCCCTGCTATG-1\n+AAATGTTGAACGAA-1\n+AAATGTTGCCACAA-1\n+AAATGTTGTGGCAT-1\n+AAATTCGAAGGTTC-1\n+AAATTCGAATCACG-1\n+AAATTCGAGCTGAT-1\n+AAATTCGAGGAGTG-1\n+AAATTCGATTCTCA-1\n+AAATTGACACGACT-1\n+AAATTGACTCGCTC-1\n+AACAAACTCATTTC-1\n+AACAAACTTTCGTT-1\n+AACAATACGACGAG-1\n+AACACGTGCAGAGG-1\n+AACACGTGGAAAGT-1\n+AACACGTGGAACCT-1\n+AACACGTGGCTACA-1\n+AACACGTGTACGAC-1\n+AACAGCACAAGAGT-1\n+AACATTGATGGGAG-1\n+AACCAGTGATACCG-1\n+AACCCAGATCGCTC-1\n+AACCGATGCTCCCA-1\n+AACCGATGGTCATG-1\n+AACCGATGTTCTAC-1\n+AACCGCCTAGCGTT-1\n+AACCGCCTCTACGA-1\n+AACCTACTGTGAGG-1\n+AACCTACTGTGTTG-1\n+AACCTTACGAGACG-1\n+AACCTTACGCGAGA-1\n+AACCTTACTAACGC-1\n+AACCTTTGGACGGA-1\n+AACCTTTGTACGCA-1\n+AACGCAACAAGTAG-1\n+AACGCATGACCCAA-1\n+AACGCATGCCTTCG-1\n+AACGCATGTACTTC-1\n+AACGCCCTCGGGAA-1\n+AACGCCCTCGTACA-1\n+AACGCCCTGCTTAG-1\n+AACGCCCTGGCATT-1\n+AACGTCGAGTATCG-1\n+AACGTGTGAAAGCA-1\n+AACGTGTGGCGGAA-1\n+AACGTGTGTCCAAG-1\n+AACGTGTGTGCTTT-1\n+AACTACCTTAGAGA-1\n+AACTCACTCAAGCT-1\n+AACTCACTTGGAGG-1\n+AACTCGGAAAGTGA-1\n+AACTCGGAAGGTCT-1\n+AACTCTTGCAGGAG-1\n+AACTGTCTCCCTTG-1\n+AACTTGCTACGCTA-1\n+AACTTGCTGGGACA-1\n+AAGAACGAGTGTTG-1\n+AAGAAGACGTAGGG-1\n+AAGACAGAAGTCTG-1\n+AAGACAGAGGATCT-1\n+AAGACAGATTACCT-1\n+AAGAGATGGGTAGG-1\n+AAGATGGAAAACAG-1\n+AAGATGGAGAACTC-1\n+AAGATGGAGATAAG-1\n+AAGATTACAACCTG-1\n+AAGATTACAGATCC-1\n+AAGATTACCCGTTC-1\n+AAGATTACCGCCTT-1\n+AAGATTACCTCAAG-1\n+AAGATTACTCCTCG-1\n+AAGCAAGAGCGAGA-1\n+AAGCAAGAGCTTAG-1\n+AAGCAAGAGGTGTT-1\n+AAGCACTGAGCAAA-1\n+AAGCACTGCATACG-1\n+AAGCACTGGTTCTT-1\n+AAGCCAACGTGTTG-1\n+AAGCCATGAACTGC-1\n+AAGCCATGACACGT-1\n+AAGCCATGCGTGAT-1\n+AAGCCATGTCTCGC-1\n+AAGCCTGACATGCA-1\n+AAGCCTGACCGAAT-1\n+AAGCGACTCCTCAC-1\n+AAGCGACTGTGTCA-1\n+AAGCGACTTACAGC-1\n+AAGCGACTTTGACG-1\n+AAGCGTACGTCTTT-1\n+AAGGCTTGCGAACT-1\n+AAGGTCACGGTTAC-1\n+AAGGTCACTGTTTC-1\n+AAGGTCACTTCCCG-1\n+AAGGTCTGACAGTC-1\n+AAGGTCTGCAGATC-1\n+AAGGTCTGGTATGC-1\n+AAGTAACTCTGAAC-1\n+AAGTAACTGAGATA-1\n+AAGTAGGATACAGC-1\n+AAGTATACCGAACT-1\n+AAGTCCGACTTGTT-1\n+AAGTCCGATAGAAG-1\n+AAGTCTCTAGTCGT-1\n+AAGTCTCTCGGAGA-1\n+AAGTGGCTTGGAGG-1\n+AAGTTCCTCATTCT-1\n+AAGTTCCTTCTTAC-1\n+AATAAGCTCGAATC-1\n+AATAAGCTCGTTGA-1\n+AATACCCTGGACGA-1\n+AATACCCTGGCATT-1\n+AATACTGAAAGGGC-1\n+AATACTGAATTGGC-1\n+AATAGGGAACCCTC-1\n+AATAGGGAGAATGA-1\n+AATCAAACTATCGG-1\n+AATCCGGAATGCTG-1\n+AATCCTACCGGTAT-1\n+AATCCTTGACGGGA-1\n+AATCCTTGGTGAGG-1\n+AATCGGTGGAACTC-1\n+AATCGGTGTGCTTT-1\n+AATCTAGAAAAGTG-1\n+AATCTAGAATCGGT-1\n+AATCTCACAGCCTA-1\n+AATCTCACTCTAGG-1\n+AATCTCTGAACAGA-1\n+AATCTCTGCTTTAC-1\n+AATGATACACCAAC-1\n+AATGATACGGTCAT-1\n+AATGCGTGACACCA-1\n+AATGCGTGGACGGA-1\n+AATGCGTGGCTATG-1\n+AATGGAGAATCGTG-1\n+AATGGAGATCCTTA-1\n+AATGGCTGACACCA-1\n+AATGGCTGCGTGAT-1\n+AATGGCTGTAAAGG-1\n+AATGGCTGTACTCT-1\n+AATGGCTGTGAAGA-1\n+AATGTAACGGTGGA-1\n+AATGTAACGTTTGG-1\n+AATGTCCTCTTCTA-1\n+AATGTTGACAGTCA-1\n+AATGTTGAGTTGAC-1\n+AATGTTGATCTACT-1\n+AATTACGAATTCCT-1\n+AATTACGACTTCTA-1\n+AATTACGAGTAGCT-1\n+AATTACGAGTGAGG-1\n+AATTACGATTGGCA-1\n+AATTCCTGCTCAGA-1\n+AATTGATGTCGCAA-1\n+AATTGTGACTTGGA-1\n+ACAAAGGAGGGTGA-1\n+ACAAATTGATTCTC-1\n+ACAAATTGCTCAGA-1\n+ACAAATTGTTGCGA-1\n+ACAACCGAGGGATG-1\n+ACAACCGAGTTACG-1\n+ACAAGAGAAGTCGT-1\n+ACAAGAGACTTATC-1\n+ACAAGAGAGTTGAC-1\n+ACAATCCTAACCGT-1\n+ACAATCCTTAGCGT-1\n+ACAATTGACTGACA-1\n+ACAATTGATGACTG-1\n+ACACAGACACCTGA-1\n+ACACAGACCATACG-1\n+ACACCAGAGGGCAA-1\n+ACACCCTGGTGTTG-1\n+ACACGAACAGTTCG-1\n+ACACGATGACGCAT-1\n+ACACGATGATGTGC-1\n+ACACGATGTCGTAG-1\n+ACACGATGTGGTCA-1\n+ACAGACACGGCATT-1\n+ACAGACACGTTGTG-1\n+ACAGCAACACCTAG-1\n+ACAGCAACCTCAAG-1\n+ACAGGTACCCCACT-1\n+ACAGGTACGCTGTA-1\n+ACAGGTACTGGTGT-1\n+ACAGTCGACCCAAA-1\n+ACAGTCGACCGATA-1\n+ACAGTGACTCACCC-1\n+ACAGTGACTCTATC-1\n+A'..b'-1\n+TGCTATACTGCTGA-1\n+TGCTGAGAGAGCAG-1\n+TGCTGAGATTATCC-1\n+TGGAAAGACTCTCG-1\n+TGGAAAGAGCGATT-1\n+TGGAAAGAGGTCAT-1\n+TGGAAAGATATGGC-1\n+TGGAACACAAACAG-1\n+TGGAACACGCTAAC-1\n+TGGAAGCTCAGATC-1\n+TGGACCCTACACTG-1\n+TGGACCCTCATGGT-1\n+TGGACCCTGGTACT-1\n+TGGACTGAGTATGC-1\n+TGGAGACTATCAGC-1\n+TGGAGACTGAAACA-1\n+TGGAGACTTCAAGC-1\n+TGGAGACTTGACCA-1\n+TGGAGGGACGGAGA-1\n+TGGAGGGAGCTATG-1\n+TGGATCGATAAAGG-1\n+TGGATGTGACCTAG-1\n+TGGATGTGATGTCG-1\n+TGGATGTGTGAAGA-1\n+TGGATTCTCATACG-1\n+TGGCAATGCTTGTT-1\n+TGGCAATGGAGGGT-1\n+TGGCACCTTCACGA-1\n+TGGCACCTTCAGTG-1\n+TGGGTATGAAGAGT-1\n+TGGGTATGCACAAC-1\n+TGGGTATGGTACGT-1\n+TGGGTATGTTTGGG-1\n+TGGTAGACATGCCA-1\n+TGGTAGACCCTCAC-1\n+TGGTAGACCTGATG-1\n+TGGTAGTGCACTGA-1\n+TGGTATCTAAACAG-1\n+TGGTATCTCTTCCG-1\n+TGGTCAGACCCAAA-1\n+TGGTCAGACCGTTC-1\n+TGGTTACTGACGTT-1\n+TGGTTACTGTTCTT-1\n+TGTAACCTAGAGGC-1\n+TGTAACCTTGCCTC-1\n+TGTAATGACACAAC-1\n+TGTAATGAGGTAAA-1\n+TGTACTTGCTCTAT-1\n+TGTAGGTGCGAGAG-1\n+TGTAGGTGCTATGG-1\n+TGTAGGTGCTCTAT-1\n+TGTAGGTGTGCTGA-1\n+TGTAGTCTTCCAGA-1\n+TGTAGTCTTGCACA-1\n+TGTATCTGTTAGGC-1\n+TGTATGCTCATGGT-1\n+TGTATGCTGTAGGG-1\n+TGTATGCTTTCATC-1\n+TGTCAGGAATACCG-1\n+TGTCAGGAGATGAA-1\n+TGTCTAACCCCTTG-1\n+TGTGACGATTCTCA-1\n+TGTGAGACTGTCAG-1\n+TGTGAGACTTGAGC-1\n+TGTGAGTGACCACA-1\n+TGTGAGTGAGTGCT-1\n+TGTGAGTGGAGATA-1\n+TGTGATCTCTCTAT-1\n+TGTGATCTGACACT-1\n+TGTGGATGGCCAAT-1\n+TGTTAAGACAAAGA-1\n+TGTTAAGATAAGGA-1\n+TGTTAAGATTGGCA-1\n+TGTTACACCGCATA-1\n+TGTTACACGACTAC-1\n+TGTTACTGGCTACA-1\n+TGTTACTGTAGTCG-1\n+TTAACCACCGTAAC-1\n+TTAACCACTAAGGA-1\n+TTAACCACTCAGAC-1\n+TTACACACGTGTTG-1\n+TTACACACTCCTAT-1\n+TTACCATGAATCGC-1\n+TTACCATGGTTGAC-1\n+TTACCATGTGTCTT-1\n+TTACCATGTTGTGG-1\n+TTACGACTGAGAGC-1\n+TTACGACTTGACAC-1\n+TTACGTACGTTCAG-1\n+TTACTCGAACGTTG-1\n+TTACTCGAAGAATG-1\n+TTACTCGACGCAAT-1\n+TTACTCGAGGGTGA-1\n+TTACTCGATCTACT-1\n+TTAGAATGTGGTGT-1\n+TTAGAATGTGTAGC-1\n+TTAGACCTCCTACC-1\n+TTAGACCTCCTTTA-1\n+TTAGCTACAACCGT-1\n+TTAGCTACTGTCCC-1\n+TTAGCTACTTTCGT-1\n+TTAGGGACGCGAAG-1\n+TTAGGGTGCTGGAT-1\n+TTAGGGTGTCCTGC-1\n+TTAGGTCTACTTTC-1\n+TTAGTCACCAGTTG-1\n+TTAGTCTGAAAGCA-1\n+TTAGTCTGCCAACA-1\n+TTAGTCTGTGCACA-1\n+TTATCCGACTAGTG-1\n+TTATCCGAGAAAGT-1\n+TTATGAGAGATAAG-1\n+TTATGCACGTCACA-1\n+TTATGGCTTATGGC-1\n+TTATTCCTATGCTG-1\n+TTATTCCTGGACAG-1\n+TTATTCCTGGTACT-1\n+TTATTCCTTCGTGA-1\n+TTCAAAGATAAAGG-1\n+TTCAACACAACAGA-1\n+TTCAACACCCCAAA-1\n+TTCAACACGGACGA-1\n+TTCAAGCTAAGAAC-1\n+TTCAAGCTAGATGA-1\n+TTCAAGCTGTTGAC-1\n+TTCAAGCTTCCAAG-1\n+TTCAAGCTTGATGC-1\n+TTCAAGCTTTCGCC-1\n+TTCACAACCCGTTC-1\n+TTCACAACGTCTGA-1\n+TTCAGACTACCCAA-1\n+TTCAGACTCTCGAA-1\n+TTCAGTACCGACTA-1\n+TTCAGTACTCAAGC-1\n+TTCAGTACTCCTAT-1\n+TTCAGTTGCCAAGT-1\n+TTCAGTTGTCCTTA-1\n+TTCAGTTGTCTAGG-1\n+TTCAGTTGTCTCGC-1\n+TTCATCGAGGTGGA-1\n+TTCATGTGTGGTGT-1\n+TTCATTCTATGTCG-1\n+TTCATTCTTCTCTA-1\n+TTCCAAACCTATGG-1\n+TTCCAAACCTCCCA-1\n+TTCCAAACTCCCAC-1\n+TTCCAAACTTGACG-1\n+TTCCATGACGAGAG-1\n+TTCCATGACTGTCC-1\n+TTCCCACTTGAGGG-1\n+TTCCCACTTGTCTT-1\n+TTCCTAGAAAGTGA-1\n+TTCCTAGACTAGTG-1\n+TTCGAGGACTCTAT-1\n+TTCGAGGAGGGCAA-1\n+TTCGAGGATAGAAG-1\n+TTCGATTGAGCATC-1\n+TTCGGAGAATGCCA-1\n+TTCGGAGATGTGCA-1\n+TTCGTATGAAAAGC-1\n+TTCGTATGGATAGA-1\n+TTCGTATGGTCTGA-1\n+TTCGTATGTCCTTA-1\n+TTCTACGAACGTAC-1\n+TTCTACGAGTTGGT-1\n+TTCTAGTGACACGT-1\n+TTCTAGTGCATGAC-1\n+TTCTAGTGGAGAGC-1\n+TTCTAGTGGTCACA-1\n+TTCTCAGAAGAGAT-1\n+TTCTCAGAAGCATC-1\n+TTCTCAGATGGAGG-1\n+TTCTGATGGAGACG-1\n+TTCTTACTCTGGAT-1\n+TTGAACCTCCTTGC-1\n+TTGAATGAACTACG-1\n+TTGAATGACTTACT-1\n+TTGAATGATCTCAT-1\n+TTGACACTCTGTAG-1\n+TTGACACTGATAAG-1\n+TTGAGGACAGAACA-1\n+TTGAGGACTACGCA-1\n+TTGAGGTGGACGGA-1\n+TTGCATTGAGCTAC-1\n+TTGCATTGCTAAGC-1\n+TTGCATTGTGACTG-1\n+TTGCTAACACCAAC-1\n+TTGCTAACACGCTA-1\n+TTGCTAACCACTCC-1\n+TTGCTATGGTACGT-1\n+TTGCTATGGTAGGG-1\n+TTGGAGACCAATCG-1\n+TTGGAGACGCTATG-1\n+TTGGAGACTATGGC-1\n+TTGGGAACTGAACC-1\n+TTGGTACTACTGGT-1\n+TTGGTACTCTTAGG-1\n+TTGGTACTGAATCC-1\n+TTGGTACTGGATTC-1\n+TTGTACACGTTGTG-1\n+TTGTACACTTGCAG-1\n+TTGTAGCTAGCTCA-1\n+TTGTAGCTCTCTTA-1\n+TTGTCATGGACGGA-1\n+TTTAGAGATCCTCG-1\n+TTTAGCTGATACCG-1\n+TTTAGCTGGATACC-1\n+TTTAGCTGTACTCT-1\n+TTTAGGCTCCTTTA-1\n+TTTATCCTGTTGTG-1\n+TTTCACGAGGTTCA-1\n+TTTCAGTGGAAGGC-1\n+TTTCAGTGTCACGA-1\n+TTTCAGTGTCTATC-1\n+TTTCAGTGTGCAGT-1\n+TTTCCAGAGGTGAG-1\n+TTTCGAACACCTGA-1\n+TTTCGAACTCTCAT-1\n+TTTCTACTGAGGCA-1\n+TTTCTACTTCCTCG-1\n+TTTGCATGAGAGGC-1\n+TTTGCATGCCTCAC-1\n' |
| b |
| diff -r 000000000000 -r 2fd982fab98a test-data/extracted_metrics_file.txt --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/extracted_metrics_file.txt Wed Apr 03 11:46:02 2019 -0400 |
| b |
| b'@@ -0,0 +1,2700 @@\n+AAACATACAACCAC-1,2421\n+AAACATTGAGCTAC-1,4903\n+AAACATTGATCAGC-1,3149\n+AAACCGTGCTTCCG-1,2639\n+AAACCGTGTATGCG-1,981\n+AAACGCACTGGTAC-1,2164\n+AAACGCTGACCAGT-1,2176\n+AAACGCTGGTTCTT-1,2260\n+AAACGCTGTAGCCA-1,1276\n+AAACGCTGTTTCTG-1,1103\n+AAACTTGAAAAACG-1,3918\n+AAACTTGATCCAGA-1,2392\n+AAAGAGACGAGATA-1,2412\n+AAAGAGACGCGAGA-1,3034\n+AAAGAGACGGACTT-1,1152\n+AAAGAGACGGCATT-1,792\n+AAAGATCTGGGCAA-1,1348\n+AAAGCAGAAGCCAT-1,1158\n+AAAGCAGATATCGG-1,4586\n+AAAGCCTGTATGCG-1,2929\n+AAAGGCCTGTCTAG-1,4974\n+AAAGTTTGATCACG-1,1270\n+AAAGTTTGGGGTGA-1,3286\n+AAAGTTTGTAGAGA-1,1102\n+AAAGTTTGTAGCGT-1,2684\n+AAATCAACAATGCC-1,2321\n+AAATCAACACCAGT-1,1414\n+AAATCAACCAGGAG-1,2801\n+AAATCAACCCTATT-1,5680\n+AAATCAACGGAAGC-1,3473\n+AAATCAACTCGCAA-1,2812\n+AAATCATGACCACA-1,4128\n+AAATCCCTCCACAA-1,956\n+AAATCCCTGCTATG-1,822\n+AAATGTTGAACGAA-1,3211\n+AAATGTTGCCACAA-1,1761\n+AAATGTTGTGGCAT-1,2763\n+AAATTCGAAGGTTC-1,2741\n+AAATTCGAATCACG-1,2567\n+AAATTCGAGCTGAT-1,2971\n+AAATTCGAGGAGTG-1,2981\n+AAATTCGATTCTCA-1,2643\n+AAATTGACACGACT-1,2359\n+AAATTGACTCGCTC-1,3412\n+AACAAACTCATTTC-1,2179\n+AACAAACTTTCGTT-1,2688\n+AACAATACGACGAG-1,2104\n+AACACGTGCAGAGG-1,1801\n+AACACGTGGAAAGT-1,2632\n+AACACGTGGAACCT-1,2280\n+AACACGTGGCTACA-1,2653\n+AACACGTGTACGAC-1,3571\n+AACAGCACAAGAGT-1,689\n+AACATTGATGGGAG-1,4713\n+AACCAGTGATACCG-1,3841\n+AACCCAGATCGCTC-1,2343\n+AACCGATGCTCCCA-1,2295\n+AACCGATGGTCATG-1,2633\n+AACCGATGTTCTAC-1,2296\n+AACCGCCTAGCGTT-1,3391\n+AACCGCCTCTACGA-1,3998\n+AACCTACTGTGAGG-1,5687\n+AACCTACTGTGTTG-1,2675\n+AACCTTACGAGACG-1,2771\n+AACCTTACGCGAGA-1,1248\n+AACCTTACTAACGC-1,1947\n+AACCTTTGGACGGA-1,2078\n+AACCTTTGTACGCA-1,4621\n+AACGCAACAAGTAG-1,2049\n+AACGCATGACCCAA-1,2778\n+AACGCATGCCTTCG-1,2866\n+AACGCATGTACTTC-1,2915\n+AACGCCCTCGGGAA-1,2503\n+AACGCCCTCGTACA-1,1915\n+AACGCCCTGCTTAG-1,1074\n+AACGCCCTGGCATT-1,1442\n+AACGTCGAGTATCG-1,2149\n+AACGTGTGAAAGCA-1,2820\n+AACGTGTGGCGGAA-1,2071\n+AACGTGTGTCCAAG-1,1665\n+AACGTGTGTGCTTT-1,1933\n+AACTACCTTAGAGA-1,2876\n+AACTCACTCAAGCT-1,2607\n+AACTCACTTGGAGG-1,2124\n+AACTCGGAAAGTGA-1,1840\n+AACTCGGAAGGTCT-1,1290\n+AACTCTTGCAGGAG-1,2103\n+AACTGTCTCCCTTG-1,2331\n+AACTTGCTACGCTA-1,2336\n+AACTTGCTGGGACA-1,1864\n+AAGAACGAGTGTTG-1,780\n+AAGAAGACGTAGGG-1,1440\n+AAGACAGAAGTCTG-1,1125\n+AAGACAGAGGATCT-1,2315\n+AAGACAGATTACCT-1,2309\n+AAGAGATGGGTAGG-1,1346\n+AAGATGGAAAACAG-1,878\n+AAGATGGAGAACTC-1,3117\n+AAGATGGAGATAAG-1,4023\n+AAGATTACAACCTG-1,2119\n+AAGATTACAGATCC-1,4065\n+AAGATTACCCGTTC-1,2763\n+AAGATTACCGCCTT-1,3063\n+AAGATTACCTCAAG-1,2280\n+AAGATTACTCCTCG-1,642\n+AAGCAAGAGCGAGA-1,2480\n+AAGCAAGAGCTTAG-1,2171\n+AAGCAAGAGGTGTT-1,1698\n+AAGCACTGAGCAAA-1,3239\n+AAGCACTGCATACG-1,803\n+AAGCACTGGTTCTT-1,6157\n+AAGCCAACGTGTTG-1,2764\n+AAGCCATGAACTGC-1,7070\n+AAGCCATGACACGT-1,1538\n+AAGCCATGCGTGAT-1,2111\n+AAGCCATGTCTCGC-1,909\n+AAGCCTGACATGCA-1,1790\n+AAGCCTGACCGAAT-1,1048\n+AAGCGACTCCTCAC-1,2103\n+AAGCGACTGTGTCA-1,3131\n+AAGCGACTTACAGC-1,1494\n+AAGCGACTTTGACG-1,3668\n+AAGCGTACGTCTTT-1,2048\n+AAGGCTTGCGAACT-1,2076\n+AAGGTCACGGTTAC-1,1870\n+AAGGTCACTGTTTC-1,1775\n+AAGGTCACTTCCCG-1,2387\n+AAGGTCTGACAGTC-1,2589\n+AAGGTCTGCAGATC-1,968\n+AAGGTCTGGTATGC-1,715\n+AAGTAACTCTGAAC-1,1874\n+AAGTAACTGAGATA-1,659\n+AAGTAGGATACAGC-1,1725\n+AAGTATACCGAACT-1,3253\n+AAGTCCGACTTGTT-1,1523\n+AAGTCCGATAGAAG-1,3369\n+AAGTCTCTAGTCGT-1,3287\n+AAGTCTCTCGGAGA-1,1838\n+AAGTGGCTTGGAGG-1,1572\n+AAGTTCCTCATTCT-1,2336\n+AAGTTCCTTCTTAC-1,3265\n+AATAAGCTCGAATC-1,2760\n+AATAAGCTCGTTGA-1,1606\n+AATACCCTGGACGA-1,1501\n+AATACCCTGGCATT-1,3310\n+AATACTGAAAGGGC-1,1747\n+AATACTGAATTGGC-1,1816\n+AATAGGGAACCCTC-1,2877\n+AATAGGGAGAATGA-1,1864\n+AATCAAACTATCGG-1,1457\n+AATCCGGAATGCTG-1,2805\n+AATCCTACCGGTAT-1,2440\n+AATCCTTGACGGGA-1,2533\n+AATCCTTGGTGAGG-1,1754\n+AATCGGTGGAACTC-1,1955\n+AATCGGTGTGCTTT-1,1896\n+AATCTAGAAAAGTG-1,2582\n+AATCTAGAATCGGT-1,3168\n+AATCTCACAGCCTA-1,3553\n+AATCTCACTCTAGG-1,2149\n+AATCTCTGAACAGA-1,2183\n+AATCTCTGCTTTAC-1,1710\n+AATGATACACCAAC-1,1918\n+AATGATACGGTCAT-1,3095\n+AATGCGTGACACCA-1,2866\n+AATGCGTGGACGGA-1,4439\n+AATGCGTGGCTATG-1,2225\n+AATGGAGAATCGTG-1,2381\n+AATGGAGATCCTTA-1,1959\n+AATGGCTGACACCA-1,3038\n+AATGGCTGCGTGAT-1,2211\n+AATGGCTGTAAAGG-1,1286\n+AATGGCTGTACTCT-1,1208\n+AATGGCTGTGAAG'..b',4907\n+TGTAGGTGCGAGAG-1,1144\n+TGTAGGTGCTATGG-1,4234\n+TGTAGGTGCTCTAT-1,6287\n+TGTAGGTGTGCTGA-1,2544\n+TGTAGTCTTCCAGA-1,4154\n+TGTAGTCTTGCACA-1,2177\n+TGTATCTGTTAGGC-1,1996\n+TGTATGCTCATGGT-1,1479\n+TGTATGCTGTAGGG-1,1455\n+TGTATGCTTTCATC-1,1968\n+TGTCAGGAATACCG-1,2767\n+TGTCAGGAGATGAA-1,4083\n+TGTCTAACCCCTTG-1,1978\n+TGTGACGATTCTCA-1,3098\n+TGTGAGACTGTCAG-1,2666\n+TGTGAGACTTGAGC-1,2447\n+TGTGAGTGACCACA-1,1583\n+TGTGAGTGAGTGCT-1,4110\n+TGTGAGTGGAGATA-1,969\n+TGTGATCTCTCTAT-1,1690\n+TGTGATCTGACACT-1,1108\n+TGTGGATGGCCAAT-1,1945\n+TGTTAAGACAAAGA-1,848\n+TGTTAAGATAAGGA-1,2173\n+TGTTAAGATTGGCA-1,598\n+TGTTACACCGCATA-1,3410\n+TGTTACACGACTAC-1,1953\n+TGTTACTGGCTACA-1,2483\n+TGTTACTGTAGTCG-1,1772\n+TTAACCACCGTAAC-1,2192\n+TTAACCACTAAGGA-1,1198\n+TTAACCACTCAGAC-1,1828\n+TTACACACGTGTTG-1,2613\n+TTACACACTCCTAT-1,2508\n+TTACCATGAATCGC-1,2421\n+TTACCATGGTTGAC-1,4142\n+TTACCATGTGTCTT-1,1123\n+TTACCATGTTGTGG-1,1548\n+TTACGACTGAGAGC-1,3288\n+TTACGACTTGACAC-1,1902\n+TTACGTACGTTCAG-1,947\n+TTACTCGAACGTTG-1,15301\n+TTACTCGAAGAATG-1,3863\n+TTACTCGACGCAAT-1,5031\n+TTACTCGAGGGTGA-1,2549\n+TTACTCGATCTACT-1,2551\n+TTAGAATGTGGTGT-1,1740\n+TTAGAATGTGTAGC-1,627\n+TTAGACCTCCTACC-1,2485\n+TTAGACCTCCTTTA-1,2311\n+TTAGCTACAACCGT-1,2101\n+TTAGCTACTGTCCC-1,3703\n+TTAGCTACTTTCGT-1,2921\n+TTAGGGACGCGAAG-1,2200\n+TTAGGGTGCTGGAT-1,2846\n+TTAGGGTGTCCTGC-1,2734\n+TTAGGTCTACTTTC-1,1106\n+TTAGTCACCAGTTG-1,2674\n+TTAGTCTGAAAGCA-1,2747\n+TTAGTCTGCCAACA-1,1735\n+TTAGTCTGTGCACA-1,1692\n+TTATCCGACTAGTG-1,1903\n+TTATCCGAGAAAGT-1,4231\n+TTATGAGAGATAAG-1,1293\n+TTATGCACGTCACA-1,1590\n+TTATGGCTTATGGC-1,6165\n+TTATTCCTATGCTG-1,3963\n+TTATTCCTGGACAG-1,2514\n+TTATTCCTGGTACT-1,2496\n+TTATTCCTTCGTGA-1,3207\n+TTCAAAGATAAAGG-1,2385\n+TTCAACACAACAGA-1,2430\n+TTCAACACCCCAAA-1,2094\n+TTCAACACGGACGA-1,2584\n+TTCAAGCTAAGAAC-1,2641\n+TTCAAGCTAGATGA-1,2974\n+TTCAAGCTGTTGAC-1,2375\n+TTCAAGCTTCCAAG-1,740\n+TTCAAGCTTGATGC-1,2404\n+TTCAAGCTTTCGCC-1,2878\n+TTCACAACCCGTTC-1,2526\n+TTCACAACGTCTGA-1,678\n+TTCAGACTACCCAA-1,789\n+TTCAGACTCTCGAA-1,2264\n+TTCAGTACCGACTA-1,2769\n+TTCAGTACTCAAGC-1,5220\n+TTCAGTACTCCTAT-1,1850\n+TTCAGTTGCCAAGT-1,2003\n+TTCAGTTGTCCTTA-1,1975\n+TTCAGTTGTCTAGG-1,1031\n+TTCAGTTGTCTCGC-1,1865\n+TTCATCGAGGTGGA-1,1914\n+TTCATGTGTGGTGT-1,3025\n+TTCATTCTATGTCG-1,2625\n+TTCATTCTTCTCTA-1,1986\n+TTCCAAACCTATGG-1,1057\n+TTCCAAACCTCCCA-1,2726\n+TTCCAAACTCCCAC-1,793\n+TTCCAAACTTGACG-1,1647\n+TTCCATGACGAGAG-1,1840\n+TTCCATGACTGTCC-1,1050\n+TTCCCACTTGAGGG-1,1520\n+TTCCCACTTGTCTT-1,3163\n+TTCCTAGAAAGTGA-1,1552\n+TTCCTAGACTAGTG-1,1943\n+TTCGAGGACTCTAT-1,2746\n+TTCGAGGAGGGCAA-1,1816\n+TTCGAGGATAGAAG-1,2749\n+TTCGATTGAGCATC-1,1910\n+TTCGGAGAATGCCA-1,1191\n+TTCGGAGATGTGCA-1,2412\n+TTCGTATGAAAAGC-1,1991\n+TTCGTATGGATAGA-1,1983\n+TTCGTATGGTCTGA-1,2258\n+TTCGTATGTCCTTA-1,4348\n+TTCTACGAACGTAC-1,2494\n+TTCTACGAGTTGGT-1,2589\n+TTCTAGTGACACGT-1,3018\n+TTCTAGTGCATGAC-1,2073\n+TTCTAGTGGAGAGC-1,1586\n+TTCTAGTGGTCACA-1,2832\n+TTCTCAGAAGAGAT-1,2189\n+TTCTCAGAAGCATC-1,2497\n+TTCTCAGATGGAGG-1,2643\n+TTCTGATGGAGACG-1,2434\n+TTCTTACTCTGGAT-1,1741\n+TTGAACCTCCTTGC-1,1746\n+TTGAATGAACTACG-1,2289\n+TTGAATGACTTACT-1,2102\n+TTGAATGATCTCAT-1,2015\n+TTGACACTCTGTAG-1,1943\n+TTGACACTGATAAG-1,1315\n+TTGAGGACAGAACA-1,2956\n+TTGAGGACTACGCA-1,6344\n+TTGAGGTGGACGGA-1,2011\n+TTGCATTGAGCTAC-1,1991\n+TTGCATTGCTAAGC-1,3248\n+TTGCATTGTGACTG-1,2441\n+TTGCTAACACCAAC-1,1921\n+TTGCTAACACGCTA-1,2576\n+TTGCTAACCACTCC-1,1943\n+TTGCTATGGTACGT-1,3109\n+TTGCTATGGTAGGG-1,3406\n+TTGGAGACCAATCG-1,4166\n+TTGGAGACGCTATG-1,2662\n+TTGGAGACTATGGC-1,1779\n+TTGGGAACTGAACC-1,2652\n+TTGGTACTACTGGT-1,3268\n+TTGGTACTCTTAGG-1,2928\n+TTGGTACTGAATCC-1,1855\n+TTGGTACTGGATTC-1,1883\n+TTGTACACGTTGTG-1,1537\n+TTGTACACTTGCAG-1,2260\n+TTGTAGCTAGCTCA-1,2519\n+TTGTAGCTCTCTTA-1,2136\n+TTGTCATGGACGGA-1,2178\n+TTTAGAGATCCTCG-1,2362\n+TTTAGCTGATACCG-1,2756\n+TTTAGCTGGATACC-1,2454\n+TTTAGCTGTACTCT-1,5678\n+TTTAGGCTCCTTTA-1,1984\n+TTTATCCTGTTGTG-1,3680\n+TTTCACGAGGTTCA-1,2037\n+TTTCAGTGGAAGGC-1,1781\n+TTTCAGTGTCACGA-1,1634\n+TTTCAGTGTCTATC-1,937\n+TTTCAGTGTGCAGT-1,1322\n+TTTCCAGAGGTGAG-1,2187\n+TTTCGAACACCTGA-1,4460\n+TTTCGAACTCTCAT-1,3461\n+TTTCTACTGAGGCA-1,3447\n+TTTCTACTTCCTCG-1,1684\n+TTTGCATGAGAGGC-1,1024\n+TTTGCATGCCTCAC-1,1985\n' |
| b |
| diff -r 000000000000 -r 2fd982fab98a test-data/genes.tsv --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/genes.tsv Wed Apr 03 11:46:02 2019 -0400 |
| b |
| b'@@ -0,0 +1,32738 @@\n+ENSG00000243485\tMIR1302-10\n+ENSG00000237613\tFAM138A\n+ENSG00000186092\tOR4F5\n+ENSG00000238009\tRP11-34P13.7\n+ENSG00000239945\tRP11-34P13.8\n+ENSG00000237683\tAL627309.1\n+ENSG00000239906\tRP11-34P13.14\n+ENSG00000241599\tRP11-34P13.9\n+ENSG00000228463\tAP006222.2\n+ENSG00000237094\tRP4-669L17.10\n+ENSG00000235249\tOR4F29\n+ENSG00000236601\tRP4-669L17.2\n+ENSG00000236743\tRP5-857K21.15\n+ENSG00000231709\tRP5-857K21.1\n+ENSG00000235146\tRP5-857K21.2\n+ENSG00000239664\tRP5-857K21.3\n+ENSG00000230021\tRP5-857K21.4\n+ENSG00000223659\tRP5-857K21.5\n+ENSG00000185097\tOR4F16\n+ENSG00000235373\tRP11-206L10.3\n+ENSG00000240618\tRP11-206L10.5\n+ENSG00000229905\tRP11-206L10.4\n+ENSG00000228327\tRP11-206L10.2\n+ENSG00000237491\tRP11-206L10.9\n+ENSG00000269831\tAL669831.1\n+ENSG00000177757\tFAM87B\n+ENSG00000225880\tLINC00115\n+ENSG00000230368\tFAM41C\n+ENSG00000269308\tAL645608.2\n+ENSG00000272438\tRP11-54O7.16\n+ENSG00000230699\tRP11-54O7.1\n+ENSG00000241180\tRP11-54O7.2\n+ENSG00000223764\tRP11-54O7.3\n+ENSG00000187634\tSAMD11\n+ENSG00000268179\tAL645608.1\n+ENSG00000188976\tNOC2L\n+ENSG00000187961\tKLHL17\n+ENSG00000187583\tPLEKHN1\n+ENSG00000187642\tC1orf170\n+ENSG00000272512\tRP11-54O7.17\n+ENSG00000188290\tHES4\n+ENSG00000224969\tRP11-54O7.11\n+ENSG00000187608\tISG15\n+ENSG00000188157\tAGRN\n+ENSG00000273443\tRP11-54O7.18\n+ENSG00000237330\tRNF223\n+ENSG00000131591\tC1orf159\n+ENSG00000223823\tRP11-465B22.5\n+ENSG00000272141\tRP11-465B22.8\n+ENSG00000205231\tTTLL10-AS1\n+ENSG00000162571\tTTLL10\n+ENSG00000186891\tTNFRSF18\n+ENSG00000186827\tTNFRSF4\n+ENSG00000078808\tSDF4\n+ENSG00000176022\tB3GALT6\n+ENSG00000184163\tFAM132A\n+ENSG00000260179\tRP5-902P8.12\n+ENSG00000160087\tUBE2J2\n+ENSG00000230415\tRP5-902P8.10\n+ENSG00000162572\tSCNN1D\n+ENSG00000131584\tACAP3\n+ENSG00000169972\tPUSL1\n+ENSG00000127054\tCPSF3L\n+ENSG00000224051\tGLTPD1\n+ENSG00000169962\tTAS1R3\n+ENSG00000107404\tDVL1\n+ENSG00000162576\tMXRA8\n+ENSG00000175756\tAURKAIP1\n+ENSG00000221978\tCCNL2\n+ENSG00000224870\tRP4-758J18.2\n+ENSG00000242485\tMRPL20\n+ENSG00000272455\tRP4-758J18.13\n+ENSG00000235098\tANKRD65\n+ENSG00000225905\tRP4-758J18.7\n+ENSG00000205116\tTMEM88B\n+ENSG00000225285\tRP4-758J18.10\n+ENSG00000179403\tVWA1\n+ENSG00000215915\tATAD3C\n+ENSG00000160072\tATAD3B\n+ENSG00000197785\tATAD3A\n+ENSG00000205090\tTMEM240\n+ENSG00000160075\tSSU72\n+ENSG00000215014\tAL645728.1\n+ENSG00000228594\tC1orf233\n+ENSG00000272106\tRP11-345P4.9\n+ENSG00000197530\tMIB2\n+ENSG00000189409\tMMP23B\n+ENSG00000248333\tCDK11B\n+ENSG00000272004\tRP11-345P4.10\n+ENSG00000189339\tSLC35E2B\n+ENSG00000269737\tRP11-345P4.7\n+ENSG00000008128\tCDK11A\n+ENSG00000215790\tSLC35E2\n+ENSG00000008130\tNADK\n+ENSG00000078369\tGNB1\n+ENSG00000231050\tRP1-140A9.1\n+ENSG00000169885\tCALML6\n+ENSG00000178821\tTMEM52\n+ENSG00000142609\tC1orf222\n+ENSG00000233542\tRP11-547D24.1\n+ENSG00000187730\tGABRD\n+ENSG00000226969\tRP11-547D24.3\n+ENSG00000067606\tPRKCZ\n+ENSG00000271806\tRP5-892K4.1\n+ENSG00000182873\tRP11-181G12.2\n+ENSG00000162585\tC1orf86\n+ENSG00000269554\tAL590822.2\n+ENSG00000203301\tAL590822.1\n+ENSG00000243558\tRP11-181G12.5\n+ENSG00000234396\tRP11-181G12.4\n+ENSG00000157933\tSKI\n+ENSG00000116151\tMORN1\n+ENSG00000269753\tAL589739.1\n+ENSG00000157916\tRER1\n+ENSG00000157911\tPEX10\n+ENSG00000149527\tPLCH2\n+ENSG00000224387\tRP3-395M20.2\n+ENSG00000229393\tRP3-395M20.3\n+ENSG00000157881\tPANK4\n+ENSG00000197921\tHES5\n+ENSG00000272449\tRP3-395M20.12\n+ENSG00000157873\tTNFRSF14\n+ENSG00000225931\tRP3-395M20.7\n+ENSG00000228037\tRP3-395M20.9\n+ENSG00000157870\tFAM213B\n+ENSG00000142606\tMMEL1\n+ENSG00000237058\tRP13-436F16.1\n+ENSG00000215912\tTTC34\n+ENSG00000233234\tRP11-740P5.2\n+ENSG00000231630\tRP11-740P5.3\n+ENSG00000169717\tACTRT2\n+ENSG00000177133\tLINC00982\n+ENSG00000142611\tPRDM16\n+ENSG00000226286\tRP1-163G9.2\n+ENSG00000272235\tRP11-22L13.1\n+ENSG00000130762\tARHGEF16\n+ENSG00000272088\tRP11-168F9.2\n+ENSG00000162591\tMEGF6\n+ENSG00000238260\tRP11-46F15.2\n+ENSG00000158109\tTPRG1L\n+ENSG00000116213\tWRAP73\n+ENSG00000078900\tTP73\n+ENSG00000227589\tRP5-1092A11.5\n+ENSG00000235131\tRP5-1092A11.2\n+ENSG00000227372\tTP73-AS1\n+ENSG00000162592\tCCDC27\n+ENSG00000235169\tSMIM1\n+ENSG00000130764\tLRRC47\n+ENSG00000272153\tRP1-286D6.5\n+ENSG000'..b'G00000160202\tCRYAA\n+ENSG00000237864\tLINC00322\n+ENSG00000237989\tAP001046.5\n+ENSG00000225637\tAP001046.6\n+ENSG00000142178\tSIK1\n+ENSG00000188660\tLINC00319\n+ENSG00000185186\tLINC00313\n+ENSG00000223975\tAP001048.4\n+ENSG00000160207\tHSF2BP\n+ENSG00000160208\tRRP1B\n+ENSG00000160209\tPDXK\n+ENSG00000160213\tCSTB\n+ENSG00000160214\tRRP1\n+ENSG00000215458\tAP001053.11\n+ENSG00000160216\tAGPAT3\n+ENSG00000160218\tTRAPPC10\n+ENSG00000241945\tPWP2\n+ENSG00000160221\tC21orf33\n+ENSG00000225331\tAP001055.6\n+ENSG00000267913\tAP001055.1\n+ENSG00000237604\tAP001056.1\n+ENSG00000232124\tAP001057.1\n+ENSG00000232698\tAP001058.3\n+ENSG00000160223\tICOSLG\n+ENSG00000142182\tDNMT3L\n+ENSG00000232010\tAP001059.5\n+ENSG00000160224\tAIRE\n+ENSG00000141959\tPFKL\n+ENSG00000160226\tC21orf2\n+ENSG00000184441\tAP001062.7\n+ENSG00000232969\tAP001062.9\n+ENSG00000260256\tAP001063.1\n+ENSG00000142185\tTRPM2\n+ENSG00000230061\tAP001065.2\n+ENSG00000229356\tLRRC3-AS1\n+ENSG00000160233\tLRRC3\n+ENSG00000269430\tLRRC3DN\n+ENSG00000228709\tAP001065.15\n+ENSG00000175894\tTSPEAR\n+ENSG00000235890\tTSPEAR-AS1\n+ENSG00000182912\tC21orf90\n+ENSG00000215455\tKRTAP10-1\n+ENSG00000205445\tKRTAP10-2\n+ENSG00000212935\tKRTAP10-3\n+ENSG00000215454\tKRTAP10-4\n+ENSG00000241123\tKRTAP10-5\n+ENSG00000188155\tKRTAP10-6\n+ENSG00000205441\tKRTAP10-7\n+ENSG00000187766\tKRTAP10-8\n+ENSG00000221837\tKRTAP10-9\n+ENSG00000221859\tKRTAP10-10\n+ENSG00000243489\tKRTAP10-11\n+ENSG00000212933\tKRTAP12-4\n+ENSG00000205439\tKRTAP12-3\n+ENSG00000221864\tKRTAP12-2\n+ENSG00000187175\tKRTAP12-1\n+ENSG00000189169\tKRTAP10-12\n+ENSG00000184787\tUBE2G2\n+ENSG00000236519\tAL773604.8\n+ENSG00000184900\tSUMO3\n+ENSG00000183255\tPTTG1IP\n+ENSG00000160255\tITGB2\n+ENSG00000227039\tITGB2-AS1\n+ENSG00000183250\tC21orf67\n+ENSG00000272825\tLL21NC02-1C16.2\n+ENSG00000160256\tFAM207A\n+ENSG00000234880\tLINC00163\n+ENSG00000261706\tAP001505.9\n+ENSG00000224930\tLINC00162\n+ENSG00000268856\tAP001579.1\n+ENSG00000197381\tADARB1\n+ENSG00000268805\tPRED57\n+ENSG00000267857\tPRED58\n+ENSG00000182586\tLINC00334\n+ENSG00000186866\tPOFUT2\n+ENSG00000223768\tLINC00205\n+ENSG00000184274\tLINC00315\n+ENSG00000229382\tBX322557.13\n+ENSG00000237664\tLINC00316\n+ENSG00000228355\tBX322559.3\n+ENSG00000182871\tCOL18A1\n+ENSG00000224574\tCOL18A1-AS2\n+ENSG00000183535\tCOL18A1-AS1\n+ENSG00000173638\tSLC19A1\n+ENSG00000233922\tAL133493.2\n+ENSG00000183570\tPCBP3\n+ENSG00000267883\tPRED60\n+ENSG00000205424\tAL592528.1\n+ENSG00000268040\tPRED62\n+ENSG00000142156\tCOL6A1\n+ENSG00000224413\tAP001476.2\n+ENSG00000228235\tAP001476.4\n+ENSG00000226115\tAP001476.3\n+ENSG00000227438\tAP001471.1\n+ENSG00000142173\tCOL6A2\n+ENSG00000160282\tFTCD\n+ENSG00000237338\tFTCD-AS1\n+ENSG00000160284\tSPATC1L\n+ENSG00000228404\tAP001468.58\n+ENSG00000160285\tLSS\n+ENSG00000235878\tAP001468.1\n+ENSG00000223901\tAP001469.5\n+ENSG00000215424\tMCM3AP-AS1\n+ENSG00000160294\tMCM3AP\n+ENSG00000228137\tAP001469.7\n+ENSG00000239415\tAP001469.9\n+ENSG00000182362\tYBEY\n+ENSG00000160298\tC21orf58\n+ENSG00000160299\tPCNT\n+ENSG00000160305\tDIP2A\n+ENSG00000160307\tS100B\n+ENSG00000160310\tPRMT2\n+ENSG00000198888\tMT-ND1\n+ENSG00000198763\tMT-ND2\n+ENSG00000198804\tMT-CO1\n+ENSG00000198712\tMT-CO2\n+ENSG00000228253\tMT-ATP8\n+ENSG00000198899\tMT-ATP6\n+ENSG00000198938\tMT-CO3\n+ENSG00000198840\tMT-ND3\n+ENSG00000212907\tMT-ND4L\n+ENSG00000198886\tMT-ND4\n+ENSG00000198786\tMT-ND5\n+ENSG00000198695\tMT-ND6\n+ENSG00000198727\tMT-CYB\n+ENSG00000215642\tAL360154.1\n+ENSG00000234295\tAC109135.1\n+ENSG00000215750\tAC145212.1\n+ENSG00000215689\tMGC39584\n+ENSG00000229510\tAC018692.2\n+ENSG00000220903\tFRG2C\n+ENSG00000233094\tAL592170.1\n+ENSG00000212857\tAL356585.1\n+ENSG00000215781\tAC011043.1\n+ENSG00000218497\tZNF84\n+ENSG00000236575\tZNF26\n+ENSG00000229631\tAL603926.1\n+ENSG00000220023\tAL592183.1\n+ENSG00000212884\tAC011841.1\n+ENSG00000268851\tAL162851.1\n+ENSG00000269725\tBX072566.2\n+ENSG00000237375\tBX072566.1\n+ENSG00000215615\tAL354822.1\n+ENSG00000215764\tKIR2DL2\n+ENSG00000217792\tKIR3DL2\n+ENSG00000268276\tAL590523.1\n+ENSG00000148828\tCT476828.1\n+ENSG00000215700\tPNRC2\n+ENSG00000215699\tSRSF10\n+ENSG00000215635\tAC145205.1\n+ENSG00000268590\tBAGE5\n+ENSG00000251180\tCU459201.1\n+ENSG00000215616\tAC002321.2\n+ENSG00000215611\tAC002321.1\n' |
| b |
| diff -r 000000000000 -r 2fd982fab98a test-data/matrix.mtx --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/matrix.mtx Wed Apr 03 11:46:02 2019 -0400 |
| b |
| b'@@ -0,0 +1,2286887 @@\n+%%MatrixMarket matrix coordinate real general\n+%\n+32738 2700 2286884\n+32709 1 4\n+32707 1 1\n+32706 1 10\n+32704 1 1\n+32703 1 5\n+32702 1 6\n+32700 1 10\n+32699 1 25\n+32698 1 3\n+32697 1 8\n+32527 1 1\n+32496 1 1\n+32399 1 1\n+32346 1 1\n+32324 1 1\n+32209 1 1\n+32129 1 1\n+32106 1 1\n+32093 1 1\n+32068 1 1\n+32045 1 1\n+32023 1 25\n+32017 1 1\n+31998 1 1\n+31992 1 2\n+31971 1 2\n+31965 1 1\n+31964 1 1\n+31955 1 1\n+31929 1 1\n+31927 1 1\n+31886 1 1\n+31856 1 1\n+31785 1 1\n+31760 1 1\n+31666 1 1\n+31600 1 2\n+31591 1 1\n+31421 1 5\n+31399 1 10\n+31258 1 28\n+31189 1 7\n+31178 1 1\n+31169 1 1\n+31128 1 1\n+30984 1 1\n+30972 1 1\n+30971 1 37\n+30970 1 1\n+30958 1 2\n+30934 1 12\n+30927 1 1\n+30912 1 4\n+30895 1 1\n+30872 1 2\n+30849 1 1\n+30795 1 1\n+30792 1 1\n+30658 1 1\n+30656 1 22\n+30586 1 1\n+30570 1 5\n+30529 1 2\n+30406 1 1\n+30404 1 1\n+30379 1 2\n+30343 1 1\n+30314 1 1\n+30248 1 5\n+30170 1 1\n+30161 1 1\n+30147 1 1\n+30136 1 5\n+30126 1 1\n+30105 1 18\n+30038 1 1\n+30037 1 5\n+29959 1 1\n+29949 1 4\n+29943 1 19\n+29915 1 10\n+29910 1 3\n+29842 1 1\n+29831 1 1\n+29824 1 2\n+29795 1 1\n+29789 1 1\n+29782 1 1\n+29744 1 1\n+29734 1 4\n+29652 1 1\n+29634 1 1\n+29621 1 1\n+29620 1 8\n+29601 1 1\n+29569 1 1\n+29568 1 1\n+29515 1 1\n+29506 1 5\n+29498 1 1\n+29463 1 22\n+29454 1 1\n+29452 1 1\n+29450 1 1\n+29435 1 1\n+29431 1 1\n+29408 1 1\n+29378 1 1\n+29303 1 3\n+29210 1 1\n+29176 1 1\n+29167 1 1\n+29141 1 1\n+29073 1 1\n+29041 1 1\n+29035 1 1\n+28984 1 1\n+28966 1 1\n+28934 1 1\n+28924 1 1\n+28736 1 1\n+28676 1 1\n+28622 1 1\n+28593 1 2\n+28496 1 1\n+28313 1 1\n+28309 1 14\n+28290 1 1\n+28273 1 1\n+28165 1 1\n+28050 1 1\n+27960 1 2\n+27884 1 2\n+27867 1 1\n+27842 1 1\n+27838 1 1\n+27833 1 1\n+27827 1 1\n+27768 1 1\n+27724 1 1\n+27683 1 1\n+27682 1 4\n+27677 1 1\n+27663 1 1\n+27659 1 3\n+27639 1 1\n+27634 1 1\n+27617 1 4\n+27556 1 1\n+27548 1 1\n+27547 1 1\n+27519 1 1\n+27514 1 1\n+27501 1 1\n+27495 1 2\n+27334 1 1\n+27287 1 1\n+27237 1 1\n+27156 1 1\n+27090 1 5\n+27066 1 1\n+27056 1 1\n+27031 1 7\n+26959 1 1\n+26958 1 1\n+26938 1 1\n+26913 1 15\n+26825 1 18\n+26806 1 1\n+26655 1 11\n+26629 1 1\n+26499 1 1\n+26491 1 1\n+26455 1 2\n+26339 1 11\n+26322 1 1\n+26308 1 3\n+26286 1 1\n+26250 1 1\n+26216 1 1\n+26186 1 2\n+26185 1 1\n+26184 1 1\n+26169 1 1\n+26136 1 1\n+26027 1 1\n+26014 1 29\n+25975 1 1\n+25914 1 5\n+25895 1 2\n+25893 1 2\n+25796 1 1\n+25785 1 1\n+25524 1 1\n+25486 1 1\n+25482 1 1\n+25426 1 2\n+25265 1 1\n+25236 1 1\n+25215 1 1\n+25194 1 1\n+25192 1 2\n+25171 1 1\n+25168 1 1\n+25146 1 1\n+25067 1 1\n+24978 1 13\n+24804 1 1\n+24803 1 1\n+24680 1 1\n+24674 1 44\n+24663 1 1\n+24606 1 1\n+24603 1 1\n+24598 1 1\n+24406 1 1\n+24373 1 1\n+24369 1 1\n+24342 1 1\n+24252 1 1\n+24195 1 1\n+24185 1 1\n+24088 1 19\n+24058 1 1\n+24050 1 4\n+23994 1 1\n+23960 1 1\n+23911 1 1\n+23852 1 1\n+23847 1 1\n+23821 1 1\n+23796 1 1\n+23795 1 76\n+23779 1 1\n+23776 1 1\n+23742 1 1\n+23666 1 1\n+23613 1 1\n+23467 1 1\n+23385 1 3\n+23207 1 1\n+23123 1 1\n+23085 1 1\n+23081 1 12\n+23078 1 1\n+23058 1 1\n+23052 1 1\n+22987 1 6\n+22922 1 1\n+22896 1 1\n+22893 1 1\n+22869 1 2\n+22836 1 1\n+22831 1 1\n+22811 1 1\n+22805 1 1\n+22744 1 1\n+22742 1 1\n+22740 1 4\n+22658 1 2\n+22571 1 1\n+22553 1 2\n+22493 1 1\n+22489 1 1\n+22472 1 1\n+22377 1 2\n+22235 1 1\n+22152 1 1\n+22045 1 1\n+22041 1 3\n+22029 1 1\n+22021 1 1\n+22010 1 10\n+21899 1 3\n+21866 1 1\n+21863 1 18\n+21854 1 1\n+21805 1 1\n+21790 1 1\n+21710 1 1\n+21650 1 1\n+21548 1 1\n+21537 1 5\n+21531 1 1\n+21513 1 1\n+21447 1 10\n+21441 1 1\n+21406 1 1\n+21379 1 1\n+21327 1 1\n+21230 1 1\n+21215 1 3\n+21115 1 1\n+21080 1 1\n+21054 1 1\n+20959 1 2\n+20906 1 4\n+20893 1 1\n+20881 1 1\n+20872 1 1\n+20869 1 4\n+20861 1 1\n+20815 1 1\n+20809 1 5\n+20769 1 2\n+20762 1 2\n+20692 1 1\n+20690 1 1\n+20638 1 1\n+20576 1 1\n+20544 1 1\n+20541 1 1\n+20398 1 5\n+20354 1 3\n+20270 1 2\n+20248 1 3\n+20187 1 1\n+20185 1 2\n+20156 1 3\n+20150 1 5\n+20109 1 1\n+19996 1 1\n+19828 1 14\n+19806 1 1\n+19802 1 4\n+19801 1 2\n+19799 1 1\n+19749 1 1\n+19713 1 1\n+19641 1 1\n+19620 1 1\n+19589 1 1\n+19501 1 1\n+19421 1 23\n+19411 1 1\n+19395 1 1\n+19311 1 1\n+19278 1 1\n+19264 1 1\n+19253 1 1\n+19185 1 1\n+19182 1 1\n+19180 1 2\n+19176 1 5\n+19161 1 1\n+19155 1 49\n+19153 1 2\n+19140 1 7\n+19060 1 1\n+19031 1 1\n+19026 1 1\n+19017 1 1\n+1899'..b'3 2700 1\n+13872 2700 1\n+13828 2700 3\n+13772 2700 1\n+13767 2700 1\n+13760 2700 1\n+13732 2700 14\n+13712 2700 2\n+13629 2700 1\n+13552 2700 1\n+13511 2700 1\n+13463 2700 1\n+13381 2700 1\n+13341 2700 1\n+13303 2700 35\n+13247 2700 1\n+13229 2700 1\n+13154 2700 1\n+13131 2700 1\n+13130 2700 2\n+13127 2700 1\n+13126 2700 3\n+13061 2700 1\n+13051 2700 1\n+12969 2700 1\n+12866 2700 1\n+12822 2700 1\n+12819 2700 1\n+12768 2700 2\n+12718 2700 1\n+12716 2700 1\n+12704 2700 1\n+12639 2700 1\n+12612 2700 1\n+12582 2700 1\n+12524 2700 1\n+12480 2700 1\n+12391 2700 1\n+12364 2700 1\n+12362 2700 1\n+12347 2700 1\n+12312 2700 2\n+12231 2700 1\n+12217 2700 1\n+12049 2700 3\n+11888 2700 10\n+11847 2700 1\n+11790 2700 1\n+11734 2700 1\n+11673 2700 1\n+11551 2700 1\n+11517 2700 1\n+11448 2700 19\n+11352 2700 1\n+11278 2700 2\n+11228 2700 1\n+11224 2700 1\n+11141 2700 1\n+11092 2700 1\n+11083 2700 25\n+10780 2700 2\n+10756 2700 12\n+10745 2700 1\n+10740 2700 20\n+10720 2700 1\n+10719 2700 1\n+10715 2700 1\n+10710 2700 29\n+10692 2700 2\n+10680 2700 1\n+10662 2700 1\n+10642 2700 3\n+10608 2700 4\n+10595 2700 3\n+10593 2700 4\n+10562 2700 1\n+10552 2700 3\n+10539 2700 1\n+10535 2700 3\n+10532 2700 2\n+10441 2700 1\n+10420 2700 1\n+10389 2700 1\n+10294 2700 1\n+10283 2700 1\n+10280 2700 1\n+10189 2700 1\n+10152 2700 8\n+10121 2700 1\n+10089 2700 1\n+10060 2700 1\n+10023 2700 1\n+9994 2700 1\n+9993 2700 1\n+9987 2700 8\n+9977 2700 1\n+9972 2700 11\n+9924 2700 1\n+9887 2700 1\n+9849 2700 1\n+9814 2700 1\n+9800 2700 12\n+9635 2700 1\n+9597 2700 1\n+9591 2700 1\n+9517 2700 1\n+9500 2700 1\n+9178 2700 1\n+9145 2700 5\n+9102 2700 1\n+9065 2700 1\n+9051 2700 3\n+8919 2700 1\n+8907 2700 1\n+8842 2700 1\n+8813 2700 5\n+8810 2700 1\n+8804 2700 1\n+8802 2700 1\n+8756 2700 1\n+8494 2700 1\n+8448 2700 1\n+8435 2700 1\n+8273 2700 1\n+8219 2700 19\n+8186 2700 1\n+7957 2700 1\n+7950 2700 3\n+7906 2700 2\n+7892 2700 1\n+7830 2700 1\n+7779 2700 2\n+7747 2700 1\n+7724 2700 1\n+7591 2700 1\n+7589 2700 2\n+7530 2700 1\n+7461 2700 11\n+7145 2700 1\n+7144 2700 1\n+7135 2700 12\n+7126 2700 1\n+7011 2700 1\n+6986 2700 2\n+6969 2700 1\n+6964 2700 2\n+6954 2700 1\n+6938 2700 1\n+6763 2700 1\n+6747 2700 1\n+6665 2700 1\n+6660 2700 3\n+6584 2700 1\n+6519 2700 1\n+6471 2700 2\n+6467 2700 1\n+6465 2700 2\n+6363 2700 1\n+6277 2700 1\n+6220 2700 1\n+6216 2700 7\n+6213 2700 2\n+6198 2700 1\n+5994 2700 1\n+5984 2700 1\n+5958 2700 1\n+5948 2700 4\n+5871 2700 2\n+5834 2700 1\n+5831 2700 1\n+5773 2700 1\n+5714 2700 1\n+5705 2700 15\n+5702 2700 1\n+5699 2700 4\n+5635 2700 1\n+5595 2700 12\n+5576 2700 1\n+5563 2700 1\n+5549 2700 1\n+5522 2700 16\n+5500 2700 1\n+5492 2700 1\n+5357 2700 1\n+5238 2700 7\n+5234 2700 2\n+5215 2700 1\n+5199 2700 1\n+5183 2700 1\n+5135 2700 1\n+5098 2700 1\n+5090 2700 2\n+5069 2700 2\n+5038 2700 1\n+4979 2700 6\n+4959 2700 1\n+4897 2700 1\n+4892 2700 2\n+4889 2700 1\n+4882 2700 1\n+4848 2700 1\n+4837 2700 1\n+4757 2700 1\n+4700 2700 1\n+4682 2700 1\n+4664 2700 1\n+4623 2700 1\n+4607 2700 1\n+4582 2700 1\n+4566 2700 1\n+4493 2700 1\n+4434 2700 1\n+4400 2700 1\n+4335 2700 2\n+4322 2700 1\n+4256 2700 1\n+4172 2700 12\n+4060 2700 1\n+4050 2700 1\n+4040 2700 1\n+4028 2700 18\n+3997 2700 1\n+3964 2700 1\n+3949 2700 1\n+3888 2700 1\n+3865 2700 1\n+3816 2700 1\n+3762 2700 12\n+3714 2700 1\n+3700 2700 1\n+3668 2700 2\n+3634 2700 1\n+3579 2700 1\n+3560 2700 1\n+3518 2700 1\n+3498 2700 2\n+3458 2700 1\n+3447 2700 1\n+3403 2700 1\n+3327 2700 1\n+3326 2700 1\n+3279 2700 1\n+3256 2700 5\n+3206 2700 1\n+2940 2700 1\n+2916 2700 1\n+2906 2700 2\n+2813 2700 1\n+2727 2700 1\n+2663 2700 1\n+2655 2700 1\n+2574 2700 1\n+2485 2700 1\n+2374 2700 1\n+2334 2700 1\n+2301 2700 2\n+2208 2700 1\n+2198 2700 4\n+2074 2700 1\n+2062 2700 1\n+1990 2700 20\n+1984 2700 1\n+1965 2700 4\n+1963 2700 1\n+1956 2700 1\n+1901 2700 2\n+1846 2700 2\n+1842 2700 1\n+1724 2700 1\n+1723 2700 4\n+1612 2700 1\n+1563 2700 1\n+1547 2700 1\n+1363 2700 9\n+1314 2700 1\n+1288 2700 1\n+1202 2700 1\n+1185 2700 1\n+1110 2700 7\n+1011 2700 1\n+925 2700 2\n+909 2700 9\n+860 2700 2\n+757 2700 1\n+710 2700 1\n+688 2700 1\n+687 2700 1\n+679 2700 2\n+589 2700 1\n+559 2700 3\n+518 2700 1\n+493 2700 19\n+465 2700 1\n+458 2700 1\n+416 2700 2\n+413 2700 2\n+179 2700 2\n+167 2700 4\n+122 2700 1\n+121 2700 1\n+82 2700 1\n' |
| b |
| diff -r 000000000000 -r 2fd982fab98a test-data/outliers_file.txt --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/outliers_file.txt Wed Apr 03 11:46:02 2019 -0400 |
| b |
| @@ -0,0 +1,28 @@ +AAGCACTGGTTCTT-1,6157 +AAGCCATGAACTGC-1,7070 +ACCCGTTGCTTCTA-1,6092 +ACGAACTGGCTATG-1,8931 +ACGAAGCTCTGAGT-1,7067 +ACGAGGGACAGGAG-1,7935 +AGAGGTCTACAGCT-1,10783 +ATACCGGAATGCTG-1,6582 +CAGGTTGAGGATCT-1,8015 +CATACTTGGGTTAC-1,7171 +CCAGTCTGCGGAGA-1,15844 +CGATACGACAGGAG-1,6733 +CGATCAGATGTGAC-1,6916 +GAAAGTGAAAGTGA-1,6177 +GACATTCTCCACCT-1,6193 +GAGCATACTTTGCT-1,6694 +GCCTCAACTCTTTG-1,5990 +GCGAAGGAGAGCTT-1,10282 +GCGTAAACACGGTT-1,5928 +GGCACGTGTGAGAA-1,10359 +GGGCCAACCTTGGA-1,8424 +GTGATGACAAGTGA-1,6333 +GTTAACCTTGCTTT-1,6102 +TGCAATCTTCAGGT-1,6317 +TGTAGGTGCTCTAT-1,6287 +TTACTCGAACGTTG-1,15301 +TTATGGCTTATGGC-1,6165 +TTGAGGACTACGCA-1,6344 |