| Previous changeset 8:ae1e5d9d8972 (2021-02-19) Next changeset 10:55e35e9203cf (2022-05-07) |
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Commit message:
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/anndata/ commit 53df027ff1c3c3f580b2cc356887b0c8cce82a94" |
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modified:
import.xml |
| b |
| diff -r ae1e5d9d8972 -r 499059586799 import.xml --- a/import.xml Fri Feb 19 23:53:04 2021 +0000 +++ b/import.xml Thu Sep 23 18:24:58 2021 +0000 |
| b |
| @@ -34,7 +34,8 @@ #end if && #else if $hd5_format.in.adata_format == 'umi_tools' - gzip '$hd5_format.in.input' + ## avoid gzipping in the inputdir + gzip -c '$hd5_format.in.input' > umi_tools_input.gz && #end if @@ -95,7 +96,7 @@ #end if #else if $hd5_format.in.adata_format == 'umi_tools' -adata = ad.read_umi_tools('${hd5_format.in.input}.gz') +adata = ad.read_umi_tools('umi_tools_input.gz') #end if adata.write('anndata.h5ad') #end if |