Repository 'rgi'
hg clone https://toolshed.g2.bx.psu.edu/repos/card/rgi

Changeset 1:f96cbb663aa9 (2020-02-28)
Previous changeset 0:715bc9aeef69 (2019-02-27) Next changeset 2:a671367c326e (2020-11-17)
Commit message:
planemo upload for repository https://github.com/arpcard/rgi commit 09a75bd2d655c05892acf7585a7ed08548f1c86d
modified:
data_managers/data_manager_rgi_build_db/data_manager/rgi_database_builder.xml
rgi.xml
b
diff -r 715bc9aeef69 -r f96cbb663aa9 data_managers/data_manager_rgi_build_db/data_manager/rgi_database_builder.xml
--- a/data_managers/data_manager_rgi_build_db/data_manager/rgi_database_builder.xml Wed Feb 27 09:08:21 2019 -0500
+++ b/data_managers/data_manager_rgi_build_db/data_manager/rgi_database_builder.xml Fri Feb 28 13:38:11 2020 -0500
b
@@ -2,7 +2,7 @@
 <tool id="rgi_database_builder" name="RGI Database Builder" tool_type="manage_data" version="1.0.0">
     <description>Download and build the CARD database for RGI</description>
     <requirements>
- <requirement type="package" version="4.2.2">rgi</requirement>
+ <requirement type="package" version="5.1.0">rgi</requirement>
     </requirements>
     <stdio>
         <exit_code description="Error" level="fatal" range="1:" />
b
diff -r 715bc9aeef69 -r f96cbb663aa9 rgi.xml
--- a/rgi.xml Wed Feb 27 09:08:21 2019 -0500
+++ b/rgi.xml Fri Feb 28 13:38:11 2020 -0500
[
@@ -1,12 +1,12 @@
-<tool id="rgi" name="Resistance Gene Identifier (RGI)" version="4.2.2">
+<tool id="rgi" name="Resistance Gene Identifier (RGI)" version="5.1.0">
     <description>This tool predicts resistome(s) from protein or nucleotide data based on homology and SNP models.</description>
     <requirements>
-        <requirement type="package" version="4.2.2">rgi</requirement>
+        <requirement type="package" version="5.1.0">rgi</requirement>
     </requirements>
     <stdio>
         <exit_code range="1:" />
     </stdio>
-    <command><![CDATA[
+    <command detect_errors="aggressive"><![CDATA[
 #if $db_opts.db_opts_selector != "default":
     rgi load
         #if $db_opts.db_opts_selector == "local":