| Previous changeset 4:88d66f3b47e0 (2018-04-23) Next changeset 6:34e1fbd32a04 (2018-08-03) |
|
Commit message:
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mothur commit 68e35d5f24a9219e5583ede7d38a78fa976f7dbb |
|
modified:
sub.sample.xml |
| b |
| diff -r 88d66f3b47e0 -r 2986f7b01e74 sub.sample.xml --- a/sub.sample.xml Mon Apr 23 10:01:23 2018 -0400 +++ b/sub.sample.xml Sat Jul 14 23:11:05 2018 -0400 |
| [ |
| @@ -174,6 +174,9 @@ <data name="group_out" format="mothur.groups" from_work_dir="input_use_group_group_in*.subsample.*" label="${tool.name} on ${on_string}: subsample.groups"> <filter>(input['format'] == 'fasta' or input['format'] == 'list') and input['use_group']['to_filter'] == 'yes'</filter> </data> + <data name="count_out" format="mothur.count_table" from_work_dir="count.subsample.*" label="${tool.name} on ${on_string}: subsample.count"> + <filter>count</filter> + </data> </outputs> <tests> <test><!-- test with list --> @@ -292,6 +295,19 @@ <param name="savelog" value="true"/> <expand macro="logfile-test"/> </test> + <test><!-- test with count file --> + <param name="format" value="fasta"/> + <param name="otu" value="amazon.unique.fasta" ftype="fasta"/> + <param name="count" value="amazon.count_table" ftype="mothur.count_table"/> + <output name="count_out" ftype="mothur.count_table"> + <assert_contents> + <expand macro="test-count-format"/> + <has_line_matching expression="^U\d+\t\d$"/> + </assert_contents> + </output> + <param name="savelog" value="true"/> + <expand macro="logfile-test"/> + </test> </tests> <help><![CDATA[ |