| Previous changeset 8:3437d5a5041c (2016-09-23) Next changeset 10:c84d44519b2e (2017-04-04) |
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Commit message:
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stringtie commit 65beed7b9259920d3fdb293a1c7060860bd83594 |
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modified:
stringtie_merge.xml |
| b |
| diff -r 3437d5a5041c -r 1f23fc7df25c stringtie_merge.xml --- a/stringtie_merge.xml Fri Sep 23 12:18:11 2016 -0400 +++ b/stringtie_merge.xml Tue Mar 21 03:07:22 2017 -0400 |
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| @@ -10,7 +10,7 @@ <![CDATA[ stringtie --merge -p \${GALAXY_SLOTS:-1} - #if str($guide_gff) != "": + #if $guide_gff: -G "$guide_gff" #end if -m $min_len @@ -25,7 +25,7 @@ ]]> </command> <inputs> - <param type="data" name="input_gtf" multiple="true" format="gtf,gff3" /> + <param type="data" name="input_gtf" multiple="True" format="gtf,gff3" /> <param type="data" name="guide_gff" optional="True" format="gtf,gff3" /> <param argument="-m" type="integer" name="min_len" value="50" help="Minimum input transcript length to include in the merge" /> <param argument="-c" type="integer" name="min_cov" value="0" help="Minimum input transcript coverage to include in the merge" /> @@ -49,6 +49,14 @@ <param ftype="gtf" name="guide_gff" value="stringtie_merge_in3.gtf" /> <output file="stringtie_merge_out2.gtf" ftype="gtf" lines_diff="2" name="out_gtf" /> </test> + <test> + <param ftype="gtf" name="input_gtf" value="stringtie_merge_in1.gtf,stringtie_merge_in2.gtf" /> + <output ftype="gtf" name="out_gtf"> + <assert_contents> + <has_text text="stringtie --merge" /> + </assert_contents> + </output> + </test> </tests> <help><![CDATA[ |