| Next changeset 1:fb6b6d5e6bd5 (2025-02-10) |
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Commit message:
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/fastk commit 56658d5048382715413718dd2d41c9751e886608 |
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added:
logex.xml macros.xml test-data/fastk_in1.tar test-data/fastk_in2.tar test-data/fastq1.ktab test-data/fastq2.ktab test-data/input01.fasta.gz test-data/test01.hist test-data/test02.hist test-data/test02.tabex.txt test-data/test03.hist test-data/test03.tabex.txt |
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| diff -r 000000000000 -r 73ddd200456a logex.xml --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/logex.xml Tue Jan 07 13:40:30 2025 +0000 |
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| @@ -0,0 +1,92 @@ +<tool id="fastk_logex" name="FastK Logex" version="@TOOL_VERSION@+galaxy@VERSION_SUFFIX@" profile="23.2" license="MIT"> + <description>Performs binary operations on the generated Ktab files from FASTK suite</description> + <macros> + <import>macros.xml</import> + </macros> + <expand macro="requirements"/> + <command detect_errors="exit_code"><![CDATA[ + mkdir -p logex_ktabs + && mkdir -p input_files + && cp '$input_ktab1' input_files/input1.ktab + && ln -s '$input_ktab1_tar' input1.tar + && tar -xf input1.tar + && mv ktabfiles ktabfiles_in1 + && mv "\$(find ktabfiles_in1 -type f -name '*.ktab.1')" "ktabfiles_in1/.input1.ktab.1" + && cp '$input_ktab2' input_files/input2.ktab + && ln -s '$input_ktab2_tar' input2.tar + && tar -xf input2.tar + && mv ktabfiles ktabfiles_in2 + && mv "\$(find ktabfiles_in2 -type f -name '*.ktab.1')" "ktabfiles_in2/.input2.ktab.1" + && mv ktabfiles_in1/.input1.ktab.1 input_files/ + && mv ktabfiles_in2/.input2.ktab.1 input_files/ && + #if $operation_selector == 'and': + Logex -T\${GALAXY_SLOTS:-8} -h 'out = A&.B' input_files/input1.ktab input_files/input2.ktab + #elif $operation_selector == 'or': + Logex -T\${GALAXY_SLOTS:-8} -h 'out = A|.B' input_files/input1.ktab input_files/input2.ktab + #elif $operation_selector == 'minus': + Logex -T\${GALAXY_SLOTS:-8} -h 'out = A-B' input_files/input1.ktab input_files/input2.ktab + #elif $operation_selector == 'xor': + Logex -T\${GALAXY_SLOTS:-8} -h 'out = A^B' input_files/input1.ktab input_files/input2.ktab + #elif $operation_selector == 'unionsum': + Logex -T\${GALAXY_SLOTS:-8} -h 'out = A&+B' input_files/input1.ktab input_files/input2.ktab + #end if + && cp *.ktab logex_ktabs/ + && cp .*.ktab* logex_ktabs/ + && tar -cf logex_ktab.tar input_files/ logex_ktabs/ + ]]></command> + <inputs> + <param name="input_ktab1" type="data" format="fastk_ktab" label="Input FastK ktab file (first)"/> + <param name="input_ktab1_tar" type="data" format="fastk_ktab" label="Associated FastK TAR file consisting of intermediate .ktab files"/> + <param name="input_ktab2" type="data" format="fastk_ktab" label="Input FastK ktab file (second)"/> + <param name="input_ktab2_tar" type="data" format="fastk_ktab" label="Associated FastK TAR file consisting of intermediate .ktab files"/> + <param name="operation_selector" type="select" label="Select Operation to Perform" help="Select the operation to be performed on the input ktab files."> + <option value="and">AND</option> + <option value="or">OR</option> + <option value="minus">Minus</option> + <option value="unionsum">Unionsum</option> + <option value="xor">XOR</option> + </param> + </inputs> + <outputs> + <data name="fastk_hist_out" format="fastk_hist" from_work_dir="out.hist" label="${tool.name} on ${on_string}: Logex .hist file"/> + <data name="fastk_ktab_out" format="fastk_ktab" from_work_dir="out.ktab" label="${tool.name} on ${on_string}: Logex .ktab file"/> + <data name="fastk_ktab_files" format="tar" from_work_dir="logex_ktab.tar" label="${tool.name} on ${on_string}: FastK Logex ktab files"/> + </outputs> + <tests> + <test expect_num_outputs="3"> + <param name="input_ktab1" value="fastq1.ktab"/> + <param name="input_ktab1_tar" value="fastk_in1.tar"/> + <param name="input_ktab2" value="fastq2.ktab"/> + <param name="input_ktab2_tar" value="fastk_in2.tar"/> + <param name="operation_selector" value="AND"/> + <output name="fastk_hist_out" ftype="fastk_hist"> + <assert_contents> + <has_size value="262164"/> + </assert_contents> + </output> + <output name="fastk_ktab_out" ftype="fastk_ktab"> + <assert_contents> + <has_size value="2064"/> + </assert_contents> + </output> + <output name="fastk_ktab_files" ftype="tar"> + <assert_contents> + <has_archive_member path="logex_ktabs/out.ktab"/> + <has_archive_member path="logex_ktabs/.out.ktab.1"/> + <has_archive_member path="input_files/input1.ktab"/> + <has_archive_member path="input_files/.input1.ktab.1"/> + <has_archive_member path="input_files/input2.ktab"/> + <has_archive_member path="input_files/.input2.ktab.1"/> + </assert_contents> + </output> + </test> + </tests> + <help><![CDATA[ + + Logex tool can perform operations such as AND, OR, XOR, Minus and Unionsum on the input given input Ktab files. + + The tool requires two input Ktab files and their associated files (Generated in the tarball of FASTK tool with .1 extension) as inputs to perform various binary operations. + + ]]></help> + <expand macro="citations"/> +</tool> \ No newline at end of file |
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| diff -r 000000000000 -r 73ddd200456a macros.xml --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/macros.xml Tue Jan 07 13:40:30 2025 +0000 |
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| @@ -0,0 +1,26 @@ +<macros> + <token name="@TOOL_VERSION@">1.1.0</token> + <token name="@VERSION_SUFFIX@">1</token> + <xrefs> + <xref type="bio.tools">fastk</xref> + </xrefs> + <xml name="requirements"> + <requirements> + <requirement type="package" version="@TOOL_VERSION@">fastk</requirement> + </requirements> + </xml> + <xml name="citations"> + <citations> + <citation type="bibtex"> + @misc{github, + author = {Gene Meyers}, + year = {2020}, + title = {FastK}, + publisher = {GitHub}, + journal = {GitHub repository}, + url = {https://github.com/thegenemyers/FASTK}, + } + </citation> + </citations> + </xml> +</macros> |
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| diff -r 000000000000 -r 73ddd200456a test-data/fastk_in1.tar |
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| diff -r 000000000000 -r 73ddd200456a test-data/test02.tabex.txt --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/test02.tabex.txt Tue Jan 07 13:40:30 2025 +0000 |
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| b'@@ -0,0 +1,311 @@\n+Opening 40-mer table with 502,597 entries\n+ 1348: aaaaacgaaaccgttgttgaaatccctggaaagctggttg = 5\n+ 3497: aaaacatcttctgcaattccacgaaggcgctctcccattc = 6\n+ 4142: aaaacgaaaccgttgttgaaatccctggaaagctggttgc = 5\n+ 8271: aaaattagccaccatgccgcgcatctcacacccgcgcatg = 5\n+ 9568: aaacaggagaaagactatccccagtaacatcatgcccgta = 5\n+ 9898: aaacatcttctgcaattccacgaaggcgctctcccattcg = 6\n+ 11316: aaaccgttgttgaaatccctggaaagctggttgcgtgaaa = 5\n+ 11609: aaacgaaaccgttgttgaaatccctggaaagctggttgcg = 5\n+ 14677: aaagactatccccagtaacatcatgcccgtattccctgcc = 5\n+ 23585: aaattagccaccatgccgcgcatctcacacccgcgcatgc = 5\n+ 25526: aacaacggtttcgtttttcgctgacgttcagcaagccgct = 5\n+ 27763: aacaggagaaagactatccccagtaacatcatgcccgtat = 5\n+ 28631: aacatcatgcccgtattccctgccagctttaacacgtccc = 6\n+ 30223: aaccagctttccagggatttcaacaacggtttcgtttttc = 5\n+ 30777: aacccaccacggatatccgtaaggacagatgcagcaagtg = 5\n+ 32167: aaccggaaagacacgacaaagcgccactggcagcagccat = 5\n+ 32813: aaccgttgttgaaatccctggaaagctggttgcgtgaaaa = 5\n+ 33721: aacgaaaccgttgttgaaatccctggaaagctggttgcgt = 5\n+ 34290: aacgagcgggtcatgcagttgagtcagcaggtgcagcact = 5\n+ 35527: aacgcgatgctgaacgagcgggtcatgcagttgagtcagc = 7\n+ 36570: aacggcatctttagtttgcacgataaccatatcttcaatt = 5\n+ 36923: aacgggacaacgcgatgctgaacgagcgggtcatgcagtt = 7\n+ 37484: aacggtttcgtttttcgctgacgttcagcaagccgctgct = 5\n+ 37751: aacgtcagcgaaaaacgaaaccgttgttgaaatccctgga = 5\n+ 39094: aactcaggttttactgagttacttaatcgcgtagaagcct = 5\n+ 42359: aagaacggcatctttagtttgcacgataaccatatcttca = 5\n+ 44118: aagaggcgatgatgcagcacaggagggacgtgttaaagct = 5\n+ 45106: aagatgttttcgcttacgcaacgggacaacgcgatgctga = 6\n+ 46997: aagccgctgctctgccggcattccccttatatccgcctct = 7\n+ 47380: aagcgaaaacatcttctgcaattccacgaaggcgctctcc = 6\n+ 50897: aaggcttctacgcgattaagtaactcagtaaaacctgagt = 5\n+ 51296: aaggggaatgccggcagagcagcggcttgctgaacgtcag = 6\n+ 52678: aagtaccgttgcaccttcccggttacgctccctccccaga = 5\n+ 53910: aagtgctgcacctgctgactcaactgcatgacccgctcgt = 5\n+ 57240: aatacgggcatgatgttactggggatagtctttctcctgt = 5\n+ 65459: aatgccggcagagcagcggcttgctgaacgtcagcgaaaa = 6\n+ 66807: aatggctgctgccagtggcgctttgtcgtgtctttccggt = 5\n+ 66876: aatgggagagcgccttcgtggaattgcagaagatgttttc = 6\n+ 68705: aattagccaccatgccgcgcatctcacacccgcgcatgca = 5\n+ 70117: aattgcagaagatgttttcgcttacgcaacgggacaacgc = 6\n+ 73840: acaacgcgatgctgaacgagcgggtcatgcagttgagtca = 7\n+ 73929: acaacggtttcgtttttcgctgacgttcagcaagccgctg = 5\n+ 79713: acaggagggacgtgttaaagctggcagggaatacgggcat = 7\n+ 81836: acatcatgcccgtattccctgccagctttaacacgtccct = 6\n+ 84684: accaatggctgctgccagtggcgctttgtcgtgtctttcc = 5\n+ 86754: accagctttccagggatttcaacaacggtttcgtttttcg = 5\n+ 87548: accatcaccgcccccggtatcccgctcatgctggcgaacc = 6\n+ 88541: acccaccacggatatccgtaaggacagatgcagcaagtgc = 5\n+ 89933: acccgctcgttcagcatcgcgttgtcccgttgcgtaagcg = 7\n+ 92340: accgcccccggtatcccgctcatgctggcgaacccagaca = 6\n+ 95583: accgttgcaccttcccggttacgctccctccccagaaggt = 5\n+ 95641: accgttgttgaaatccctggaaagctggttgcgtgaaaag = 5\n+ 97042: acctgctgactcaactgcatgacccgctcgttcagcatcg = 7\n+ 98459: acgaaaccgttgttgaaatccctggaaagctggttgcgtg = 5\n+ 101251: acgcaacgggacaacgcgatgctgaacgagcgggtcatgc = 7\n+ 102467: acgccatagaggcggatataaggggaatgccggcagagca = 7\n+ 103655: acgcgatgctgaacgagcgggtcatgcagttgagtcagca = 7\n+ 106812: acggcatctttagtttgcacgataaccatatcttcaattc = 5\n+ 107733: acgggacaacgcgatgctgaacgagcgggtcatgcagttg = 7\n+ 107912: acgggcatgatgttactggggatagtctttctcctgttta = 5\n+ 109184: acggttcaccatgaaccataatatgatttctaagaatacc = 5\n+ 109323: acggtttcgtttttcgctgacgttcagcaagccgctgctc = 5\n+ 109991: acgtcagcgaaaaacgaaaccgttgttgaaatccctggaa = 5\n+ 111273: acgttcagcaagccgctgc'..b'agtcagcaggtgcagcacttga = 5\n+ 397948: gatataaggggaatgccggcagagcagcggcttgctgaac = 7\n+ 402619: gatgttttcgcttacgcaacgggacaacgcgatgctgaac = 6\n+ 402865: gattaccttctggggagggagcgtaaccgggaaggtgcaa = 5\n+ 404021: gatttcaacaacggtttcgtttttcgctgacgttcagcaa = 5\n+ 407354: gcacaggagggacgtgttaaagctggcagggaatacgggc = 7\n+ 409109: gcagagcagcggcttgctgaacgtcagcgaaaaacgaaac = 5\n+ 412106: gcatctttagtttgcacgataaccatatcttcaattccaa = 5\n+ 412209: gcatgatgttactggggatagtctttctcctgtttaccgc = 5\n+ 413124: gccaaaattagccaccatgccgcgcatctcacacccgcgc = 5\n+ 413965: gccactcgcggtaaacaggagaaagactatccccagtaac = 5\n+ 415288: gccatagaggcggatataaggggaatgccggcagagcagc = 7\n+ 416467: gcccccggtatcccgctcatgctggcgaacccagacacgc = 6\n+ 421338: gccttcgtggaattgcagaagatgttttcgcttacgcaac = 6\n+ 421606: gcgaaaacatcttctgcaattccacgaaggcgctctccca = 6\n+ 425114: gcgccttcgtggaattgcagaagatgttttcgcttacgca = 6\n+ 428102: gcgggtcatgcagttgagtcagcaggtgcagcacttgagc = 5\n+ 432431: gctcgttcagcatcgcgttgtcccgttgcgtaagcgaaaa = 7\n+ 432544: gctctgccggcattccccttatatccgcctctatggcgta = 7\n+ 432796: gctgaacgtcagcgaaaaacgaaaccgttgttgaaatccc = 5\n+ 435138: gctgttacttcccgctctaaagtagaagtaacatgaatca = 5\n+ 435931: gcttctacgcgattaagtaactcagtaaaacctgagttaa = 5\n+ 436168: gcttgctgaacgtcagcgaaaaacgaaaccgttgttgaaa = 5\n+ 436476: gctttccagggatttcaacaacggtttcgtttttcgctga = 5\n+ 438332: ggaatgccggcagagcagcggcttgctgaacgtcagcgaa = 6\n+ 438435: ggaattgcagaagatgttttcgcttacgcaacgggacaac = 6\n+ 439017: ggacgtgttaaagctggcagggaatacgggcatgatgtta = 5\n+ 439212: ggagaaagactatccccagtaacatcatgcccgtattccc = 5\n+ 440307: ggatataaggggaatgccggcagagcagcggcttgctgaa = 7\n+ 441337: ggatttcaacaacggtttcgtttttcgctgacgttcagca = 5\n+ 442536: ggcagagcagcggcttgctgaacgtcagcgaaaaacgaaa = 6\n+ 443224: ggcatctttagtttgcacgataaccatatcttcaattcca = 5\n+ 444964: ggcgatgatgcagcacaggagggacgtgttaaagctggca = 5\n+ 447754: ggcttctacgcgattaagtaactcagtaaaacctgagtta = 5\n+ 447808: ggcttgctgaacgtcagcgaaaaacgaaaccgttgttgaa = 5\n+ 448268: gggaatgccggcagagcagcggcttgctgaacgtcagcga = 6\n+ 449217: gggcatgatgttactggggatagtctttctcctgtttacc = 5\n+ 451194: gggtcatgcagttgagtcagcaggtgcagcacttgagcga = 5\n+ 455477: ggttcaccatgaaccataatatgatttctaagaataccaa = 5\n+ 459621: gtattccctgccagctttaacacgtccctcctgtgctgca = 6\n+ 459664: gtattcttagaaatcatattatggttcatggtgaaccgta = 5\n+ 464117: gtgagagcgctgttacttcccgctctaaagtagaagtaac = 5\n+ 465705: gtggaattgcagaagatgttttcgcttacgcaacgggaca = 6\n+ 470168: gttgtacgccatagaggcggatataaggggaatgccggca = 5\n+ 471622: gtttttcgctgacgttcagcaagccgctgctctgccggca = 6\n+ 474188: taaggggaatgccggcagagcagcggcttgctgaacgtca = 6\n+ 477666: tactttagagcgggaagtaacagcgctctcacttacaaaa = 5\n+ 481177: tattcttagaaatcatattatggttcatggtgaaccgtaa = 5\n+ 482917: tcaccgcccccggtatcccgctcatgctggcgaacccaga = 6\n+ 484763: tcatcttttcacgcaaccagctttccagggatttcaacaa = 5\n+ 486368: tcccgttgcgtaagcgaaaacatcttctgcaattccacga = 6\n+ 488979: tcgcgttgtcccgttgcgtaagcgaaaacatcttctgcaa = 6\n+ 490132: tcgttcagcatcgcgttgtcccgttgcgtaagcgaaaaca = 7\n+ 490368: tctactttagagcgggaagtaacagcgctctcacttacaa = 5\n+ 491019: tctgccggcattccccttatatccgcctctatggcgtaca = 7\n+ 491604: tcttcatcttttcacgcaaccagctttccagggatttcaa = 5\n+ 492432: tgaacgagcgggtcatgcagttgagtcagcaggtgcagca = 5\n+ 492674: tgaagtaccgttgcaccttcccggttacgctccctcccca = 5\n+ 493518: tgagagcgctgttacttcccgctctaaagtagaagtaaca = 5\n+ 494230: tgatgcagcacaggagggacgtgttaaagctggcagggaa = 5\n+ 494813: tgcacctgctgactcaactgcatgacccgctcgttcagca = 7\n+ 495175: tgcatttacggttcaccatgaaccataatatgatttctaa = 5\n+ 497093: tggaattgcagaagatgttttcgcttacgcaacgggacaa = 6\n+ 498688: tgtaagtgagagcgctgttacttcccgctctaaagtagaa = 5\n+ 499514: tgttgaaatccctggaaagctggttgcgtgaaaagatgaa = 5\n' |
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| diff -r 000000000000 -r 73ddd200456a test-data/test03.hist |
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| diff -r 000000000000 -r 73ddd200456a test-data/test03.tabex.txt --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/test03.tabex.txt Tue Jan 07 13:40:30 2025 +0000 |
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| b'@@ -0,0 +1,311 @@\n+Opening 40-mer table with 310 entries occuring 5-or-more times\n+ 0: aaaaacgaaaccgttgttgaaatccctggaaagctggttg = 5\n+ 1: aaaacatcttctgcaattccacgaaggcgctctcccattc = 6\n+ 2: aaaacgaaaccgttgttgaaatccctggaaagctggttgc = 5\n+ 3: aaaattagccaccatgccgcgcatctcacacccgcgcatg = 5\n+ 4: aaacaggagaaagactatccccagtaacatcatgcccgta = 5\n+ 5: aaacatcttctgcaattccacgaaggcgctctcccattcg = 6\n+ 6: aaaccgttgttgaaatccctggaaagctggttgcgtgaaa = 5\n+ 7: aaacgaaaccgttgttgaaatccctggaaagctggttgcg = 5\n+ 8: aaagactatccccagtaacatcatgcccgtattccctgcc = 5\n+ 9: aaattagccaccatgccgcgcatctcacacccgcgcatgc = 5\n+ 10: aacaacggtttcgtttttcgctgacgttcagcaagccgct = 5\n+ 11: aacaggagaaagactatccccagtaacatcatgcccgtat = 5\n+ 12: aacatcatgcccgtattccctgccagctttaacacgtccc = 6\n+ 13: aaccagctttccagggatttcaacaacggtttcgtttttc = 5\n+ 14: aacccaccacggatatccgtaaggacagatgcagcaagtg = 5\n+ 15: aaccggaaagacacgacaaagcgccactggcagcagccat = 5\n+ 16: aaccgttgttgaaatccctggaaagctggttgcgtgaaaa = 5\n+ 17: aacgaaaccgttgttgaaatccctggaaagctggttgcgt = 5\n+ 18: aacgagcgggtcatgcagttgagtcagcaggtgcagcact = 5\n+ 19: aacgcgatgctgaacgagcgggtcatgcagttgagtcagc = 7\n+ 20: aacggcatctttagtttgcacgataaccatatcttcaatt = 5\n+ 21: aacgggacaacgcgatgctgaacgagcgggtcatgcagtt = 7\n+ 22: aacggtttcgtttttcgctgacgttcagcaagccgctgct = 5\n+ 23: aacgtcagcgaaaaacgaaaccgttgttgaaatccctgga = 5\n+ 24: aactcaggttttactgagttacttaatcgcgtagaagcct = 5\n+ 25: aagaacggcatctttagtttgcacgataaccatatcttca = 5\n+ 26: aagaggcgatgatgcagcacaggagggacgtgttaaagct = 5\n+ 27: aagatgttttcgcttacgcaacgggacaacgcgatgctga = 6\n+ 28: aagccgctgctctgccggcattccccttatatccgcctct = 7\n+ 29: aagcgaaaacatcttctgcaattccacgaaggcgctctcc = 6\n+ 30: aaggcttctacgcgattaagtaactcagtaaaacctgagt = 5\n+ 31: aaggggaatgccggcagagcagcggcttgctgaacgtcag = 6\n+ 32: aagtaccgttgcaccttcccggttacgctccctccccaga = 5\n+ 33: aagtgctgcacctgctgactcaactgcatgacccgctcgt = 5\n+ 34: aatacgggcatgatgttactggggatagtctttctcctgt = 5\n+ 35: aatgccggcagagcagcggcttgctgaacgtcagcgaaaa = 6\n+ 36: aatggctgctgccagtggcgctttgtcgtgtctttccggt = 5\n+ 37: aatgggagagcgccttcgtggaattgcagaagatgttttc = 6\n+ 38: aattagccaccatgccgcgcatctcacacccgcgcatgca = 5\n+ 39: aattgcagaagatgttttcgcttacgcaacgggacaacgc = 6\n+ 40: acaacgcgatgctgaacgagcgggtcatgcagttgagtca = 7\n+ 41: acaacggtttcgtttttcgctgacgttcagcaagccgctg = 5\n+ 42: acaggagggacgtgttaaagctggcagggaatacgggcat = 7\n+ 43: acatcatgcccgtattccctgccagctttaacacgtccct = 6\n+ 44: accaatggctgctgccagtggcgctttgtcgtgtctttcc = 5\n+ 45: accagctttccagggatttcaacaacggtttcgtttttcg = 5\n+ 46: accatcaccgcccccggtatcccgctcatgctggcgaacc = 6\n+ 47: acccaccacggatatccgtaaggacagatgcagcaagtgc = 5\n+ 48: acccgctcgttcagcatcgcgttgtcccgttgcgtaagcg = 7\n+ 49: accgcccccggtatcccgctcatgctggcgaacccagaca = 6\n+ 50: accgttgcaccttcccggttacgctccctccccagaaggt = 5\n+ 51: accgttgttgaaatccctggaaagctggttgcgtgaaaag = 5\n+ 52: acctgctgactcaactgcatgacccgctcgttcagcatcg = 7\n+ 53: acgaaaccgttgttgaaatccctggaaagctggttgcgtg = 5\n+ 54: acgcaacgggacaacgcgatgctgaacgagcgggtcatgc = 7\n+ 55: acgccatagaggcggatataaggggaatgccggcagagca = 7\n+ 56: acgcgatgctgaacgagcgggtcatgcagttgagtcagca = 7\n+ 57: acggcatctttagtttgcacgataaccatatcttcaattc = 5\n+ 58: acgggacaacgcgatgctgaacgagcgggtcatgcagttg = 7\n+ 59: acgggcatgatgttactggggatagtctttctcctgttta = 5\n+ 60: acggttcaccatgaaccataatatgatttctaagaatacc = 5\n+ 61: acggtttcgtttttcgctgacgttcagcaagccgctgctc = 5\n+ 62: acgtcagcgaaaaacgaaaccgttgttgaaatccctggaa = 5\n+ 63'..b'agtcagcaggtgcagcacttga = 5\n+ 246: gatataaggggaatgccggcagagcagcggcttgctgaac = 7\n+ 247: gatgttttcgcttacgcaacgggacaacgcgatgctgaac = 6\n+ 248: gattaccttctggggagggagcgtaaccgggaaggtgcaa = 5\n+ 249: gatttcaacaacggtttcgtttttcgctgacgttcagcaa = 5\n+ 250: gcacaggagggacgtgttaaagctggcagggaatacgggc = 7\n+ 251: gcagagcagcggcttgctgaacgtcagcgaaaaacgaaac = 5\n+ 252: gcatctttagtttgcacgataaccatatcttcaattccaa = 5\n+ 253: gcatgatgttactggggatagtctttctcctgtttaccgc = 5\n+ 254: gccaaaattagccaccatgccgcgcatctcacacccgcgc = 5\n+ 255: gccactcgcggtaaacaggagaaagactatccccagtaac = 5\n+ 256: gccatagaggcggatataaggggaatgccggcagagcagc = 7\n+ 257: gcccccggtatcccgctcatgctggcgaacccagacacgc = 6\n+ 258: gccttcgtggaattgcagaagatgttttcgcttacgcaac = 6\n+ 259: gcgaaaacatcttctgcaattccacgaaggcgctctccca = 6\n+ 260: gcgccttcgtggaattgcagaagatgttttcgcttacgca = 6\n+ 261: gcgggtcatgcagttgagtcagcaggtgcagcacttgagc = 5\n+ 262: gctcgttcagcatcgcgttgtcccgttgcgtaagcgaaaa = 7\n+ 263: gctctgccggcattccccttatatccgcctctatggcgta = 7\n+ 264: gctgaacgtcagcgaaaaacgaaaccgttgttgaaatccc = 5\n+ 265: gctgttacttcccgctctaaagtagaagtaacatgaatca = 5\n+ 266: gcttctacgcgattaagtaactcagtaaaacctgagttaa = 5\n+ 267: gcttgctgaacgtcagcgaaaaacgaaaccgttgttgaaa = 5\n+ 268: gctttccagggatttcaacaacggtttcgtttttcgctga = 5\n+ 269: ggaatgccggcagagcagcggcttgctgaacgtcagcgaa = 6\n+ 270: ggaattgcagaagatgttttcgcttacgcaacgggacaac = 6\n+ 271: ggacgtgttaaagctggcagggaatacgggcatgatgtta = 5\n+ 272: ggagaaagactatccccagtaacatcatgcccgtattccc = 5\n+ 273: ggatataaggggaatgccggcagagcagcggcttgctgaa = 7\n+ 274: ggatttcaacaacggtttcgtttttcgctgacgttcagca = 5\n+ 275: ggcagagcagcggcttgctgaacgtcagcgaaaaacgaaa = 6\n+ 276: ggcatctttagtttgcacgataaccatatcttcaattcca = 5\n+ 277: ggcgatgatgcagcacaggagggacgtgttaaagctggca = 5\n+ 278: ggcttctacgcgattaagtaactcagtaaaacctgagtta = 5\n+ 279: ggcttgctgaacgtcagcgaaaaacgaaaccgttgttgaa = 5\n+ 280: gggaatgccggcagagcagcggcttgctgaacgtcagcga = 6\n+ 281: gggcatgatgttactggggatagtctttctcctgtttacc = 5\n+ 282: gggtcatgcagttgagtcagcaggtgcagcacttgagcga = 5\n+ 283: ggttcaccatgaaccataatatgatttctaagaataccaa = 5\n+ 284: gtattccctgccagctttaacacgtccctcctgtgctgca = 6\n+ 285: gtattcttagaaatcatattatggttcatggtgaaccgta = 5\n+ 286: gtgagagcgctgttacttcccgctctaaagtagaagtaac = 5\n+ 287: gtggaattgcagaagatgttttcgcttacgcaacgggaca = 6\n+ 288: gttgtacgccatagaggcggatataaggggaatgccggca = 5\n+ 289: gtttttcgctgacgttcagcaagccgctgctctgccggca = 6\n+ 290: taaggggaatgccggcagagcagcggcttgctgaacgtca = 6\n+ 291: tactttagagcgggaagtaacagcgctctcacttacaaaa = 5\n+ 292: tattcttagaaatcatattatggttcatggtgaaccgtaa = 5\n+ 293: tcaccgcccccggtatcccgctcatgctggcgaacccaga = 6\n+ 294: tcatcttttcacgcaaccagctttccagggatttcaacaa = 5\n+ 295: tcccgttgcgtaagcgaaaacatcttctgcaattccacga = 6\n+ 296: tcgcgttgtcccgttgcgtaagcgaaaacatcttctgcaa = 6\n+ 297: tcgttcagcatcgcgttgtcccgttgcgtaagcgaaaaca = 7\n+ 298: tctactttagagcgggaagtaacagcgctctcacttacaa = 5\n+ 299: tctgccggcattccccttatatccgcctctatggcgtaca = 7\n+ 300: tcttcatcttttcacgcaaccagctttccagggatttcaa = 5\n+ 301: tgaacgagcgggtcatgcagttgagtcagcaggtgcagca = 5\n+ 302: tgaagtaccgttgcaccttcccggttacgctccctcccca = 5\n+ 303: tgagagcgctgttacttcccgctctaaagtagaagtaaca = 5\n+ 304: tgatgcagcacaggagggacgtgttaaagctggcagggaa = 5\n+ 305: tgcacctgctgactcaactgcatgacccgctcgttcagca = 7\n+ 306: tgcatttacggttcaccatgaaccataatatgatttctaa = 5\n+ 307: tggaattgcagaagatgttttcgcttacgcaacgggacaa = 6\n+ 308: tgtaagtgagagcgctgttacttcccgctctaaagtagaa = 5\n+ 309: tgttgaaatccctggaaagctggttgcgtgaaaagatgaa = 5\n' |