Repository 'mirplant2'
hg clone https://toolshed.g2.bx.psu.edu/repos/big-tiandm/mirplant2

Changeset 42:3b9a6381e6bf (2014-10-28)
Previous changeset 41:58b9d9a0d832 (2014-10-28) Next changeset 43:4c0b1a94b882 (2014-10-28)
Commit message:
Uploaded
modified:
tool_dependencies.xml
b
diff -r 58b9d9a0d832 -r 3b9a6381e6bf tool_dependencies.xml
--- a/tool_dependencies.xml Tue Oct 28 01:33:17 2014 -0400
+++ b/tool_dependencies.xml Tue Oct 28 01:35:17 2014 -0400
b
@@ -1,10 +1,10 @@
 <?xml version="1.0"?>
 <tool_dependency>
     <package name="fastx_toolkit" version="0.0.13">
-        <repository changeset_revision="ec66ae4c269b" name="package_fastx_toolkit_0_0_13" owner="devteam" toolshed="http://toolshed.g2.bx.psu.edu" />
+        <repository changeset_revision="ec66ae4c269b" name="package_fastx_toolkit_0_0_13" owner="devteam" toolshed="https://toolshed.g2.bx.psu.edu" />
     </package>
     <package name="bowtie" version="0.12.7">
-        <repository changeset_revision="9f9f38617a98" name="package_bowtie_0_12_7" owner="devteam" toolshed="http://toolshed.g2.bx.psu.edu" />
+        <repository changeset_revision="9f9f38617a98" name="package_bowtie_0_12_7" owner="devteam" toolshed="https://toolshed.g2.bx.psu.edu" />
     </package>
     <set_environment version="1.0">
         <environment_variable action="set_to" name="SCRIPT_PATH">$REPOSITORY_INSTALL_DIR</environment_variable>
@@ -12,17 +12,22 @@
     <package name="R" version="2.11.0">
         <repository changeset_revision="8d0a55bf7aaf" name="package_r_2_11_0" owner="devteam" toolshed="http://toolshed.g2.bx.psu.edu" />
     </package>
- <package name="ViennaRNA" version="2.1.7">
-    <!--install version="1.0">
+
+ <package name="X11" version="1.5.0">
+ <repositoty name="package_libx11_1_5_0" owner="devteam" />
+ </package>
+
+ <package name="ViennaRNA" version="2.1.8">
+    <install version="1.0">
     <actions>
-      <action type="download_by_url">http://www.tbi.univie.ac.at/RNA/packages/source/ViennaRNA-2.1.7.tar.gz</action>
-  <action type="shell_command">./configure</action>
+      <action type="download_by_url">http://www.tbi.univie.ac.at/RNA/packages/source/ViennaRNA-2.1.8.tar.gz</action>
+  <action type="shell_command">./configure --prefix=$INSTALL_DIR </action>
   <action type="shell_command">make</action>
   <action type="shell_command">make install</action>
   <action type="set_environment">
-    <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/bin</environment_variable>
+    <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/bin</environment_variable>
   </action>
     </actions>
-    </install-->
+    </install>
  </package>
 </tool_dependency>