Repository 'data_manager_gemini_database_downloader'
hg clone https://toolshed.g2.bx.psu.edu/repos/iuc/data_manager_gemini_database_downloader

Changeset 6:f57426daa04d (2019-01-11)
Previous changeset 5:b4b2b284230a (2018-12-19) Next changeset 7:5bcf0e24f42c (2020-05-14)
Commit message:
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_gemini_database_downloader commit 62ed732cba355e695181924a8ed4cce49ca21c59
modified:
data_manager/data_manager_gemini_download.py
data_manager/data_manager_gemini_download.xml
b
diff -r b4b2b284230a -r f57426daa04d data_manager/data_manager_gemini_download.py
--- a/data_manager/data_manager_gemini_download.py Wed Dec 19 12:36:22 2018 -0500
+++ b/data_manager/data_manager_gemini_download.py Fri Jan 11 17:33:55 2019 -0500
[
@@ -51,6 +51,19 @@
     config['annotation_dir'] = 'gemini/data'
     write_gemini_config(config, config_file)
 
+    # The name of the database should reflect whether it was built with or
+    # without the optional GERP-bp data, the CADD scores, or both.
+    # This builds up the correpsonding part of the name:
+    anno_extras = []
+    if params['param_dict']['gerp_bp']:
+        anno_extras.append('GERP')
+    if params['param_dict']['cadd']:
+        anno_extras.append('CADD')
+    if anno_extras:
+        anno_desc = ' w/ ' + ' & '.join(anno_extras)
+    else:
+        anno_desc = ''
+
     # Finally, we prepare the metadata for the new data table record ...
     data_manager_dict = {
         'data_tables': {
@@ -60,7 +73,9 @@
                     'dbkey': 'hg19',
                     'version': params['param_dict']['gemini_db_version'],
                     'name':
-                        'GEMINI annotations (%s snapshot)' % today.isoformat(),
+                        'GEMINI annotations%s (%s snapshot)' % (
+                            anno_desc, today.isoformat()
+                    ),
                     'path': './%s' % today.isoformat()
                 }
             ]
b
diff -r b4b2b284230a -r f57426daa04d data_manager/data_manager_gemini_download.xml
--- a/data_manager/data_manager_gemini_download.xml Wed Dec 19 12:36:22 2018 -0500
+++ b/data_manager/data_manager_gemini_download.xml Fri Jan 11 17:33:55 2019 -0500
b
@@ -1,8 +1,8 @@
-<tool id="data_manager_gemini_download" name="GEMINI Download" version="@VERSION@.1" tool_type="manage_data">
+<tool id="data_manager_gemini_download" name="GEMINI Download" version="@VERSION@" tool_type="manage_data">
     <description>the annotation files required by the GEMINI suite of tools</description>
     <macros>
-        <token name="@VERSION@">0.18.1</token>
-        <token name="@DB_VERSION@">181</token>
+        <token name="@VERSION@">0.20.1</token>
+        <token name="@DB_VERSION@">200</token>
     </macros>
     <requirements>
         <requirement type="package" version="@VERSION@">gemini</requirement>