| Previous changeset 7:72be09dfd803 (2019-12-02) Next changeset 9:782564664543 (2020-12-08) |
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Commit message:
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mothur commit ff56a4c9218ddea84ff5cd72fd98c62db212465d" |
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modified:
macros.xml summary.single.xml |
| b |
| diff -r 72be09dfd803 -r 88d39b1679df macros.xml --- a/macros.xml Mon Dec 02 06:22:46 2019 -0500 +++ b/macros.xml Thu Nov 05 23:21:24 2020 +0000 |
| b |
| @@ -15,7 +15,7 @@ <exit_code range="1:" level="fatal"/> </stdio> </xml> - <token name="@SHELL_OPTIONS@">set -o pipefail;</token> + <token name="@SHELL_OPTIONS@">set -o pipefail; export TERM=vt100; </token> <!-- Input parameters --> |
| b |
| diff -r 72be09dfd803 -r 88d39b1679df summary.single.xml --- a/summary.single.xml Mon Dec 02 06:22:46 2019 -0500 +++ b/summary.single.xml Thu Nov 05 23:21:24 2020 +0000 |
| [ |
| @@ -1,4 +1,4 @@ -<tool profile="16.07" id="mothur_summary_single" name="Summary.single" version="@WRAPPER_VERSION@.0"> +<tool profile="16.07" id="mothur_summary_single" name="Summary.single" version="@WRAPPER_VERSION@.2"> <description>Summary of calculator values for OTUs</description> <macros> <import>macros.xml</import> @@ -50,7 +50,7 @@ | mothur | tee mothur.out.log #if $subsample.use == 'yes' and not ($otu.extension == 'mothur.shared' and not $groupmode): - && mv otu.*ave_std.summary otu.ave-std + && mv otu.*ave[_-]std.summary otu.ave-std #end if ]]></command> <inputs> @@ -115,6 +115,13 @@ </collection> </outputs> <tests> + <test><!-- test with shared and subsampling --> + <param name="otu" value="amazon.an.shared" ftype="mothur.shared"/> + <param name="use" value="yes"/> + <output name="summary" md5="eaf5304b383c3c5764193ac7f49589db" ftype="tabular"/> + <param name="savelog" value="true"/> + <expand macro="logfile-test"/> + </test> <test><!-- test with shared and default params --> <param name="otu" value="amazon.an.shared" ftype="mothur.shared"/> <output name="summary" md5="eaf5304b383c3c5764193ac7f49589db" ftype="tabular"/> |