| Previous changeset 17:8b2c1d1556ac (2021-04-07) Next changeset 19:73d2b7a8d94b (2021-12-19) |
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Commit message:
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/chira commit 28963347255f1df6efaa8991ad9fc17f86b30a73" |
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modified:
chira_extract.xml macros.xml |
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| diff -r 8b2c1d1556ac -r e7ee3aadf1a5 chira_extract.xml --- a/chira_extract.xml Wed Apr 07 12:43:02 2021 +0000 +++ b/chira_extract.xml Fri Sep 24 06:49:19 2021 +0000 |
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| @@ -1,5 +1,6 @@ <tool id="chira_extract" name="ChiRA extract" version="@WRAPPER_VERSION@0"> <description>extrat the chimeras</description> + <expand macro="bio_tools"/> <macros> <import>macros.xml</import> </macros> @@ -8,7 +9,9 @@ #set $genomic_fasta = '' #if str($annotation.annot_choice) == "yes": #if str($annotation.fasta_source.fasta_source_selector) == 'history': - #set $genomic_fasta = $annotation.fasta_source.fasta + ## Avoid writing FASTA index to inputdir by symlinking + ln -s '${$annotation.fasta_source.fasta}' genome.fa && + #set $genomic_fasta = 'genome.fa' #else #set $genomic_fasta = $annotation.fasta_source.fasta_id.fields.path #end if |
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| diff -r 8b2c1d1556ac -r e7ee3aadf1a5 macros.xml --- a/macros.xml Wed Apr 07 12:43:02 2021 +0000 +++ b/macros.xml Fri Sep 24 06:49:19 2021 +0000 |
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| @@ -1,6 +1,11 @@ <macros> <token name="@WRAPPER_VERSION@">@TOOL_VERSION@+galaxy</token> <token name="@TOOL_VERSION@">1.4.3</token> + <xml name="bio_tools"> + <xrefs> + <xref type="bio.tools">chira</xref> + </xrefs> + </xml> <xml name="requirements"> <requirements> <requirement type="package" version="@TOOL_VERSION@">chira</requirement> |