| Previous changeset 7:7c4e3703b45a (2019-03-12) Next changeset 9:271c9d5f0d10 (2019-06-03) |
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Commit message:
planemo upload for repository https://github.com/workflow4metabolomics/xcms commit a5136bfc124956893f4f0c91808d1c0d78c4ea01 |
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modified:
lib.r |
| b |
| diff -r 7c4e3703b45a -r f1a287a8509b lib.r --- a/lib.r Tue Mar 12 11:00:37 2019 -0400 +++ b/lib.r Mon Apr 29 06:23:04 2019 -0400 |
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| @@ -333,7 +333,7 @@ files[exists] <- sub("//","/",files[exists]) # WHAT IS ON THE FILESYSTEM - filesystem_filepaths <- system(paste0("find \"$PWD/",directory,"\" -not -name '\\.*' -not -path '*conda-env*' -type f -name \"*\""), intern=T) + filesystem_filepaths <- system(paste0("find \"",getwd(),"/",directory,"\" -not -name '\\.*' -not -path '*conda-env*' -type f -name \"*\""), intern=T) filesystem_filepaths <- filesystem_filepaths[grep(filepattern, filesystem_filepaths, perl=T)] # COMPARISON |