Previous changeset 63:5f210bc9f486 (2015-10-19) Next changeset 66:090709ab81d1 (2015-11-04) |
Commit message:
Minor bug correction. Added casts to str in Galaxy XML files. Also closed the writer in the Python script "changeTagName." |
modified:
SMART/Java/Python/changeTagName.py SMART/galaxy/CompareOverlappingAdapt.xml SMART/galaxy/CompareOverlappingSmallQuery.xml SMART/galaxy/CompareOverlappingSmallRef.xml |
b |
diff -r 5f210bc9f486 -r 783e6ed4eb66 SMART/Java/Python/changeTagName.py --- a/SMART/Java/Python/changeTagName.py Mon Oct 19 12:02:29 2015 +0200 +++ b/SMART/Java/Python/changeTagName.py Mon Oct 19 14:16:44 2015 +0200 |
b |
@@ -83,6 +83,7 @@ parser.transcriptListParser.close() writer.write() + writer.close() if options.mysql: mysqlWriter.write() |
b |
diff -r 5f210bc9f486 -r 783e6ed4eb66 SMART/galaxy/CompareOverlappingAdapt.xml --- a/SMART/galaxy/CompareOverlappingAdapt.xml Mon Oct 19 12:02:29 2015 +0200 +++ b/SMART/galaxy/CompareOverlappingAdapt.xml Mon Oct 19 14:16:44 2015 +0200 |
b |
@@ -8,9 +8,9 @@ #if $OptionDistance.Dist == 'Yes': -d $OptionDistance.distance #end if - #if $OptionCA == 'Collinear': + #if str($OptionCA) == 'Collinear': -c - #elif $OptionCA == 'AntiSense': + #elif str($OptionCA) == 'AntiSense': -a #end if </command> |
b |
diff -r 5f210bc9f486 -r 783e6ed4eb66 SMART/galaxy/CompareOverlappingSmallQuery.xml --- a/SMART/galaxy/CompareOverlappingSmallQuery.xml Mon Oct 19 12:02:29 2015 +0200 +++ b/SMART/galaxy/CompareOverlappingSmallQuery.xml Mon Oct 19 14:16:44 2015 +0200 |
b |
@@ -14,9 +14,9 @@ #if $OptionPcOverlapRef.present == 'Yes': -P $OptionPcOverlapRef.minOverlap #end if - #if $OptionCA == 'Collinear': + #if str($OptionCA) == 'Collinear': -c - #elif $OptionCA == 'AntiSense': + #elif str($OptionCA) == 'AntiSense': -a #end if </command> |
b |
diff -r 5f210bc9f486 -r 783e6ed4eb66 SMART/galaxy/CompareOverlappingSmallRef.xml --- a/SMART/galaxy/CompareOverlappingSmallRef.xml Mon Oct 19 12:02:29 2015 +0200 +++ b/SMART/galaxy/CompareOverlappingSmallRef.xml Mon Oct 19 14:16:44 2015 +0200 |
b |
@@ -14,9 +14,9 @@ #if $OptionPcOverlapRef.present == 'Yes': -P $OptionPcOverlapRef.minOverlap #end if - #if $OptionCA == 'Collinear': + #if str($OptionCA) == 'Collinear': -c - #elif $OptionCA == 'AntiSense': + #elif str($OptionCA) == 'AntiSense': -a #end if </command> |