| Next changeset 1:69a2c1612c5f (2018-10-26) |
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Commit message:
planemo upload |
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added:
prince.xml |
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| diff -r 000000000000 -r b98b3e9da146 prince.xml --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/prince.xml Mon Oct 22 11:10:25 2018 -0400 |
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| @@ -0,0 +1,42 @@ +<tool id="prince" name="VNTR copy number approximation" version="0.1.0"> + <requirements> + <requirement type="package" version="1.0">prince</requirement> + </requirements> + <command detect_errors="exit_code"><![CDATA[ + prince -tf "$input1" -to "$output1" + ]]></command> + <inputs> + <param type="data" name="input1" format="txt" /> + </inputs> + <outputs> + <data name="output1" format="txt" /> + </outputs> + <tests> + <test> + <param name="input1" value="prince_input.txt"/> + <output name="output1" file="prince_output.txt"/> + </test> + </tests> + <help><![CDATA[ + usage: prince [-h] [-bo BOOST_OUTPUT] [-to TARGET_OUTPUT] [-tmp TEMPLATES] + [-tf TARGET_FILE] [-bf BOOSTING_FILE] [-k K] [-cn COPYNUMBER] + + Prince Options. + + optional arguments: + -h, --help show this help message and exit + -bo time + + ]]></help> + <citations> + <citation type="bibtex"> +@misc{githubPythonPRINCE, + author = {LastTODO, FirstTODO}, + year = {TODO}, + title = {PythonPRINCE}, + publisher = {GitHub}, + journal = {GitHub repository}, + url = {https://github.com/WGS-TB/PythonPRINCE}, +}</citation> + </citations> +</tool> |