| Previous changeset 58:84f51c5d69e3 (2019-08-27) Next changeset 60:01acf62d5012 (2019-08-29) |
|
Commit message:
"planemo upload for repository https://github.com/bardin-lab/readtagger/tree/master/galaxy commit 50b330e8472fe70f5bdb13f8d2628bb864005924" |
|
modified:
add_matesequence.xml allow_dovetailing.xml bam_readtagger.xml extract_variants.xml filter_insertions.xml findcluster.xml plot_coverage.xml update_mapq.xml write_supplementary_fastq.xml |
| b |
| diff -r 84f51c5d69e3 -r 13c5f2e30a13 add_matesequence.xml --- a/add_matesequence.xml Tue Aug 27 04:29:07 2019 -0400 +++ b/add_matesequence.xml Wed Aug 28 13:13:40 2019 -0400 |
| [ |
| @@ -1,7 +1,7 @@ -<tool id="add_matesequence" name="Add matesequence" version="0.5.5"> +<tool id="add_matesequence" name="Add matesequence" version="0.5.6"> <description>into tag field</description> <requirements> - <requirement type="package" version="0.5.5">readtagger</requirement> + <requirement type="package" version="0.5.6">readtagger</requirement> </requirements> <version_command>add_matesequence --version</version_command> <command detect_errors="aggressive"><![CDATA[ |
| b |
| diff -r 84f51c5d69e3 -r 13c5f2e30a13 allow_dovetailing.xml --- a/allow_dovetailing.xml Tue Aug 27 04:29:07 2019 -0400 +++ b/allow_dovetailing.xml Wed Aug 28 13:13:40 2019 -0400 |
| [ |
| @@ -1,7 +1,7 @@ -<tool id="allow_dovetailing" name="Allow dovetailing" version="0.5.5"> +<tool id="allow_dovetailing" name="Allow dovetailing" version="0.5.6"> <description>modifies proper_pair flag in bam files</description> <requirements> - <requirement type="package" version="0.5.5">readtagger</requirement> + <requirement type="package" version="0.5.6">readtagger</requirement> </requirements> <command detect_errors="aggressive"><![CDATA[ allow_dovetailing -i '$input' -o '$output' |
| b |
| diff -r 84f51c5d69e3 -r 13c5f2e30a13 bam_readtagger.xml --- a/bam_readtagger.xml Tue Aug 27 04:29:07 2019 -0400 +++ b/bam_readtagger.xml Wed Aug 28 13:13:40 2019 -0400 |
| [ |
| @@ -1,10 +1,10 @@ -<tool id="bam_readtagger" name="Tag alignment files" version="0.5.5"> +<tool id="bam_readtagger" name="Tag alignment files" version="0.5.6"> <description>from multiple bam files</description> <macros> <import>macros.xml</import> </macros> <requirements> - <requirement type="package" version="0.5.5">readtagger</requirement> + <requirement type="package" version="0.5.6">readtagger</requirement> </requirements> <command detect_errors="aggressive"><![CDATA[ readtagger -t '$tag_file' -s |
| b |
| diff -r 84f51c5d69e3 -r 13c5f2e30a13 extract_variants.xml --- a/extract_variants.xml Tue Aug 27 04:29:07 2019 -0400 +++ b/extract_variants.xml Wed Aug 28 13:13:40 2019 -0400 |
| [ |
| @@ -1,7 +1,7 @@ -<tool id="extract_variants" name="Extract variant fragments" version="0.5.5"> +<tool id="extract_variants" name="Extract variant fragments" version="0.5.6"> <description>from long reads</description> <requirements> - <requirement type="package" version="0.5.5">readtagger</requirement> + <requirement type="package" version="0.5.6">readtagger</requirement> </requirements> <version_command>extract_variants --version</version_command> <command detect_errors="aggressive"><![CDATA[ |
| b |
| diff -r 84f51c5d69e3 -r 13c5f2e30a13 filter_insertions.xml --- a/filter_insertions.xml Tue Aug 27 04:29:07 2019 -0400 +++ b/filter_insertions.xml Wed Aug 28 13:13:40 2019 -0400 |
| [ |
| @@ -1,7 +1,7 @@ -<tool id="confirm_insertions" name="Confirm or discard insertions" version="0.5.5"> +<tool id="confirm_insertions" name="Confirm or discard insertions" version="0.5.6"> <description>based on softclips in control files</description> <requirements> - <requirement type="package" version="0.5.5">readtagger</requirement> + <requirement type="package" version="0.5.6">readtagger</requirement> </requirements> <version_command>confirm_insertions --version</version_command> <command detect_errors="aggressive"><![CDATA[ |
| b |
| diff -r 84f51c5d69e3 -r 13c5f2e30a13 findcluster.xml --- a/findcluster.xml Tue Aug 27 04:29:07 2019 -0400 +++ b/findcluster.xml Wed Aug 28 13:13:40 2019 -0400 |
| [ |
| @@ -1,10 +1,10 @@ -<tool id="findcluster" name="Find clusters of reads" version="0.5.5"> +<tool id="findcluster" name="Find clusters of reads" version="0.5.6"> <description>in bam files</description> <macros> <import>macros.xml</import> </macros> <requirements> - <requirement type="package" version="0.5.5">readtagger</requirement> + <requirement type="package" version="0.5.6">readtagger</requirement> </requirements> <version_command>findcluster --version</version_command> <command detect_errors="aggressive"><![CDATA[ |
| b |
| diff -r 84f51c5d69e3 -r 13c5f2e30a13 plot_coverage.xml --- a/plot_coverage.xml Tue Aug 27 04:29:07 2019 -0400 +++ b/plot_coverage.xml Wed Aug 28 13:13:40 2019 -0400 |
| [ |
| @@ -1,7 +1,7 @@ -<tool id="plot_coverage" name="Plot coverage" version="0.5.5"> +<tool id="plot_coverage" name="Plot coverage" version="0.5.6"> <description>as area plot between BAM files</description> <requirements> - <requirement type="package" version="0.5.5">readtagger</requirement> + <requirement type="package" version="0.5.6">readtagger</requirement> </requirements> <command detect_errors="aggressive"><![CDATA[ #import re |
| b |
| diff -r 84f51c5d69e3 -r 13c5f2e30a13 update_mapq.xml --- a/update_mapq.xml Tue Aug 27 04:29:07 2019 -0400 +++ b/update_mapq.xml Wed Aug 28 13:13:40 2019 -0400 |
| [ |
| @@ -1,7 +1,7 @@ -<tool id="update_mapq" name="Update MAPQ score" version="0.5.5"> +<tool id="update_mapq" name="Update MAPQ score" version="0.5.6"> <description>of supplementary alignments</description> <requirements> - <requirement type="package" version="0.5.5">readtagger</requirement> + <requirement type="package" version="0.5.6">readtagger</requirement> </requirements> <version_command>update_mapq --version</version_command> <command detect_errors="aggressive"><![CDATA[ |
| b |
| diff -r 84f51c5d69e3 -r 13c5f2e30a13 write_supplementary_fastq.xml --- a/write_supplementary_fastq.xml Tue Aug 27 04:29:07 2019 -0400 +++ b/write_supplementary_fastq.xml Wed Aug 28 13:13:40 2019 -0400 |
| [ |
| @@ -1,7 +1,7 @@ -<tool id="write_supplementary_fastq" name="Extract supplementary alignments" version="0.5.5"> +<tool id="write_supplementary_fastq" name="Extract supplementary alignments" version="0.5.6"> <description>from SAM/BAM alignment files as FASTQ</description> <requirements> - <requirement type="package" version="0.5.5">readtagger</requirement> + <requirement type="package" version="0.5.6">readtagger</requirement> </requirements> <version_command>write_supplementary_fastq --version</version_command> <command detect_errors="aggressive"><![CDATA[ |