Repository 'bam_readtagger'
hg clone https://toolshed.g2.bx.psu.edu/repos/mvdbeek/bam_readtagger

Changeset 50:6c6a6a828c4f (2019-02-14)
Previous changeset 49:f4344d943248 (2019-02-14) Next changeset 51:08656cd6c989 (2019-02-15)
Commit message:
planemo upload for repository https://github.com/bardin-lab/readtagger/tree/master/galaxy commit faaf13601245173e1a8647ff9599a74b2f092401-dirty
modified:
bam_readtagger.xml
b
diff -r f4344d943248 -r 6c6a6a828c4f bam_readtagger.xml
--- a/bam_readtagger.xml Thu Feb 14 07:44:58 2019 -0500
+++ b/bam_readtagger.xml Thu Feb 14 12:13:57 2019 -0500
b
@@ -23,9 +23,9 @@
         -o '$tagged_file'
     ]]></command>
     <inputs>
-        <param name="tag_file" argument="--tag_file" type="data" format="bam,qname_input_sorted.bam"/>
+        <param name="tag_file" argument="--tag_file" type="data" format="bam,qname_sorted.bam"/>
         <repeat name="alignment_series" title="Alignments">
-            <param name="annotate_with" argument="--annotate_with" type="data" format="bam,qname_input_sorted.bam"/>
+            <param name="annotate_with" argument="--annotate_with" type="data" format="bam,qname_sorted.bam"/>
             <param type="select" name="r_tag" label="First letter to use for read tag" value="A">
                 <expand macro="tag_options"/>
             </param>