Repository 'bam_readtagger'
hg clone https://toolshed.g2.bx.psu.edu/repos/mvdbeek/bam_readtagger

Changeset 17:777fd55e66ac (2017-04-03)
Previous changeset 16:ffd8bf1b9ebc (2017-03-31) Next changeset 18:8fef53971086 (2017-04-03)
Commit message:
planemo upload for repository https://github.com/bardin-lab/readtagger/tree/master/galaxy commit f28b0130760f515502b7858bd92adf948a942f39-dirty
modified:
deploy.sh
findcluster.xml
b
diff -r ffd8bf1b9ebc -r 777fd55e66ac findcluster.xml
--- a/findcluster.xml Fri Mar 31 16:28:20 2017 -0400
+++ b/findcluster.xml Mon Apr 03 09:40:32 2017 -0400
[
@@ -5,8 +5,10 @@
     </requirements>
     <version_command>findcluster --version</version_command>
     <command detect_errors="aggressive"><![CDATA[
+        ln -f -s $input_path input.bam &&
+        ln -f -s $input.metadata.bam_index input.bam.bai &&
         findcluster
-        --input_path '$input'
+        --input_path input.bam
         #if $reference_fasta:
             --reference_fasta '$reference_fasta'
         #end if