Repository 'bam_readtagger'
hg clone https://toolshed.g2.bx.psu.edu/repos/mvdbeek/bam_readtagger

Changeset 32:bf3d04937095 (2017-06-21)
Previous changeset 31:301316cb596a (2017-06-21) Next changeset 33:c7f140920cc1 (2017-11-09)
Commit message:
planemo upload for repository https://github.com/bardin-lab/readtagger/tree/master/galaxy commit 0291e13a331e921ff4c5c1859c83cd6f3a8f5f5d
modified:
deploy.sh
findcluster.xml
b
diff -r 301316cb596a -r bf3d04937095 findcluster.xml
--- a/findcluster.xml Wed Jun 21 09:38:25 2017 -0400
+++ b/findcluster.xml Wed Jun 21 09:57:48 2017 -0400
b
@@ -16,14 +16,14 @@
             #if str($transposon_source.reference_source_selector) == "history":
                 --transposon_reference_fasta '$transposon_source.ref_file'
             #else :
-                --transposon_bwa_index '$reference_source.ref_file.fields.path'
+                --transposon_bwa_index '$transposon_source.ref_file.fields.path'
             #end if
         #end if
         #if $genome_source.ref_file:
             #if str($genome_source.reference_source_selector) == "history":
                 --genome_reference_fasta '$genome_source.ref_file'
             #else :
-                --genome_bwa_index '$reference_source.ref_file.fields.path'
+                --genome_bwa_index '$genome_source.ref_file.fields.path'
             #end if
         #end if
         --output_bam '$output_bam'