Repository 'bam_readtagger'
hg clone https://toolshed.g2.bx.psu.edu/repos/mvdbeek/bam_readtagger

Changeset 30:db5c766503dd (2017-05-11)
Previous changeset 29:2c62ca47c455 (2017-05-09) Next changeset 31:301316cb596a (2017-06-21)
Commit message:
planemo upload for repository https://github.com/bardin-lab/readtagger/tree/master/galaxy commit 2cbc10868c9e63e40420da780cc68d5378cc6d5e-dirty
modified:
add_matesequence.xml
allow_dovetailing.xml
bam_readtagger.xml
findcluster.xml
update_mapq.xml
write_supplementary_fastq.xml
b
diff -r 2c62ca47c455 -r db5c766503dd add_matesequence.xml
--- a/add_matesequence.xml Tue May 09 12:54:10 2017 -0400
+++ b/add_matesequence.xml Thu May 11 05:33:27 2017 -0400
[
@@ -1,7 +1,7 @@
-<tool id="add_matesequence" name="Add matesequence" version="0.3.23">
+<tool id="add_matesequence" name="Add matesequence" version="0.3.24">
     <description>into tag field</description>
     <requirements>
-        <requirement type="package" version="0.3.23">readtagger</requirement>
+        <requirement type="package" version="0.3.24">readtagger</requirement>
     </requirements>
     <version_command>add_matesequence --version</version_command>
     <command detect_errors="aggressive"><![CDATA[
b
diff -r 2c62ca47c455 -r db5c766503dd allow_dovetailing.xml
--- a/allow_dovetailing.xml Tue May 09 12:54:10 2017 -0400
+++ b/allow_dovetailing.xml Thu May 11 05:33:27 2017 -0400
[
@@ -1,7 +1,7 @@
-<tool id="allow_dovetailing" name="Allow dovetailing" version="0.3.23">
+<tool id="allow_dovetailing" name="Allow dovetailing" version="0.3.24">
     <description>modifies proper_pair flag in bam files</description>
     <requirements>
-        <requirement type="package" version="0.3.23">readtagger</requirement>
+        <requirement type="package" version="0.3.24">readtagger</requirement>
     </requirements>
     <command detect_errors="aggressive"><![CDATA[
         allow_dovetailing -i '$input' -o '$output'
b
diff -r 2c62ca47c455 -r db5c766503dd bam_readtagger.xml
--- a/bam_readtagger.xml Tue May 09 12:54:10 2017 -0400
+++ b/bam_readtagger.xml Thu May 11 05:33:27 2017 -0400
[
@@ -1,10 +1,10 @@
-<tool id="bam_readtagger" name="Tag alignment files" version="0.3.23">
+<tool id="bam_readtagger" name="Tag alignment files" version="0.3.24">
     <description>from multiple bam files</description>
     <macros>
         <import>macros.xml</import>
     </macros>
     <requirements>
-        <requirement type="package" version="0.3.23">readtagger</requirement>
+        <requirement type="package" version="0.3.24">readtagger</requirement>
     </requirements>
     <command detect_errors="aggressive"><![CDATA[
         readtagger -t '$tag_file' -s
b
diff -r 2c62ca47c455 -r db5c766503dd findcluster.xml
--- a/findcluster.xml Tue May 09 12:54:10 2017 -0400
+++ b/findcluster.xml Thu May 11 05:33:27 2017 -0400
[
@@ -1,7 +1,7 @@
-<tool id="findcluster" name="Find clusters of reads" version="0.3.23">
+<tool id="findcluster" name="Find clusters of reads" version="0.3.24">
     <description>in bam files</description>
     <requirements>
-        <requirement type="package" version="0.3.23">readtagger</requirement>
+        <requirement type="package" version="0.3.24">readtagger</requirement>
     </requirements>
     <version_command>findcluster --version</version_command>
     <command detect_errors="aggressive"><![CDATA[
b
diff -r 2c62ca47c455 -r db5c766503dd update_mapq.xml
--- a/update_mapq.xml Tue May 09 12:54:10 2017 -0400
+++ b/update_mapq.xml Thu May 11 05:33:27 2017 -0400
[
@@ -1,7 +1,7 @@
-<tool id="update_mapq" name="Update MAPQ score" version="0.3.23">
+<tool id="update_mapq" name="Update MAPQ score" version="0.3.24">
     <description>of supplementary alignments</description>
     <requirements>
-        <requirement type="package" version="0.3.23">readtagger</requirement>
+        <requirement type="package" version="0.3.24">readtagger</requirement>
     </requirements>
     <version_command>update_mapq --version</version_command>
     <command detect_errors="aggressive"><![CDATA[
b
diff -r 2c62ca47c455 -r db5c766503dd write_supplementary_fastq.xml
--- a/write_supplementary_fastq.xml Tue May 09 12:54:10 2017 -0400
+++ b/write_supplementary_fastq.xml Thu May 11 05:33:27 2017 -0400
[
@@ -1,7 +1,7 @@
-<tool id="write_supplementary_fastq" name="Extract supplementary alignments" version="0.3.23">
+<tool id="write_supplementary_fastq" name="Extract supplementary alignments" version="0.3.24">
     <description>from SAM/BAM alignment files as FASTQ</description>
     <requirements>
-        <requirement type="package" version="0.3.23">readtagger</requirement>
+        <requirement type="package" version="0.3.24">readtagger</requirement>
     </requirements>
     <version_command>write_supplementary_fastq --version</version_command>
     <command detect_errors="aggressive"><![CDATA[