| Previous changeset 1:4696fc685d83 (2023-01-13) Next changeset 3:e3fdc3dc9fcc (2024-04-25) |
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Commit message:
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__composition commit 65e4952f33eb335528e8553150e9097e5ea8f556 |
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modified:
qiime2__composition__ancom.xml test-data/ancombc.test0.metadata.tsv test-data/ancombc.test0.table.qza test-data/ancombc.test1.metadata.tsv test-data/ancombc.test1.table.qza |
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| diff -r 4696fc685d83 -r e3a9e7cb7b77 qiime2__composition__ancom.xml --- a/qiime2__composition__ancom.xml Fri Jan 13 22:05:02 2023 +0000 +++ b/qiime2__composition__ancom.xml Thu Jun 08 19:34:40 2023 +0000 |
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| @@ -6,14 +6,14 @@ --> <!-- This tool was automatically generated by: - q2galaxy (version: 2022.11.1) + q2galaxy (version: 2023.5.0) for: - qiime2 (version: 2022.11.1) + qiime2 (version: 2023.5.1) --> -<tool name="qiime2 composition ancom" id="qiime2__composition__ancom" version="2022.11.2+q2galaxy.2022.11.1.2" profile="22.05" license="BSD-3-Clause"> +<tool name="qiime2 composition ancom" id="qiime2__composition__ancom" version="2023.5.0+q2galaxy.2023.5.0.2" profile="22.05" license="BSD-3-Clause"> <description>Apply ANCOM to identify features that differ in abundance.</description> <requirements> - <container type="docker">quay.io/qiime2/core:2022.11</container> + <container type="docker">quay.io/qiime2/core:2023.5</container> </requirements> <version_command>q2galaxy version composition</version_command> <command detect_errors="exit_code">q2galaxy run composition ancom '$inputs'</command> @@ -56,6 +56,7 @@ <option value="mean_difference">mean_difference</option> <option value="f_statistic">f_statistic</option> </param> + <param name="filter_missing" type="boolean" truevalue="__q2galaxy__::literal::True" falsevalue="__q2galaxy__::literal::False" label="filter_missing: Bool" help="[default: No] If True, samples with missing metadata values will be filtered from the table prior to analysis. If False, an error will be raised if there are any missing metadata values."/> </section> </inputs> <outputs> |
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| diff -r 4696fc685d83 -r e3a9e7cb7b77 test-data/ancombc.test0.metadata.tsv --- a/test-data/ancombc.test0.metadata.tsv Fri Jan 13 22:05:02 2023 +0000 +++ b/test-data/ancombc.test0.metadata.tsv Thu Jun 08 19:34:40 2023 +0000 |
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| @@ -1,5 +1,5 @@ sample-id barcode-sequence bodysite month day subject animal testcolumn singlecolumn AZcolumn -#q2:types categorical categorical numeric numeric categorical categorical categorical categorical categorical +#q2:types categorical categorical categorical numeric categorical categorical categorical categorical categorical L1S8 AGCTGACTAGTC gut 10 28 subject-1 dog test1 value A L1S57 ACACACTATGGC gut 1 20 subject-1 dog test2 value Z L1S76 ACTACGTGTGGT gut 2 17 subject-1 cow test1 value Z @@ -34,3 +34,6 @@ L6S93 GCGTTACACACA tongue 3 17 subject-2 dog test1 value Z L6S20 GAACTGTATCTC tongue 4 14 subject-2 bird test2 value Z L6S68 CTGGACTCATAG gut 10 28 subject-2 cow test1 value Z +L6SD93 GCGTTACACACA toe 3 17 subject-2 dog test1 value +L6SD20 GAACTGTATCTC toe 4 14 subject-2 bird test2 value +L6SD68 CTGGACTCATAG toe 10 28 subject-2 cow test1 value |
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| diff -r 4696fc685d83 -r e3a9e7cb7b77 test-data/ancombc.test0.table.qza |
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| Binary file test-data/ancombc.test0.table.qza has changed |
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| diff -r 4696fc685d83 -r e3a9e7cb7b77 test-data/ancombc.test1.metadata.tsv --- a/test-data/ancombc.test1.metadata.tsv Fri Jan 13 22:05:02 2023 +0000 +++ b/test-data/ancombc.test1.metadata.tsv Thu Jun 08 19:34:40 2023 +0000 |
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| @@ -1,5 +1,5 @@ sample-id barcode-sequence bodysite month day subject animal testcolumn singlecolumn AZcolumn -#q2:types categorical categorical numeric numeric categorical categorical categorical categorical categorical +#q2:types categorical categorical categorical numeric categorical categorical categorical categorical categorical L1S8 AGCTGACTAGTC gut 10 28 subject-1 dog test1 value A L1S57 ACACACTATGGC gut 1 20 subject-1 dog test2 value Z L1S76 ACTACGTGTGGT gut 2 17 subject-1 cow test1 value Z @@ -34,3 +34,6 @@ L6S93 GCGTTACACACA tongue 3 17 subject-2 dog test1 value Z L6S20 GAACTGTATCTC tongue 4 14 subject-2 bird test2 value Z L6S68 CTGGACTCATAG gut 10 28 subject-2 cow test1 value Z +L6SD93 GCGTTACACACA toe 3 17 subject-2 dog test1 value +L6SD20 GAACTGTATCTC toe 4 14 subject-2 bird test2 value +L6SD68 CTGGACTCATAG toe 10 28 subject-2 cow test1 value |
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| diff -r 4696fc685d83 -r e3a9e7cb7b77 test-data/ancombc.test1.table.qza |
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| Binary file test-data/ancombc.test1.table.qza has changed |