Previous changeset 0:db7ecc1aaf59 (2020-04-08) Next changeset 2:2fa2f084ad32 (2020-06-01) |
Commit message:
"planemo upload for repository https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/ commit 241c850301f8094f6aa0016e2335a8b550c29aed" |
modified:
scpred_get_feature_space.xml scpred_macros.xml |
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diff -r db7ecc1aaf59 -r 4a77d2091aec scpred_get_feature_space.xml --- a/scpred_get_feature_space.xml Wed Apr 08 06:38:03 2020 -0400 +++ b/scpred_get_feature_space.xml Fri Apr 24 11:28:26 2020 -0400 |
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@@ -5,7 +5,15 @@ </macros> <expand macro='requirements' /> <command detect_errors='exit_code'><![CDATA[ - scpred_get_feature_space.R --input-object '${input_object}' --prediction-column '${prediction_column}' --explained-var-limit '${explained_var_limit}' --output-path '${output_obj_path}' --eigenvalue-plot-path '${eigenvalue_plot_path}']]></command> + scpred_get_feature_space.R --input-object '${input_object}' --prediction-column '${prediction_column}' --output-path '${output_obj_path}' + + #if $explained_var_limit + --explained-var-limit '${explained_var_limit}' + #end if + #if $eigenvalue_plot_path + --eigenvalue-plot-path '${eigenvalue_plot_path}' + #end if + ]]></command> <inputs> <param type='data' name='input_object' label='Input SCE object' format='rdata' help='Input SCE object in .rds format' /> <param type='text' name='prediction_column' label='Prediction column' help='Name of the metadata column that contains training labels' /> |
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diff -r db7ecc1aaf59 -r 4a77d2091aec scpred_macros.xml --- a/scpred_macros.xml Wed Apr 08 06:38:03 2020 -0400 +++ b/scpred_macros.xml Fri Apr 24 11:28:26 2020 -0400 |
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@@ -4,7 +4,7 @@ <token name="@PROFILE@">18.01</token> <xml name="requirements"> <requirements> - <requirement type="package" version="0.0.5">scpred-cli</requirement> + <requirement type="package" version="0.0.7">scpred-cli</requirement> <yield/> </requirements> </xml> @@ -37,10 +37,9 @@ journal = {GitHub repository}, url = {https://github.com/ebi-gene-expression-group/scpred-cli.git}, } - </citation> + <citation type="doi">10.1101/2020.04.08.032698</citation> <yield /> </citations> </xml> </macros> - |