Repository 'mothur_classify_seqs'
hg clone https://toolshed.g2.bx.psu.edu/repos/iuc/mothur_classify_seqs

Changeset 4:80e504a868e8 (2018-04-06)
Previous changeset 3:5b53b77232dc (2018-03-20) Next changeset 5:5da484e2c7a4 (2018-04-23)
Commit message:
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mothur commit 283d5933cd945b7815b3da2ce45baa60d73e9746
added:
test-data/chimera.count_table
test-data/chimera.fasta
test-data/chimera.vsearch.accnos
test-data/chimera.vsearch.chimeras
test-data/chimera.vsearch.count_table
b
diff -r 5b53b77232dc -r 80e504a868e8 test-data/chimera.count_table
--- /dev/null Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/chimera.count_table Fri Apr 06 04:19:20 2018 -0400
b
@@ -0,0 +1,122 @@
+Representative_Sequence total Mock
+M00967_43_000000000-A3JHG_1_1101_14069_1827 1 1
+M00967_43_000000000-A3JHG_1_1101_17674_2779 1 1
+M00967_43_000000000-A3JHG_1_1101_9376_4054 1 1
+M00967_43_000000000-A3JHG_1_1101_16910_7379 2 2
+M00967_43_000000000-A3JHG_1_1101_24218_7727 1 1
+M00967_43_000000000-A3JHG_1_1101_26181_9437 1 1
+M00967_43_000000000-A3JHG_1_1101_28516_16324 1 1
+M00967_43_000000000-A3JHG_1_1101_17802_26911 1 1
+M00967_43_000000000-A3JHG_1_1102_20832_5250 113 113
+M00967_43_000000000-A3JHG_1_1106_24475_12056 1 1
+M00967_43_000000000-A3JHG_1_1106_25798_21572 170 170
+M00967_43_000000000-A3JHG_1_1111_22890_9747 2 2
+M00967_43_000000000-A3JHG_1_2103_24027_17117 1 1
+M00967_43_000000000-A3JHG_1_2113_21352_15666 1 1
+M00967_43_000000000-A3JHG_1_2113_28097_13665 1 1
+M00967_43_000000000-A3JHG_1_1106_14252_8640 273 273
+M00967_43_000000000-A3JHG_1_1106_9147_22015 173 173
+M00967_43_000000000-A3JHG_1_1110_27249_9297 99 99
+M00967_43_000000000-A3JHG_1_2101_20023_3542 1 1
+M00967_43_000000000-A3JHG_1_2103_19057_10430 548 548
+M00967_43_000000000-A3JHG_1_2108_22020_21434 341 341
+M00967_43_000000000-A3JHG_1_2109_20085_20830 275 275
+M00967_43_000000000-A3JHG_1_2109_24829_22616 287 287
+M00967_43_000000000-A3JHG_1_1113_29188_13629 199 199
+M00967_43_000000000-A3JHG_1_2113_21823_22689 369 369
+M00967_43_000000000-A3JHG_1_1101_19936_3208 170 170
+M00967_43_000000000-A3JHG_1_1101_13293_4703 89 89
+M00967_43_000000000-A3JHG_1_1101_9121_7358 241 241
+M00967_43_000000000-A3JHG_1_1101_20566_7622 317 317
+M00967_43_000000000-A3JHG_1_1101_18269_8162 2 2
+M00967_43_000000000-A3JHG_1_1101_19986_8261 3 3
+M00967_43_000000000-A3JHG_1_1101_22097_8638 130 130
+M00967_43_000000000-A3JHG_1_1101_17781_8827 1 1
+M00967_43_000000000-A3JHG_1_1101_10877_9025 2 2
+M00967_43_000000000-A3JHG_1_1101_8083_11382 1 1
+M00967_43_000000000-A3JHG_1_1101_22600_11606 18 18
+M00967_43_000000000-A3JHG_1_1101_18457_12122 141 141
+M00967_43_000000000-A3JHG_1_1101_2601_14288 1 1
+M00967_43_000000000-A3JHG_1_1101_20136_15321 1 1
+M00967_43_000000000-A3JHG_1_1101_22252_18361 45 45
+M00967_43_000000000-A3JHG_1_1102_22032_8906 1 1
+M00967_43_000000000-A3JHG_1_1102_28309_11693 1 1
+M00967_43_000000000-A3JHG_1_1102_11996_19459 1 1
+M00967_43_000000000-A3JHG_1_1103_18439_9570 1 1
+M00967_43_000000000-A3JHG_1_1103_17703_17444 2 2
+M00967_43_000000000-A3JHG_1_1103_15262_26591 2 2
+M00967_43_000000000-A3JHG_1_1104_11653_4504 2 2
+M00967_43_000000000-A3JHG_1_1104_14862_19649 1 1
+M00967_43_000000000-A3JHG_1_1104_10368_19796 2 2
+M00967_43_000000000-A3JHG_1_1104_23658_26022 1 1
+M00967_43_000000000-A3JHG_1_1105_6783_9901 1 1
+M00967_43_000000000-A3JHG_1_1105_15970_15381 1 1
+M00967_43_000000000-A3JHG_1_1105_16780_22313 1 1
+M00967_43_000000000-A3JHG_1_1105_12173_24328 1 1
+M00967_43_000000000-A3JHG_1_1106_8935_10829 1 1
+M00967_43_000000000-A3JHG_1_1106_22147_11545 1 1
+M00967_43_000000000-A3JHG_1_1107_22653_9906 2 2
+M00967_43_000000000-A3JHG_1_1107_8955_12308 2 2
+M00967_43_000000000-A3JHG_1_1107_8466_14296 1 1
+M00967_43_000000000-A3JHG_1_1107_11945_14699 2 2
+M00967_43_000000000-A3JHG_1_1107_21101_17742 1 1
+M00967_43_000000000-A3JHG_1_1108_27204_7885 2 2
+M00967_43_000000000-A3JHG_1_1108_13143_12552 1 1
+M00967_43_000000000-A3JHG_1_1108_7852_15587 1 1
+M00967_43_000000000-A3JHG_1_1108_23614_18589 1 1
+M00967_43_000000000-A3JHG_1_1108_15093_19715 1 1
+M00967_43_000000000-A3JHG_1_1109_4809_15779 1 1
+M00967_43_000000000-A3JHG_1_1110_23880_14461 1 1
+M00967_43_000000000-A3JHG_1_1110_24675_19216 1 1
+M00967_43_000000000-A3JHG_1_1110_15840_20779 3 3
+M00967_43_000000000-A3JHG_1_1111_25634_11162 1 1
+M00967_43_000000000-A3JHG_1_1111_19100_13750 1 1
+M00967_43_000000000-A3JHG_1_1111_27151_20578 1 1
+M00967_43_000000000-A3JHG_1_1112_24767_9928 1 1
+M00967_43_000000000-A3JHG_1_1112_23422_10614 1 1
+M00967_43_000000000-A3JHG_1_1112_26117_11713 1 1
+M00967_43_000000000-A3JHG_1_1112_4337_15429 1 1
+M00967_43_000000000-A3JHG_1_1112_21728_27092 1 1
+M00967_43_000000000-A3JHG_1_1113_16694_13754 1 1
+M00967_43_000000000-A3JHG_1_1113_20871_14344 1 1
+M00967_43_000000000-A3JHG_1_1113_12471_18816 1 1
+M00967_43_000000000-A3JHG_1_1113_16327_24237 1 1
+M00967_43_000000000-A3JHG_1_1113_14854_24384 1 1
+M00967_43_000000000-A3JHG_1_1114_7252_4589 1 1
+M00967_43_000000000-A3JHG_1_1114_8032_8820 1 1
+M00967_43_000000000-A3JHG_1_1114_16548_11767 2 2
+M00967_43_000000000-A3JHG_1_1114_29150_14733 1 1
+M00967_43_000000000-A3JHG_1_1114_10899_22898 1 1
+M00967_43_000000000-A3JHG_1_2101_18965_1898 1 1
+M00967_43_000000000-A3JHG_1_2101_16550_11883 2 2
+M00967_43_000000000-A3JHG_1_2101_13178_13004 1 1
+M00967_43_000000000-A3JHG_1_2102_6993_12259 1 1
+M00967_43_000000000-A3JHG_1_2102_12688_15786 1 1
+M00967_43_000000000-A3JHG_1_2102_16641_21046 1 1
+M00967_43_000000000-A3JHG_1_2104_22466_3574 1 1
+M00967_43_000000000-A3JHG_1_2104_15266_7083 1 1
+M00967_43_000000000-A3JHG_1_2104_23877_11861 1 1
+M00967_43_000000000-A3JHG_1_2104_10795_17906 1 1
+M00967_43_000000000-A3JHG_1_2104_14517_21920 1 1
+M00967_43_000000000-A3JHG_1_2105_10923_10313 3 3
+M00967_43_000000000-A3JHG_1_2105_21664_11149 1 1
+M00967_43_000000000-A3JHG_1_2106_12463_10694 1 1
+M00967_43_000000000-A3JHG_1_2106_7204_11261 1 1
+M00967_43_000000000-A3JHG_1_2106_26330_20483 2 2
+M00967_43_000000000-A3JHG_1_2107_13907_8387 1 1
+M00967_43_000000000-A3JHG_1_2107_20590_19864 2 2
+M00967_43_000000000-A3JHG_1_2107_9082_21015 1 1
+M00967_43_000000000-A3JHG_1_2108_5348_13505 1 1
+M00967_43_000000000-A3JHG_1_2108_17630_23878 1 1
+M00967_43_000000000-A3JHG_1_2109_10754_15445 1 1
+M00967_43_000000000-A3JHG_1_2110_7072_11039 1 1
+M00967_43_000000000-A3JHG_1_2110_9144_17633 1 1
+M00967_43_000000000-A3JHG_1_2111_5896_17127 1 1
+M00967_43_000000000-A3JHG_1_2111_12311_21336 1 1
+M00967_43_000000000-A3JHG_1_2112_14825_10079 1 1
+M00967_43_000000000-A3JHG_1_2112_19406_24178 1 1
+M00967_43_000000000-A3JHG_1_2113_11985_5871 1 1
+M00967_43_000000000-A3JHG_1_2114_23175_9025 1 1
+M00967_43_000000000-A3JHG_1_2114_22955_20188 1 1
+M00967_43_000000000-A3JHG_1_2114_27743_21641 2 2
+M00967_43_000000000-A3JHG_1_2114_20166_26072 2 2
b
diff -r 5b53b77232dc -r 80e504a868e8 test-data/chimera.fasta
--- /dev/null Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/chimera.fasta Fri Apr 06 04:19:20 2018 -0400
b
b'@@ -0,0 +1,242 @@\n+>M00967_43_000000000-A3JHG_1_1101_14069_1827\n+TAC--GG-AG-GAT--GCG-A-G-C-G-T-T--AT-C-CGG-AT--TT-A-T-T--GG-GT--TT-A-AA-GG-GT-GC-G-TA-GGC-G-G-C-CT-G-C-C-AA-G-T-C-A-G-C-G-G--TA-A-AA-TT-G-C-GG-GG--CT-C-AA-C-C-C-C-G-T-A--CA-G-C-CGTT-GAAAC-TG-C-CGGGC-TCGA-GT-GG-GC-GA-G-A---AG-T-A-TGCGGAATGCGTGGTGT-AGCGGT-GAAATGCATAG-AT-A-TC-AC-GC-AG-AACCCCGAT-TGCGAAGGCA------GC-ATA-CCG-G-CG-CC-C-T-ACTGACG-CTGA-GGCA-CGAAA-GTG-CGGGG-ATC-AAACAGG\n+>M00967_43_000000000-A3JHG_1_1101_16910_7379\n+TAC--GG-AG-GAT--GCG-A-G-C-G-T-T--AT-C-CGG-AT--TT-A-T-T--GG-GT--TT-A-AA-GG-GT-GC-G-TA-GGC-G-G-G-CT-T-T-T-AA-G-T-C-A-G-C-G-G--TA-A-AA-AT-T-C-GG-GG--CT-C-AA-C-C-C-C-G-T-C--CG-G-C-CGTT-GAAAC-TG-G-GGGCC-TTGA-GT-GG-GC-GA-G-A---AG-A-A-GGCGGAATGCGTGGTGT-AGCGGT-GAAATGCATAG-AT-A-TC-AC-GC-AG-AACCCCGAT-TGCGAAGGCA------GC-CTT-CCG-G-CG-CC-C-T-ACTGACG-CTGA-GGCA-CGAAA-GTG-CGGGG-ATC-GAACAGG\n+>M00967_43_000000000-A3JHG_1_1101_17674_2779\n+TAC--GG-AG-GAT--GCG-A-G-C-G-T-T--AT-C-CGG-AT--TT-A-T-T--GG-GT--TT-A-AA-GG-GT-GC-G-CA-GGC-G-G-A-CT-C-T-C-AA-G-T-C-A-G-C-G-G--TC-A-AA-TC-G-C-GG-GG--CT-C-AA-C-C-C-C-G-T-T--CC-G-C-CGTT-GAAAC-TG-G-GAGCC-TTGA-GT-GC-GC-GA-G-A---AG-T-A-GGCGGAATGCGTGGTGT-AGCGGT-GAAATGCATAG-AT-A-TC-AC-GC-AG-AACTCCGAT-TGCGAAGGCA------GC-CTA-CCG-G-CG-CG-C-A-ACTGACG-CTCA-TGCA-CGAAA-GCG-TGGGT-ATC-GAACAGG\n+>M00967_43_000000000-A3JHG_1_1101_24218_7727\n+TAC--GG-AG-GAT--GCG-A-G-C-G-T-T--AT-C-CGG-AT--TT-A-T-T--GG-GT--TT-A-AA-GG-GT-GC-G-TA-GGC-G-G-G-AT-G-C-C-AA-G-T-C-A-G-C-G-G--TA-A-AA-AA-G-C-GG-TG--CT-C-AA-C-G-C-C-G-T-C--GA-G-C-CGTT-GAAAC-TG-G-CGTTC-TTGA-GT-GG-GC-GA-G-A---AG-T-A-TGCGGAATGCGTGGTGT-AGCGGT-GAAATGCATAG-AT-A-TC-AC-GC-AG-AACTCCGAT-TGCGAAGGCA------GC-ATA-CCG-G-CG-CC-C-T-ACTGACG-CTGA-GGCA-CGAAA-GCG-TGGGT-ATC-GAACAGG\n+>M00967_43_000000000-A3JHG_1_1101_9376_4054\n+TAC--GG-AG-GAT--TCA-A-G-C-G-T-T--AT-C-CGG-AT--TT-A-T-T--GG-GT--TT-A-AA-GG-GT-GC-G-TA-GGC-G-G-T-TC-G-A-T-AA-G-T-T-A-G-A-G-G--TG-A-AA-TC-C-C-GG-GG--CT-C-AA-C-T-C-C-G-G-C-ACT-G-C-CTCT-GATAC-TG-T-CGGGC-TAGA-GT-TT-AG-TT-G-C---GG-T-A-GGCGGAATGTATGGTGT-AGCGGT-GAAATGCATAG-AG-A-TC-AT-AC-AG-AACACCGAT-TGCGAAGGCA------GC-TTA-CCA-A-AC-TA-C-G-ACTGACG-TTGA-GGCA-CGAAA-GCG-TGGGG-AGC-AAACAGG\n+>M00967_43_000000000-A3JHG_1_1101_28516_16324\n+TAC--GG-AG-GAT--GCG-A-G-C-G-T-T--AT-C-CGG-AT--TT-A-T-T--GG-GT--TT-A-AA-GG-GT-GC-G-TA-GGC-G-G-T-CC-G-T-T-AA-G-T-C-A-G-C-G-G--TA-A-AA-TT-G-C-GG-GG--CT-C-AA-C-C-C-C-G-T-C--GA-G-C-CGTT-GAAAC-TG-G-CAGAC-TTGA-GT-TG-GC-GA-G-A---AG-T-A-CGCGGAATGCGCGGTGT-AGCGGT-GAAATGCATAG-AT-A-TC-GC-GC-AG-AACTCCGAT-TGCGAAGGCA------GC-GTA-CCG-G-CG-CC-A-G-ACTGACG-CTGA-GGCA-CGAAA-GCG-TGGGG-ATC-GAACAGG\n+>M00967_43_000000000-A3JHG_1_1101_26181_9437\n+TAC--GT-AG-GTG--GCA-A-G-C-G-T-T--AT-C-CGG-AT--TT-A-T-T--GG-GC--GT-A-AA-GC-GA-GC-G-CA-GGC-G-G-T-TG-C-T-T-AG-G-T-C-T-G-A-T-G--TG-A-AA-GC-C-T-TC-GG--CT-T-AA-C-C-G-A-A-G-A-AGT-G-C-ATCG-GAAAC-CG-G-GCGAC-TTGA-GT-GC-AG-AA-G-A---GG-A-C-AGTGGAACTCCATGTGT-AGCGGT-GGAATGCGTAG-AT-A-TA-TG-GA-AG-AACACCAGT-GGCGAAGGCG------GC-TGT-CTG-G-TC-TG-C-A-ACTGACG-CTGA-GGCT-CGAAA-GCA-TGGGT-AGC-GAACAGG\n+>M00967_43_000000000-A3JHG_1_1101_17802_26911\n+TAC--GT-AG-GGG--GCA-A-G-C-G-T-T--AT-C-CGG-AT--TT-A-C-T--GG-GT--GT-A-AA-GG-GA-GC-G-TA-GAC-G-G-C-TG-T-G-C-AA-G-T-C-T-G-A-A-G--TG-A-AA-GC-C-C-GT-GG--CT-C-AA-C-C-G-C-G-G-A-ACT-G-C-TTTG-GAAAC-TG-T-ATAGC-TTGA-GT-AC-TG-GA-G-A---GG-C-A-GGCGGAATTCCTAGTGT-AGCGGT-GAAATGCGTAG-AT-A-TT-AG-GA-GG-AACACCAGT-GGCGAAGGCG------GC-CTG-CTG-G-AC-AG-A-A-ACTGACG-TTGA-GGCT-CGAAA-GCG-TGGGG-AGC-AAACAGG\n+>M00967_43_000000000-A3JHG_1_1106_24475_12056\n+TAC--GT-AG-GGA--GCA-A-G-C-G-T-T--GT-T-CGG-AA--TG-A-C-T--GG-GC--GT-A-AA-GG-GT-GC-G-TA-GGC-G-G-T-TG-T-A-C-AA-G-T-T-A-G-A-A-G--TG-A-AA-TA-C-C-CA-GGG-CT-T-AA-C-T-C-G-G-G-T-GCT-G-C-TTCT-AAAAC-TG-T-ATGAC-TTGA-GT-GC-AG-TA-G-A---GG-T-T-AGTGGAATTCCTAGTGT-AGCGGT-GGAATGCGTAG-AT-A-TT-AG-GA-GG-AACACCAGA-GGCGAAGGCG------GC-TAA-CTG-G-AC-TG-C-A-ACTGACG-CTGA-GGCA-CGAAA-GTG-TGGGG-AGC-AAACAGG\n+>M00967_43_000000000-A3JHG_1_1102_20832_5250\n+TAC--GT-AG-GTG--GCA-A-G-C-G-T-T--GT-C-CGG-AT--TT-A-T-T--GG-GC--GT-A-AA-GC-GA-GT-G-CA-GGC-G-G-T-TC-A-A-T-AA-G-T-C-T-G'..b'AGA-GT-AC-GG-TA-G-A---GG-G-T-GGTGGAATTTCCTGTGT-AGCGGT-GAAATGCGTAG-AT-A-TA-GG-AA-GG-AACACCAGT-GGCGAAGGCG------AC-CAC-CTG-G-AC-TG-A-T-ACTGACG-CTGA-GGCT-CGAAA-GCG-TGGGG-AGC-AAACAGG\n+>M00967_43_000000000-A3JHG_1_1112_24767_9928\n+TAC--GT-AG-GTG--GCA-A-G-C-G-T-T--AT-C-CGG-AT--TT-A-T-T--GG-GT--TT-A-AA-GG-GA-GC-G-TA-GAT-G-G-A-TG-T-T-T-AA-G-T-C-A-G-T-T-G--TG-A-AA-GT-T-T-GC-GG--CT-C-AA-C-C-G-T-A-A-A-ATT-G-C-AGTT-GATAC-TG-G-ATATC-TTGA-GT-GC-AG-TT-G-A---GG-C-A-GGCGGAATTCGTGGTGT-AGCGGT-GAAATGCTTAG-AT-A-TC-AC-GA-GG-AACTCCGAT-TGCGAAGGCA------GC-CTG-CTA-A-GC-TG-C-A-ACTGACA-TTGA-GGCT-CGAAA-GTG-TGGGT-ATC-AAACAGG\n+>M00967_43_000000000-A3JHG_1_1108_7852_15587\n+TAC--GT-AG-GTG--GCA-A-G-C-G-T-T--GT-C-CGG-AT--TT-A-T-T--GG-GC--GT-A-AA-GC-GA-GC-G-CA-GGC-G-G-T-TT-C-T-T-AA-G-T-C-T-G-A-T-G--TG-A-AA-GC-C-C-AC-GG--CT-C-AA-C-C-G-T-G-G-A-G-G-GTC-ATTG-GAAAC-TG-G-GAGAC-TTGA-GT-GC-AG-AA-G-A---GG-A-A-AGTGGAATTCCATGTGT-AGCGGT-GAAATGCGTAG-AG-A-TA-TG-GA-GG-AACACCAGT-GGCGAAGGCG------AC-TTT-CTG-G-TC-TG-T-A-ACTGACA-CTGA-GGCG-CGAAA-GCG-TGGGG-AGC-AAACAGG\n+>M00967_43_000000000-A3JHG_1_1108_13143_12552\n+TAC--GG-AG-GGT--GCA-A-G-C-G-T-T--AC-T-CGG-AA--TC-A-C-T--GG-GC--GT-A-AA-GA-GC-GC-G-TA-GGC-G-G-A-TC-G-G-A-AA-G-T-C-A-G-A-G-G--TG-A-AA-TC-C-C-AG-GG--CT-C-AA-C-C-C-T-G-G-A-ACC-G-C-CTTT-GAAAC-TC-C-CGATC-TTGA-GG-TC-GA-GA-G-A---GG-T-G-AGTGGAATTCCGAGTGT-AGAGGT-GAAATTCGTAG-AT-A-TT-CG-GA-GG-AACACCAGT-GGCGAAGGCG------GC-TCA-CTG-G-CT-CG-A-T-ACTGACG-CTGA-GGTG-CGAAA-GCG-TGGGG-AGC-AAACAGG\n+>M00967_43_000000000-A3JHG_1_1108_27204_7885\n+TAC--GT-AG-GTG--GCA-A-G-C-G-T-T--GT-C-CGG-AT--TT-A-T-T--GG-GC--GT-A-AA-GC-GA-GC-G-CA-GGC-G-G-T-TT-C-T-T-AA-G-T-C-T-G-A-T-G--TG-A-AA-GC-C-C-CC-GG--CT-C-AA-C-C-G-G-G-G-A-G-G-GTC-ATTG-GAAAC-TG-G-GAGAC-TTGA-GT-GC-AG-AA-G-A---GG-A-G-AGTGGAATTCCATGTGT-AGCGGT-GAAATGCGTAG-AG-A-TA-TG-GA-GG-AACACCAGT-GGCGAAGGCG------AC-TTT-CTG-G-TC-TG-T-A-ACTGACA-CTGA-GGCG-CGAAA-GCG-TGGGG-AGC-AAACAGG\n+>M00967_43_000000000-A3JHG_1_1107_21101_17742\n+TAC--GT-AG-GGC--GCG-A-G-C-G-T-T--GT-C-CGG-AA--TT-A-T-T--GG-GC--GT-A-AA-GG-GC-TT-G-TA-GGC-G-G-T-TG-G-T-C-GC-G-T-C-T-G-C-C-G--TG-A-AA-TC-C-T-CT-GG--CT-T-AA-C-T-G-G-G-G-G-TGT-G-C-GGTG-GGTAC-GG-G-CTGAC-TTGA-GT-GC-GG-TA-G-G---GG-A-G-ACTGGAACTCCTGGTGT-AGCGGT-GGAATGCGCAG-AT-A-TC-AG-GA-AG-AACACCGGT-GGCGAAGGCG------GG-TCT-CTG-G-GC-CG-T-T-ACTGACG-CTGA-GGCT-CGAAA-GCG-TGGGT-AGC-GAACAGG\n+>M00967_43_000000000-A3JHG_1_1110_23880_14461\n+TAC--GT-AG-GTG--GCA-A-G-C-G-T-T--GT-C-CGG-AT--TT-A-T-T--GG-GC--GT-A-AA-GC-GA-GC-G-CA-GGC-G-G-T-TC-T-T-T-AA-G-T-C-T-G-A-A-G--TT-A-AA-GG-C-A-GT-GG--CT-T-AA-C-C-A-T-T-G-T-A-C-G-C-TTTG-GAAAC-TG-G-AGGAC-TTGA-GT-GC-AG-AA-G-G---GG-A-G-AGTGGAATTCCATGTGT-AGCGGT-GAAATGCGTAG-AT-A-TA-TG-GA-GG-AACACCGGT-GGCGAAAGCG------GC-TCT-CTG-G-TC-TG-T-A-ACTGACG-CTGA-GGCT-CGAAA-GCG-TGGGG-AGC-AAACAGG\n+>M00967_43_000000000-A3JHG_1_1109_4809_15779\n+TAC--GT-AG-GTG--GCA-A-G-C-G-T-T--GT-C-CGG-AT--TT-A-C-T--GG-GC--GT-A-AA-GG-GA-GC-G-TA-GGT-G-G-A-TA-T-T-T-AA-G-T-G-G-G-A-T-G--TG-A-AA-TA-C-T-CG-GG--CT-T-AA-C-C-T-G-G-G-T-GCT-G-C-ATTC-CAAAC-TG-G-ATATC-TAGA-GT-GC-AG-GA-G-A---GG-A-A-AGTAGAATTCCTAGTGT-AGCGGT-GAAATGCGTAG-AG-A-TT-AG-GA-AG-AATACCAGT-GGCGAAGGCG------AC-TCT-CTG-G-TC-TG-T-A-ACTGACG-CTGA-GGCG-CGAAA-GCG-TGGGG-AGC-AAACAGG\n+>M00967_43_000000000-A3JHG_1_1108_15093_19715\n+TAC--GT-AG-GGG--GCA-A-G-C-G-T-T--AT-C-CGG-AT--TT-A-C-T--GG-GT--GT-A-AA-GG-GG-GC-G-CA-GAC-G-G-C-AG-C-G-C-AA-G-C-C-A-G-G-A-G--TG-A-AA-GC-C-C-GG-GG--CC-C-AA-C-C-C-CGG-G-A--CT-G-C-TCTT-GGAAC-TG-C-GCGGC-TGGA-GT-GC-AG-GA-G-G---GG-C-A-GGCGGAATTCCTGGTGT-AGCGGT-GAAATGCATAG-AT-A-TC-AC-GC-AG-AACTCCGAT-TGCGAAGGCA------GC-ATA-CCG-G-CG-CC-C-T-ACTGACG-CTGA-AGCA-CGAAA-GCG-TGGGT-ATC-GAACAGG\n+>M00967_43_000000000-A3JHG_1_1108_23614_18589\n+TAC--GT-AG-GTG--GCA-A-G-C-G-T-T--GT-C-CGG-AT--TT-A-T-T--GG-GC--GT-A-AA-GC-GA-GC-G-CA-GGC-G-G-T-TA-G-A-T-AA-G-T-C-T-G-A-A-G--TT-A-AA-GG-C-T-GT-GG--CT-T-AA-C-C-A-T-A-G-T-A-G-G-C-TTTG-GAAAC-TG-T-TTAAC-TTGA-GT-GC-AA-GA-G-G---GG-A-G-AGTGGAATTCCATGTGT-AGCGGT-GAAATGCGTAG-AT-A-TA-TG-GA-GG-AACACCGGT-GGCGAAAGCG------GC-TCT-CTG-G-CT-TG-T-A-ACTGACG-CTGA-GGCT-CGAAA-GCG-TGGGG-AGC-AAACAGG\n'
b
diff -r 5b53b77232dc -r 80e504a868e8 test-data/chimera.vsearch.accnos
--- /dev/null Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/chimera.vsearch.accnos Fri Apr 06 04:19:20 2018 -0400
b
@@ -0,0 +1,63 @@
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b
diff -r 5b53b77232dc -r 80e504a868e8 test-data/chimera.vsearch.chimeras
--- /dev/null Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/chimera.vsearch.chimeras Fri Apr 06 04:19:20 2018 -0400
b
b'@@ -0,0 +1,121 @@\n+0.0000\tM00967_43_000000000-A3JHG_1_2103_19057_10430;size=548;\t*\t*\t*\t*\t*\t*\t*\t*\t0\t0\t0\t0\t0\t0\t*\tN\n+0.0000\tM00967_43_000000000-A3JHG_1_2113_21823_22689;size=369;\t*\t*\t*\t*\t*\t*\t*\t*\t0\t0\t0\t0\t0\t0\t*\tN\n+0.0000\tM00967_43_000000000-A3JHG_1_2108_22020_21434;size=341;\t*\t*\t*\t*\t*\t*\t*\t*\t0\t0\t0\t0\t0\t0\t*\tN\n+0.0000\tM00967_43_000000000-A3JHG_1_1101_20566_7622;size=317;\t*\t*\t*\t*\t*\t*\t*\t*\t0\t0\t0\t0\t0\t0\t*\tN\n+0.0000\tM00967_43_000000000-A3JHG_1_2109_24829_22616;size=287;\t*\t*\t*\t*\t*\t*\t*\t*\t0\t0\t0\t0\t0\t0\t*\tN\n+0.0000\tM00967_43_000000000-A3JHG_1_2109_20085_20830;size=275;\t*\t*\t*\t*\t*\t*\t*\t*\t0\t0\t0\t0\t0\t0\t*\tN\n+0.0000\tM00967_43_000000000-A3JHG_1_1106_14252_8640;size=273;\t*\t*\t*\t*\t*\t*\t*\t*\t0\t0\t0\t0\t0\t0\t*\tN\n+0.0000\tM00967_43_000000000-A3JHG_1_1101_9121_7358;size=241;\t*\t*\t*\t*\t*\t*\t*\t*\t0\t0\t0\t0\t0\t0\t*\tN\n+0.0000\tM00967_43_000000000-A3JHG_1_1113_29188_13629;size=199;\t*\t*\t*\t*\t*\t*\t*\t*\t0\t0\t0\t0\t0\t0\t*\tN\n+0.0156\tM00967_43_000000000-A3JHG_1_1106_9147_22015;size=173;\tM00967_43_000000000-A3JHG_1_2103_19057_10430;size=548;\tM00967_43_000000000-A3JHG_1_2108_22020_21434;size=341;\tM00967_43_000000000-A3JHG_1_2108_22020_21434;size=341;\t87.2\t86.0\t86.8\t96.0\t86.8\t4\t3\t28\t3\t0\t1\t0.4\tN\n+0.0000\tM00967_43_000000000-A3JHG_1_1101_19936_3208;size=170;\t*\t*\t*\t*\t*\t*\t*\t*\t0\t0\t0\t0\t0\t0\t*\tN\n+0.0000\tM00967_43_000000000-A3JHG_1_1106_25798_21572;size=170;\t*\t*\t*\t*\t*\t*\t*\t*\t0\t0\t0\t0\t0\t0\t*\tN\n+0.0236\tM00967_43_000000000-A3JHG_1_1101_18457_12122;size=141;\tM00967_43_000000000-A3JHG_1_2103_19057_10430;size=548;\tM00967_43_000000000-A3JHG_1_2108_22020_21434;size=341;\tM00967_43_000000000-A3JHG_1_2108_22020_21434;size=341;\t94.5\t92.9\t93.7\t96.0\t93.7\t3\t1\t6\t5\t1\t6\t0.8\tN\n+0.0482\tM00967_43_000000000-A3JHG_1_1101_22097_8638;size=130;\tM00967_43_000000000-A3JHG_1_2113_21823_22689;size=369;\tM00967_43_000000000-A3JHG_1_2108_22020_21434;size=341;\tM00967_43_000000000-A3JHG_1_2113_21823_22689;size=369;\t86.2\t83.4\t80.2\t77.1\t83.4\t26\t11\t12\t12\t5\t7\t2.8\tN\n+0.0259\tM00967_43_000000000-A3JHG_1_1102_20832_5250;size=113;\tM00967_43_000000000-A3JHG_1_2108_22020_21434;size=341;\tM00967_43_000000000-A3JHG_1_2113_21823_22689;size=369;\tM00967_43_000000000-A3JHG_1_2108_22020_21434;size=341;\t86.6\t86.2\t77.1\t77.1\t86.2\t36\t12\t18\t2\t1\t3\t0.4\tN\n+0.0160\tM00967_43_000000000-A3JHG_1_1110_27249_9297;size=99;\tM00967_43_000000000-A3JHG_1_2103_19057_10430;size=548;\tM00967_43_000000000-A3JHG_1_2108_22020_21434;size=341;\tM00967_43_000000000-A3JHG_1_2103_19057_10430;size=548;\t78.3\t77.1\t76.7\t96.0\t77.1\t5\t1\t52\t3\t0\t2\t1.2\tN\n+0.0000\tM00967_43_000000000-A3JHG_1_1101_13293_4703;size=89;\t*\t*\t*\t*\t*\t*\t*\t*\t0\t0\t0\t0\t0\t0\t*\tN\n+0.0583\tM00967_43_000000000-A3JHG_1_1101_22252_18361;size=45;\tM00967_43_000000000-A3JHG_1_1106_25798_21572;size=170;\tM00967_43_000000000-A3JHG_1_1101_19936_3208;size=170;\tM00967_43_000000000-A3JHG_1_1106_25798_21572;size=170;\t84.2\t82.2\t78.7\t81.4\t82.2\t16\t2\t10\t11\t6\t22\t2.0\tN\n+0.0000\tM00967_43_000000000-A3JHG_1_1101_22600_11606;size=18;\t*\t*\t*\t*\t*\t*\t*\t*\t0\t0\t0\t0\t0\t0\t*\tN\n+0.9327\tM00967_43_000000000-A3JHG_1_1101_19986_8261;size=3;\tM00967_43_000000000-A3JHG_1_2103_19057_10430;size=548;\tM00967_43_000000000-A3JHG_1_1106_14252_8640;size=273;\tM00967_43_000000000-A3JHG_1_1106_14252_8640;size=273;\t100.0\t84.6\t98.8\t83.4\t98.8\t3\t0\t0\t39\t0\t0\t1.2\tY\n+1.6024\tM00967_43_000000000-A3JHG_1_1110_15840_20779;size=3;\tM00967_43_000000000-A3JHG_1_1110_27249_9297;size=99;\tM00967_43_000000000-A3JHG_1_1101_9121_7358;size=241;\tM00967_43_000000000-A3JHG_1_1101_9121_7358;size=241;\t100.0\t73.5\t98.8\t72.3\t98.8\t3\t0\t0\t67\t0\t0\t1.2\tY\n+1.8734\tM00967_43_000000000-A3JHG_1_2105_10923_10313;size=3;\tM00967_43_000000000-A3JHG_1_2103_19057_10430;size=548;\tM00967_43_000000000-A3JHG_1_1101_22252_18361;size=45;\tM00967_43_000000000-A3JHG_1_1101_22252_18361;size=45;\t100.0\t81.4\t98.0\t79.4\t98.0\t5\t0\t0\t47\t0\t0\t2.0\tY\n+0.2097\tM00967_43_000000000-A3JHG_1_1101_10877_9025;size=2;\tM00967_43_000000000-A3JHG_1_2113_21823_22689;size=369;\tM00967_43_000000000-A3JHG_1_1106_25798_21572;size=170;\tM00967_43_000000000-A3JHG_1_2113_21823_22689;size=369;\t99.2\t98.8\t87.0\t87.0\t98.8\t31\t0\t0\t1\t0\t2\t0.4\tN\n+0.0395\tM00967_43_000000000-A3JHG_1_1101_16910_7379'..b'JHG_1_2107_9082_21015;size=1;\tM00967_43_000000000-A3JHG_1_2108_22020_21434;size=341;\tM00967_43_000000000-A3JHG_1_2109_20085_20830;size=275;\tM00967_43_000000000-A3JHG_1_2109_20085_20830;size=275;\t100.0\t79.8\t97.6\t77.5\t97.6\t6\t0\t0\t51\t0\t0\t2.4\tY\n+2.4883\tM00967_43_000000000-A3JHG_1_2108_17630_23878;size=1;\tM00967_43_000000000-A3JHG_1_1101_9121_7358;size=241;\tM00967_43_000000000-A3JHG_1_1101_13293_4703;size=89;\tM00967_43_000000000-A3JHG_1_1101_9121_7358;size=241;\t99.6\t95.7\t86.2\t82.2\t95.7\t34\t0\t1\t10\t0\t0\t4.0\tY\n+3.7628\tM00967_43_000000000-A3JHG_1_2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b
diff -r 5b53b77232dc -r 80e504a868e8 test-data/chimera.vsearch.count_table
--- /dev/null Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/chimera.vsearch.count_table Fri Apr 06 04:19:20 2018 -0400
b
@@ -0,0 +1,59 @@
+Representative_Sequence total Mock
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