Repository 'gmx_sim'
hg clone https://toolshed.g2.bx.psu.edu/repos/chemteam/gmx_sim

Changeset 3:4dba9a5b74fc (2019-12-01)
Previous changeset 2:5642f48f5698 (2019-11-20) Next changeset 4:cdaed42b4223 (2019-12-18)
Commit message:
"planemo upload for repository https://github.com/galaxycomputationalchemistry/galaxy-tools-compchem/tools/gromacs commit 43df863472247b5da304627b6b863c47ab7d02fa"
modified:
macros.xml
sim.xml
b
diff -r 5642f48f5698 -r 4dba9a5b74fc macros.xml
--- a/macros.xml Wed Nov 20 11:13:22 2019 -0500
+++ b/macros.xml Sun Dec 01 09:14:59 2019 -0500
b
@@ -55,9 +55,6 @@
 
         </conditional>
 
-        <param name="capture_log" type="boolean" value="false" label="Generate detailed log" help="Generate detailed log information that can be summarized with ParseLog."/>
-
-
     </xml>
 
     <xml name="log">
b
diff -r 5642f48f5698 -r 4dba9a5b74fc sim.xml
--- a/sim.xml Wed Nov 20 11:13:22 2019 -0500
+++ b/sim.xml Sun Dec 01 09:14:59 2019 -0500
b
@@ -44,7 +44,7 @@
             -o outp.tpr &>> verbose.txt &&
 
 
-        gmx mdrun -deffnm outp &>> verbose.txt
+        gmx mdrun -nt "\${GALAXY_SLOTS:-4}" -deffnm outp &>> verbose.txt
  
         #if $outps.str == 'pdb' or $outps.str == 'both'
             && gmx editconf -f outp.gro -o outp.pdb &>> verbose.txt