| Previous changeset 16:e988563cc6e5 (2021-06-21) Next changeset 18:2b1868ab3724 (2022-02-22) |
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Commit message:
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cardinal commit c8d3adac445b4e08e2724e22d7201bfc38bbf40f" |
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modified:
combine.xml macros.xml test-data/preprocessing_results4.ibd test-data/preprocessing_results4.imzml test-data/preprocessing_results4.imzml.txt test-data/preprocessing_results4.pdf |
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added:
test-data/QC_imzml_shortreport.pdf |
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| diff -r e988563cc6e5 -r aad328eb6c0f combine.xml --- a/combine.xml Mon Jun 21 07:39:51 2021 +0000 +++ b/combine.xml Sun Aug 29 07:29:04 2021 +0000 |
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| @@ -1,4 +1,4 @@ -<tool id="cardinal_combine" name="MSI combine" version="@VERSION@.1"> +<tool id="cardinal_combine" name="MSI combine" version="@VERSION@.0"> <description> combine several mass spectrometry imaging datasets into one </description> @@ -6,9 +6,9 @@ <import>macros.xml</import> </macros> <expand macro="requirements"> - <requirement type="package" version="3.3.2">r-ggplot2</requirement> + <requirement type="package" version="3.3.5">r-ggplot2</requirement> <requirement type="package" version="0.12">r-maldiquantforeign</requirement> - <requirement type="package" version="1.19.3">r-maldiquant</requirement> + <requirement type="package" version="1.20">r-maldiquant</requirement> </expand> <command detect_errors="exit_code"> <![CDATA[ |
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| diff -r e988563cc6e5 -r aad328eb6c0f macros.xml --- a/macros.xml Mon Jun 21 07:39:51 2021 +0000 +++ b/macros.xml Sun Aug 29 07:29:04 2021 +0000 |
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| @@ -1,5 +1,5 @@ <macros> - <token name="@VERSION@">2.6.0</token> + <token name="@VERSION@">2.10.0</token> <xml name="requirements"> <requirements> |
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| diff -r e988563cc6e5 -r aad328eb6c0f test-data/QC_imzml_shortreport.pdf |
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| Binary file test-data/QC_imzml_shortreport.pdf has changed |
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| diff -r e988563cc6e5 -r aad328eb6c0f test-data/preprocessing_results4.ibd |
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| Binary file test-data/preprocessing_results4.ibd has changed |
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| diff -r e988563cc6e5 -r aad328eb6c0f test-data/preprocessing_results4.imzml --- a/test-data/preprocessing_results4.imzml Mon Jun 21 07:39:51 2021 +0000 +++ b/test-data/preprocessing_results4.imzml Sun Aug 29 07:29:04 2021 +0000 |
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| @@ -9,8 +9,8 @@ <fileContent> <cvParam cvRef="MS" accession="MS:1000579" name="MS1 spectrum" value="" /> <cvParam cvRef="MS" accession="MS:1000128" name="profile spectrum" value="" /> - <cvParam cvRef="IMS" accession="IMS:1000080" name="universally unique identifier" value="48842eaf-40e5-4a3f-831c-2d7a3b7e04b9" /> - <cvParam cvRef="IMS" accession="IMS:1000091" name="ibd SHA-1" value="2010ba5b7d44695d891cfe3b6674a5699fa610c0" /> + <cvParam cvRef="IMS" accession="IMS:1000080" name="universally unique identifier" value="04431b64-9f3d-44b4-9e63-81b9e4924aec" /> + <cvParam cvRef="IMS" accession="IMS:1000091" name="ibd SHA-1" value="38a4fadd32374bdf0e4b2bb7d976f6067d542a29" /> <cvParam cvRef="IMS" accession="IMS:1000030" name="continuous" value="" /> </fileContent> </fileDescription> @@ -42,7 +42,7 @@ </sample> </sampleList> <softwareList count="1"> - <software id="Cardinal" version="2.6.0"> + <software id="Cardinal" version="2.10.0"> <cvParam cvRef="MS" accession="MS:1000799" name="custom unreleased software tool" value="" /> </software> </softwareList> |
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| diff -r e988563cc6e5 -r aad328eb6c0f test-data/preprocessing_results4.imzml.txt --- a/test-data/preprocessing_results4.imzml.txt Mon Jun 21 07:39:51 2021 +0000 +++ b/test-data/preprocessing_results4.imzml.txt Sun Aug 29 07:29:04 2021 +0000 |
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| @@ -1,4 +1,4 @@ imzML file: total 84 --rw-rw-r-- 1 meli meli 62696 Oct 5 19:58 ibd --rw-rw-r-- 1 meli meli 18199 Oct 5 19:58 imzml +-rw-rw-r-- 1 meli meli 62696 Aug 28 16:41 ibd +-rw-rw-r-- 1 meli meli 18200 Aug 28 16:41 imzml |
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| diff -r e988563cc6e5 -r aad328eb6c0f test-data/preprocessing_results4.pdf |
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| Binary file test-data/preprocessing_results4.pdf has changed |