| Previous changeset 4:736b8f6ee456 (2018-08-22) Next changeset 6:cb1e251cac37 (2021-11-23) |
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Commit message:
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/fastx_toolkit/fastx_clipper commit 4c002e52261da2e7609735883d91fa1610ce6ce7" |
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modified:
fastx_clipper.xml macros.xml |
| b |
| diff -r 736b8f6ee456 -r b8658f852bc7 fastx_clipper.xml --- a/fastx_clipper.xml Wed Aug 22 11:05:15 2018 -0400 +++ b/fastx_clipper.xml Thu Jan 30 13:30:10 2020 -0500 |
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| @@ -1,20 +1,21 @@ -<tool id="cshl_fastx_clipper" name="Clip" version="1.0.3"> +<tool id="cshl_fastx_clipper" name="Clip" version="1.0.3+galaxy0"> <description>adapter sequences</description> <macros> <import>macros.xml</import> </macros> - <expand macro="requirements" /> + <expand macro="requirements"> + <requirement type="package" version="1.0.8">bzip2</requirement> + </expand> <command detect_errors="exit_code"><![CDATA[ @CATS@ fastx_clipper -l $minlength -a '$clip_source.clip_sequence' -d $keepdelta --o '$output' -v $KEEP_N $DISCARD_OPTIONS @FQQUAL@ -@GZIP@ +@GZIP@ > '$output' ]]></command> <inputs> |
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| diff -r 736b8f6ee456 -r b8658f852bc7 macros.xml --- a/macros.xml Wed Aug 22 11:05:15 2018 -0400 +++ b/macros.xml Thu Jan 30 13:30:10 2020 -0500 |
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| @@ -21,7 +21,9 @@ <token name="@GZIP@"> <![CDATA[ #if $input.is_of_type('fasta.gz', 'fastqsanger.gz', 'fastqsolexa.gz', 'fastqillumina.gz'): - -z + | gzip -c + #elif $input.is_of_type('fastqsanger.bz2', 'fastqsolexa.bz2', 'fastqillumina.bz2'): + | bzip2 -c #end if ]]> </token> |