Repository 'xcms_retcor'
hg clone https://toolshed.g2.bx.psu.edu/repos/lecorguille/xcms_retcor

Changeset 19:9784ec912994 (2019-04-29)
Previous changeset 18:62171c2b2834 (2019-04-09) Next changeset 20:c914743e3f2f (2019-04-30)
Commit message:
planemo upload for repository https://github.com/workflow4metabolomics/xcms commit a5136bfc124956893f4f0c91808d1c0d78c4ea01
modified:
lib.r
b
diff -r 62171c2b2834 -r 9784ec912994 lib.r
--- a/lib.r Tue Apr 09 12:21:38 2019 -0400
+++ b/lib.r Mon Apr 29 06:29:48 2019 -0400
[
@@ -333,7 +333,7 @@
     files[exists] <- sub("//","/",files[exists])
 
     # WHAT IS ON THE FILESYSTEM
-    filesystem_filepaths <- system(paste0("find \"$PWD/",directory,"\" -not -name '\\.*' -not -path '*conda-env*' -type f -name \"*\""), intern=T)
+    filesystem_filepaths <- system(paste0("find \"",getwd(),"/",directory,"\" -not -name '\\.*' -not -path '*conda-env*' -type f -name \"*\""), intern=T)
     filesystem_filepaths <- filesystem_filepaths[grep(filepattern, filesystem_filepaths, perl=T)]
 
     # COMPARISON