| Previous changeset 4:e78e25d3b4bd (2022-05-31) |
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Commit message:
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/antismash commit dc45770442ff516d6f3733e4bdb284be3163de67 |
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modified:
antismash.xml macros.xml |
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added:
harmonize2antismash.py test-data/harmonize.json test-data/index.4.html test-data/index.5.html test-data/sideload.json |
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| diff -r e78e25d3b4bd -r bc88856eddab antismash.xml --- a/antismash.xml Tue May 31 14:04:07 2022 +0000 +++ b/antismash.xml Tue Jul 05 10:37:38 2022 +0000 |
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| @@ -23,6 +23,13 @@ ln -s $genefinding_gff3 annotation.gff3 && #end if + #if $sideload.file + #if $sideload.format == 'harmonize' + python '$__tool_directory__/harmonize2antismash.py' '$sideload.file' sideload.json && + #else + ln -s '$sideload.file' sideload.json && + #end if + #end if ## create html folder mkdir -p '$htmloutputfolder' && @@ -62,6 +69,10 @@ --rre-cutoff $advanced_options.rre_cutoff --rre-minlength $advanced_options.rre_minlength + #if $sideload.file + --sideload 'sideload.json' + #end if + input_tempfile.$file_extension && ## copy all content to html folder @@ -149,6 +160,14 @@ <param argument="--rre-minlength" type="integer" min="0" max="100" value="50" label="RRE minlength" help="Minimum amino acid length of RRE domains. Default: 50" /> </section> + <section name="sideload" title="Sideloading" help="Sideloading allows you to load external datasets into AntiSMASH"> + <param argument="--sideload" name="file" type="data" format="json" optional="true" label="sideload json file" help="Sideload json file to add to your report" /> + <param name="format" type="select" label="Sideload Format"> + <option value="harmonize">hAMRonize summarize JSON</option> + <option value="native">AntiSMASH JSON</option> + </param> + </section> + <param name="outputs" type="select" multiple="true" label="Outputs"> <option value="html" selected="True">HTML file</option> <option value="all">All results</option> @@ -236,6 +255,23 @@ </output> </test> + <test expect_num_outputs="1"> + <param name="infile" value="sequence.fasta"/> + <section name="sideload"> + <param name="format" value="native"/> + <param name="file" value="sideload.json"/> + </section> + <output name="html" file="index.4.html"/> + </test> + + <test expect_num_outputs="1"> + <param name="infile" value="sequence.fasta"/> + <section name="sideload"> + <param name="format" value="harmonize"/> + <param name="file" value="harmonize.json"/> + </section> + <output name="html" file="index.5.html"/> + </test> </tests> <help> <![CDATA[ |
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| diff -r e78e25d3b4bd -r bc88856eddab harmonize2antismash.py --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/harmonize2antismash.py Tue Jul 05 10:37:38 2022 +0000 |
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| @@ -0,0 +1,50 @@ +#!/usr/bin/env python +import json +import sys + + +output = { + "tool": { + "name": "hAMRonize", + "version": "?", + "description": "Tool for combining results", + "configuration": { + "verbose": "true", "multisetting": ["first", "second"] + }, + }, + "records": [], +} + +with open(sys.argv[1], "r") as handle: + records = json.load(handle) + + for i in records: + start = i["input_gene_start"] + end = i["input_gene_stop"] + label = i["gene_name"] + seqid = i["input_sequence_id"] + + score = i["sequence_identity"] + if start <= end: + fstart = start - 1 + fend = end + else: + fstart = end - 1 + fend = start + + record = { + "name": seqid, + "subregions": [ + { + "start": fstart, + "end": fend, + "label": label, + "details": {"score": str(score)}, + } + ], + } + output["records"].append(record) + + +with open(sys.argv[2], "w") as handle: + json.dump(output, handle, indent=2) |
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| diff -r e78e25d3b4bd -r bc88856eddab macros.xml --- a/macros.xml Tue May 31 14:04:07 2022 +0000 +++ b/macros.xml Tue Jul 05 10:37:38 2022 +0000 |
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| @@ -1,6 +1,6 @@ <macros> <token name="@TOOL_VERSION@">6.1.1</token> - <token name="@VERSION_SUFFIX@">0</token> + <token name="@VERSION_SUFFIX@">1</token> <xml name="requirements"> <requirements> <requirement type="package" version="@TOOL_VERSION@">antismash</requirement> |
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| diff -r e78e25d3b4bd -r bc88856eddab test-data/harmonize.json --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/harmonize.json Tue Jul 05 10:37:38 2022 +0000 |
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| @@ -0,0 +1,64 @@ +[ + { + "input_file_name": "ARBH01000003.1", + "gene_symbol": "mecA_6", + "gene_name": "mecA", + "reference_database_id": "resfinder", + "reference_database_version": 1, + "reference_accession": "BX571856", + "analysis_software_name": "abricate", + "analysis_software_version": 0.5, + "sequence_identity": 100, + "input_sequence_id": "ARBH01000003.1", + "input_protein_start": null, + "input_protein_stop": null, + "input_gene_start": 2, + "input_gene_stop": 3500, + "reference_protein_start": null, + "reference_protein_stop": null, + "reference_gene_start": null, + "reference_gene_stop": null, + "strand_orientation": "-", + "coverage_depth": null, + "coverage_percentage": 100, + "coverage_ratio": null, + "reference_gene_length": null, + "reference_protein_length": null, + "input_gene_length": null, + "input_protein_length": null, + "drug_class": "Amoxicillin;Amoxicillin+Clavulanic_acid;Ampicillin;Ampicillin+Clavulanic_acid;Cefepime;Cefixime;Cefotaxime;Cefoxitin;Ceftazidime;Ertapenem;Imipenem;Meropenem;Piperacillin;Piperacillin+Tazobactam", + "antimicrobial_agent": null, + "resistance_mechanism": null + }, + { + "input_file_name": "ARBH01000003.1", + "gene_symbol": "mecA", + "gene_name": "mecA", + "reference_database_id": "resfinder", + "reference_database_version": 1, + "reference_accession": "BX571856", + "analysis_software_name": "staramr", + "analysis_software_version": 0.5, + "sequence_identity": 100, + "input_sequence_id": "ARBH01000003.1", + "input_protein_start": null, + "input_protein_stop": null, + "input_gene_start": 2, + "input_gene_stop": 3500, + "reference_protein_start": null, + "reference_protein_stop": null, + "reference_gene_start": null, + "reference_gene_stop": null, + "strand_orientation": null, + "coverage_depth": null, + "coverage_percentage": 100, + "coverage_ratio": 1, + "reference_gene_length": null, + "reference_protein_length": null, + "input_gene_length": null, + "input_protein_length": null, + "drug_class": "unknown[mecA_6_BX571856]", + "antimicrobial_agent": null, + "resistance_mechanism": null + } +] |
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| diff -r e78e25d3b4bd -r bc88856eddab test-data/index.4.html --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/index.4.html Tue Jul 05 10:37:38 2022 +0000 |
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| b'@@ -0,0 +1,459 @@\n+\n+<!doctype html>\n+<html lang="en">\n+<head>\n+ <meta charset="utf-8" />\n+ <title>input_tempfile - 1 region(s) - antiSMASH results</title>\n+ <style>img {width: 20px; height: 20px;}</style>\n+ <link rel="stylesheet" type="text/css" href="css/bacteria.css">\n+ <meta property="og:title" content="input_tempfile - 1 record(s) - 1 region(s)" />\n+ <meta property="og:description" content="">\n+ <meta property="og:image" content="https://antismash.secondarymetabolites.org/images/bacteria_logo.png" />\n+ <meta property="og:image:alt" content="antiSMASH logo" />\n+ <meta property="og:image:width" content="600" />\n+ <meta property="og:image:height" content="600" />\n+ <meta property="og:url" content="https://antismash.secondarymetabolites.org/upload/input_tempfile/index.html" />\n+ <meta property="og:type" content="website" />\n+ <meta name="twitter:card" content="summary" />\n+ <meta name="twitter:site" content="@antismash_dev" />\n+</head>\n+\n+<body>\n+ <div id="header">\n+ <nav>\n+ <div class="main-link">\n+ <div>\n+ <a href="https://antismash.secondarymetabolites.org/">\n+ <img src="images/bacteria_antismash_logo.svg" alt="antiSMASH logo" style="width:40px;height:unset;">\n+ </a>\n+ </div>\n+ <div>\n+ <a href="https://antismash.secondarymetabolites.org/">\n+ antiSMASH version 6.1.1\n+ </a>\n+ </div>\n+ </div>\n+ <div class="custom-description"></div>\n+ <div class="ancillary-links">\n+ <div class="ancillary-link dropdown-menu" id="download-dropdown"><a href="#" id="download-dropdown-link"><img src="images/download.svg" alt="download"> Download</a>\n+ <ul class="dropdown-options">\n+ \n+ <li><a href="input_tempfile.zip">Download all results</a></li>\n+ \n+ <li><a href="input_tempfile.gbk">Download GenBank summary file</a></li>\n+ \n+ </ul>\n+ </div>\n+ <div class="ancillary-link"><a href="https://antismash.secondarymetabolites.org/#!/about"><img src="images/about.svg" alt="about"> About</a></div>\n+ <div class="ancillary-link"><a href="https://docs.antismash.secondarymetabolites.org/"><img src="images/help.svg" alt="help"> Help</a></div>\n+ <div class="ancillary-link"><a href="https://antismash.secondarymetabolites.org/#!/contact"><img src="images/contact.svg" alt="contact"> Contact</a></div>\n+ </div>\n+ </nav>\n+ <div id="buttons">\n+ <span id="region-type">Select genomic region:</span>\n+ <div id="regionbuttons">\n+ <div class="arrow-left" id="prev-region"></div>\n+ <div class="regbutton" style="min-width: inherit;"><a href="#">Overview</a></div>\n+ <div style="display: flex; flex-wrap: wrap">\n+ \n+ \n+ <div class="regbutton hybrid r1c1">\n+ <a href="#r1c1">1.1</a>\n+ </div>\n+ \n+ \n+ </div>\n+ <div id="last-regbutton"><div class="arrow-right" id="next-region"></div></div>\n+ </div>\n+ </div>\n+ </div>\n+\n+ <!-- overview page -->\n+ \n+ <div class="page" id="overview">\n+ \n+ \n+ <h3>Identified secondary metabolite regions using strictness 'relaxed'<span id="truncated"></span></h3>\n+ \n+ <div class="overview-layout">\n+ <div id="record-tables">\n+ <div id="single-record-tables">\n+ <div class="record-overview-header">\n+ <strong>ARBH01000003.1</strong>\n+ <div class="download-container">\n+ <div class="download-icon-inverse download-svg" data-tag="record-minimap-1" data-filename="ARBH01000003.1_overview.svg">\n+ </div>\n+ </div>\n+ </div>\n+ <div class="record-overview-details">\n+ <svg id="record-minimap-1" class="record-overview-svg" height="1" width="1"></svg>\n+ <table class="region-table">\n+ <thead>\n+ <tr>\n+ <th>Region</th>\n+ <th>Type</th>\n+ <th>From</th>\n+ <th>To</th>\n+ <th colspan="2">Most similar known cluster</th>\n+ <th>Similarity</th>\n+ </tr>\n+ <'..b'load-svg" data-tag="r1c1-details-svg" data-filename="ARBH01000003.1_r1c1_nrps_pks.svg">\n+ </div>\n+ </div>\n+ </div>\n+ <div class="nrps-pks-domain-buttons">\n+ <div class="domains-selected-only switch-container"><span class="switch-desc">Selected features only</span> <label class="switch"> <input class="domains-selected-only" type="checkbox"> <span class="slider"></span> </label></div>\n+ <div class="show-module-domains switch-container"><span class="switch-desc">Show module domains</span> <label class="switch"> <input class="show-module-domains" type="checkbox"> <span class="slider"></span> </label></div>\n+ </div>\n+ <div class="details-svg" id="r1c1-details-svg"></div>\n+</div>\n+ </div>\n+ \n+ \n+ \n+ <div class="body-details-section r1c1-knownclusterblast">\n+ <div class = "knownclusterblast">\n+ <div class="heading">\n+ <span>Similar known gene clusters</span>\n+ <div class="help-container"> <div class="help-icon" data-id="cb-known-help-3"></div> <span class="help-tooltip" id="cb-known-help-3">Shows clusters from the MiBIG database that are similar to the current region. Genes marked with the same colour are interrelated. White genes have no relationship.<br>Click on reference genes to show details of similarities to genes within the current region.<br>Click on an accession to open that entry in the MiBIG database.</span></div>\n+ </div>\n+ \n+ <div>\n+ <p>No matches found.</p>\n+ </div>\n+ \n+</div>\n+ </div>\n+ \n+ <div class="body-details-section r1c1-subclusterblast">\n+ <div class = "subclusterblast">\n+ <div class="heading">\n+ <span>Similar subclusters</span>\n+ <div class="help-container"> <div class="help-icon" data-id="cb-sub-help-4"></div> <span class="help-tooltip" id="cb-sub-help-4">Shows sub-cluster units that are similar to the current region. Genes marked with the same colour are interrelated. White genes have no relationship.<br>Click on reference genes to show details of similarities to genes within the current region.</span></div>\n+ </div>\n+ \n+ <div>\n+ <p>No matches found.</p>\n+ </div>\n+ \n+</div>\n+ </div>\n+ \n+ \n+ \n+ \n+ </div>\n+\n+ <div class="sidepanel">\n+ <div class="sidepanel-details-headers">\n+ \n+ \n+ \n+ \n+ \n+ \n+ \n+ \n+ \n+ </div>\n+ \n+ \n+ \n+ \n+ \n+ \n+ \n+ \n+ \n+ </div>\n+\n+ </div>\n+\n+</div>\n+\n+\n+ <footer class="footer">\n+ <div class="container">\n+ <div>\n+ <img src="images/bacteria_antismash_logo.svg" style="height:90px;width:unset;">\n+ </div>\n+ <div class="cite-me">\n+ If you have found antiSMASH useful, please <a href="https://antismash.secondarymetabolites.org/#!/about">cite us</a>.\n+ </div>\n+ <div>\n+ <img src="images/bacteria_antismash_icon.svg" style="height:100px;width:unset;">\n+ </div>\n+ </div>\n+ </footer>\n+\n+ <script src="js/jquery.js"></script>\n+ <script src="js/antismash.js"></script>\n+ <script src="regions.js"></script>\n+ <script>\n+ $(document).ready(function() {\n+ viewer["start"](all_regions, details_data, resultsData, recordData);\n+ })\n+ </script>\n+\n+<svg xmlns="http://www.w3.org/2000/svg" version="1.1" xmlns:xlink="http://www.w3.org/1999/xlink">\n+ <defs>\n+ <filter id="inset-shadow">\n+ <feOffset dx="-2" dy="-2"></feOffset>\n+ <feGaussianBlur result="offset-blur" stdDeviation="2"></feGaussianBlur>\n+ <feComposite operator="out" in="SourceGraphic" in2="offset-blur" result="inverse"></feComposite>\n+ <feFlood flood-color="black" result="color" flood-opacity="1"></feFlood>\n+ <feComposite operator="in" in="color" in2="inverse" result="shadow"></feComposite>\n+ <feComponentTransfer in="shadow" result="shadow">\n+ <feFuncA type="linear" slope=".95"></feFuncA>\n+ </feComponentTransfer>\n+ <feComposite operator="over" in="shadow" in2="SourceGraphic"></feComposite>\n+ </filter>\n+ </defs>\n+</svg>\n+</body>\n+</html>\n\\ No newline at end of file\n' |
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| diff -r e78e25d3b4bd -r bc88856eddab test-data/index.5.html --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/index.5.html Tue Jul 05 10:37:38 2022 +0000 |
| [ |
| b'@@ -0,0 +1,459 @@\n+\n+<!doctype html>\n+<html lang="en">\n+<head>\n+ <meta charset="utf-8" />\n+ <title>input_tempfile - 1 region(s) - antiSMASH results</title>\n+ <style>img {width: 20px; height: 20px;}</style>\n+ <link rel="stylesheet" type="text/css" href="css/bacteria.css">\n+ <meta property="og:title" content="input_tempfile - 1 record(s) - 1 region(s)" />\n+ <meta property="og:description" content="">\n+ <meta property="og:image" content="https://antismash.secondarymetabolites.org/images/bacteria_logo.png" />\n+ <meta property="og:image:alt" content="antiSMASH logo" />\n+ <meta property="og:image:width" content="600" />\n+ <meta property="og:image:height" content="600" />\n+ <meta property="og:url" content="https://antismash.secondarymetabolites.org/upload/input_tempfile/index.html" />\n+ <meta property="og:type" content="website" />\n+ <meta name="twitter:card" content="summary" />\n+ <meta name="twitter:site" content="@antismash_dev" />\n+</head>\n+\n+<body>\n+ <div id="header">\n+ <nav>\n+ <div class="main-link">\n+ <div>\n+ <a href="https://antismash.secondarymetabolites.org/">\n+ <img src="images/bacteria_antismash_logo.svg" alt="antiSMASH logo" style="width:40px;height:unset;">\n+ </a>\n+ </div>\n+ <div>\n+ <a href="https://antismash.secondarymetabolites.org/">\n+ antiSMASH version 6.1.1\n+ </a>\n+ </div>\n+ </div>\n+ <div class="custom-description"></div>\n+ <div class="ancillary-links">\n+ <div class="ancillary-link dropdown-menu" id="download-dropdown"><a href="#" id="download-dropdown-link"><img src="images/download.svg" alt="download"> Download</a>\n+ <ul class="dropdown-options">\n+ \n+ <li><a href="input_tempfile.zip">Download all results</a></li>\n+ \n+ <li><a href="input_tempfile.gbk">Download GenBank summary file</a></li>\n+ \n+ </ul>\n+ </div>\n+ <div class="ancillary-link"><a href="https://antismash.secondarymetabolites.org/#!/about"><img src="images/about.svg" alt="about"> About</a></div>\n+ <div class="ancillary-link"><a href="https://docs.antismash.secondarymetabolites.org/"><img src="images/help.svg" alt="help"> Help</a></div>\n+ <div class="ancillary-link"><a href="https://antismash.secondarymetabolites.org/#!/contact"><img src="images/contact.svg" alt="contact"> Contact</a></div>\n+ </div>\n+ </nav>\n+ <div id="buttons">\n+ <span id="region-type">Select genomic region:</span>\n+ <div id="regionbuttons">\n+ <div class="arrow-left" id="prev-region"></div>\n+ <div class="regbutton" style="min-width: inherit;"><a href="#">Overview</a></div>\n+ <div style="display: flex; flex-wrap: wrap">\n+ \n+ \n+ <div class="regbutton PKS T1PKS r1c1">\n+ <a href="#r1c1">1.1</a>\n+ </div>\n+ \n+ \n+ </div>\n+ <div id="last-regbutton"><div class="arrow-right" id="next-region"></div></div>\n+ </div>\n+ </div>\n+ </div>\n+\n+ <!-- overview page -->\n+ \n+ <div class="page" id="overview">\n+ \n+ \n+ <h3>Identified secondary metabolite regions using strictness 'relaxed'<span id="truncated"></span></h3>\n+ \n+ <div class="overview-layout">\n+ <div id="record-tables">\n+ <div id="single-record-tables">\n+ <div class="record-overview-header">\n+ <strong>ARBH01000003.1</strong>\n+ <div class="download-container">\n+ <div class="download-icon-inverse download-svg" data-tag="record-minimap-1" data-filename="ARBH01000003.1_overview.svg">\n+ </div>\n+ </div>\n+ </div>\n+ <div class="record-overview-details">\n+ <svg id="record-minimap-1" class="record-overview-svg" height="1" width="1"></svg>\n+ <table class="region-table">\n+ <thead>\n+ <tr>\n+ <th>Region</th>\n+ <th>Type</th>\n+ <th>From</th>\n+ <th>To</th>\n+ <th colspan="2">Most similar known cluster</th>\n+ <th>Similarity</th>\n+ </tr>\n'..b'load-svg" data-tag="r1c1-details-svg" data-filename="ARBH01000003.1_r1c1_nrps_pks.svg">\n+ </div>\n+ </div>\n+ </div>\n+ <div class="nrps-pks-domain-buttons">\n+ <div class="domains-selected-only switch-container"><span class="switch-desc">Selected features only</span> <label class="switch"> <input class="domains-selected-only" type="checkbox"> <span class="slider"></span> </label></div>\n+ <div class="show-module-domains switch-container"><span class="switch-desc">Show module domains</span> <label class="switch"> <input class="show-module-domains" type="checkbox"> <span class="slider"></span> </label></div>\n+ </div>\n+ <div class="details-svg" id="r1c1-details-svg"></div>\n+</div>\n+ </div>\n+ \n+ \n+ \n+ <div class="body-details-section r1c1-knownclusterblast">\n+ <div class = "knownclusterblast">\n+ <div class="heading">\n+ <span>Similar known gene clusters</span>\n+ <div class="help-container"> <div class="help-icon" data-id="cb-known-help-3"></div> <span class="help-tooltip" id="cb-known-help-3">Shows clusters from the MiBIG database that are similar to the current region. Genes marked with the same colour are interrelated. White genes have no relationship.<br>Click on reference genes to show details of similarities to genes within the current region.<br>Click on an accession to open that entry in the MiBIG database.</span></div>\n+ </div>\n+ \n+ <div>\n+ <p>No matches found.</p>\n+ </div>\n+ \n+</div>\n+ </div>\n+ \n+ <div class="body-details-section r1c1-subclusterblast">\n+ <div class = "subclusterblast">\n+ <div class="heading">\n+ <span>Similar subclusters</span>\n+ <div class="help-container"> <div class="help-icon" data-id="cb-sub-help-4"></div> <span class="help-tooltip" id="cb-sub-help-4">Shows sub-cluster units that are similar to the current region. Genes marked with the same colour are interrelated. White genes have no relationship.<br>Click on reference genes to show details of similarities to genes within the current region.</span></div>\n+ </div>\n+ \n+ <div>\n+ <p>No matches found.</p>\n+ </div>\n+ \n+</div>\n+ </div>\n+ \n+ \n+ \n+ \n+ </div>\n+\n+ <div class="sidepanel">\n+ <div class="sidepanel-details-headers">\n+ \n+ \n+ \n+ \n+ \n+ \n+ \n+ \n+ \n+ </div>\n+ \n+ \n+ \n+ \n+ \n+ \n+ \n+ \n+ \n+ </div>\n+\n+ </div>\n+\n+</div>\n+\n+\n+ <footer class="footer">\n+ <div class="container">\n+ <div>\n+ <img src="images/bacteria_antismash_logo.svg" style="height:90px;width:unset;">\n+ </div>\n+ <div class="cite-me">\n+ If you have found antiSMASH useful, please <a href="https://antismash.secondarymetabolites.org/#!/about">cite us</a>.\n+ </div>\n+ <div>\n+ <img src="images/bacteria_antismash_icon.svg" style="height:100px;width:unset;">\n+ </div>\n+ </div>\n+ </footer>\n+\n+ <script src="js/jquery.js"></script>\n+ <script src="js/antismash.js"></script>\n+ <script src="regions.js"></script>\n+ <script>\n+ $(document).ready(function() {\n+ viewer["start"](all_regions, details_data, resultsData, recordData);\n+ })\n+ </script>\n+\n+<svg xmlns="http://www.w3.org/2000/svg" version="1.1" xmlns:xlink="http://www.w3.org/1999/xlink">\n+ <defs>\n+ <filter id="inset-shadow">\n+ <feOffset dx="-2" dy="-2"></feOffset>\n+ <feGaussianBlur result="offset-blur" stdDeviation="2"></feGaussianBlur>\n+ <feComposite operator="out" in="SourceGraphic" in2="offset-blur" result="inverse"></feComposite>\n+ <feFlood flood-color="black" result="color" flood-opacity="1"></feFlood>\n+ <feComposite operator="in" in="color" in2="inverse" result="shadow"></feComposite>\n+ <feComponentTransfer in="shadow" result="shadow">\n+ <feFuncA type="linear" slope=".95"></feFuncA>\n+ </feComponentTransfer>\n+ <feComposite operator="over" in="shadow" in2="SourceGraphic"></feComposite>\n+ </filter>\n+ </defs>\n+</svg>\n+</body>\n+</html>\n\\ No newline at end of file\n' |
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| diff -r e78e25d3b4bd -r bc88856eddab test-data/sideload.json --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/sideload.json Tue Jul 05 10:37:38 2022 +0000 |
| [ |
| @@ -0,0 +1,40 @@ +{ + "tool": { + "name": "Example tool", + "version": "1.2.3", + "description": "Example of external result sideloading in antiSMASH", + "configuration": { + "verbose": "true", + "multisetting": [ + "first", + "second" + ] + } + }, + "records": [ + { + "name": "ARBH01000003.1", + "subregions": [ + { + "start": 2, + "end": 3500, + "label": "dhpg biosynthesis", + "details": { + "score": "6.5" + } + } + ], + "protoclusters": [ + { + "core_start": 2, + "core_end": 3500, + "product": "bht", + "details": { + "score": "6.5", + "some_option_name": "no" + } + } + ] + } + ] +} |