Repository 'minimap2'
hg clone https://toolshed.g2.bx.psu.edu/repos/iuc/minimap2

Changeset 2:4070f129540a (2017-11-08)
Previous changeset 1:b103bc946f57 (2017-11-08) Next changeset 3:1650a97189be (2017-11-17)
Commit message:
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/minimap2 commit 79e4c4d7182a4d3f7b6d9a7e444a2bb34be588c0
modified:
minimap2.xml
b
diff -r b103bc946f57 -r 4070f129540a minimap2.xml
--- a/minimap2.xml Wed Nov 08 10:02:24 2017 -0500
+++ b/minimap2.xml Wed Nov 08 16:48:49 2017 -0500
b
@@ -1,5 +1,5 @@
 <?xml version="1.0"?>
-<tool id="minimap2" name="Map with minimap2" version="2.4" profile="17.01">
+<tool id="minimap2" name="Map with minimap2" version="2.4.1" profile="17.01">
     <description>A fast pairwise aligner for genomic and spliced nucleotide sequences</description>
     <requirements>
         <requirement type="package" version="2.4">minimap2</requirement>
@@ -106,6 +106,7 @@
     -O $io_options.output_format
     #if $io_options.output_format == 'CRAM':
         --reference reference.fa
+        --output-fmt-option no_ref
     #end if
     -o '$alignment_output'
 ]]>