| Previous changeset 7:cdbdce00f5f6 (2020-09-30) Next changeset 9:ee86b27291b5 (2022-01-20) |
|
Commit message:
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/crossmap commit f436317e2f8d451621e297cfc474e43c20d60bb7" |
|
modified:
crossmap_bed.xml macros.xml test-data/test_bam_01_output_a.bam test-data/test_bed_02_output_a__all.bed test-data/test_bed_02_output_a__only_fails.bed test-data/test_bigwig_01_output_a.bw |
|
added:
test-data/test_region.bed |
| b |
| diff -r cdbdce00f5f6 -r f4a70882a71b crossmap_bed.xml --- a/crossmap_bed.xml Wed Sep 30 14:00:40 2020 +0000 +++ b/crossmap_bed.xml Thu Jul 15 16:19:05 2021 +0000 |
| b |
| @@ -1,4 +1,4 @@ -<tool id="crossmap_bed" name="CrossMap BED" version="@WRAPPER_VERSION@"> +<tool id="crossmap_bed" name="CrossMap BED" version="@TOOL_VERSION@+galaxy@VERSION_SUFFIX@" profile="20.05"> <description>Convert genome coordinates or annotation files between genome assemblies</description> <macros> <import>macros.xml</import> |
| b |
| diff -r cdbdce00f5f6 -r f4a70882a71b macros.xml --- a/macros.xml Wed Sep 30 14:00:40 2020 +0000 +++ b/macros.xml Thu Jul 15 16:19:05 2021 +0000 |
| b |
| @@ -6,8 +6,8 @@ <yield/> </requirements> </xml> - <token name="@TOOL_VERSION@">0.3.7</token> - <token name="@WRAPPER_VERSION@">@TOOL_VERSION@+galaxy1</token> + <token name="@TOOL_VERSION@">0.5.2</token> + <token name="@VERSION_SUFFIX@">0</token> <xml name="stdio"> <stdio> <regex match="Aborted (core dumped)" source="stdout" level="fatal"/> |
| b |
| diff -r cdbdce00f5f6 -r f4a70882a71b test-data/test_bam_01_output_a.bam |
| b |
| Binary file test-data/test_bam_01_output_a.bam has changed |
| b |
| diff -r cdbdce00f5f6 -r f4a70882a71b test-data/test_bed_02_output_a__all.bed --- a/test-data/test_bed_02_output_a__all.bed Wed Sep 30 14:00:40 2020 +0000 +++ b/test-data/test_bed_02_output_a__all.bed Thu Jul 15 16:19:05 2021 +0000 |
| b |
| @@ -1,5 +1,5 @@ -chr1 100 10000 Fail -chr2 100 10000 Fail -chr3 100 10000 Fail -chr4 8941700 8947200 Fail -chr5 1 100000000 Fail +chr1 100 10000 Unmap +chr2 100 10000 Unmap +chr3 100 10000 Unmap +chr4 8941700 8947200 Unmap +chr5 1 100000000 Unmap |
| b |
| diff -r cdbdce00f5f6 -r f4a70882a71b test-data/test_bed_02_output_a__only_fails.bed --- a/test-data/test_bed_02_output_a__only_fails.bed Wed Sep 30 14:00:40 2020 +0000 +++ b/test-data/test_bed_02_output_a__only_fails.bed Thu Jul 15 16:19:05 2021 +0000 |
| b |
| @@ -1,5 +1,5 @@ -chr1 100 10000 -chr2 100 10000 -chr3 100 10000 -chr4 8941700 8947200 -chr5 1 100000000 +chr1 100 10000 Unmap +chr2 100 10000 Unmap +chr3 100 10000 Unmap +chr4 8941700 8947200 Unmap +chr5 1 100000000 Unmap |
| b |
| diff -r cdbdce00f5f6 -r f4a70882a71b test-data/test_bigwig_01_output_a.bw |
| b |
| Binary file test-data/test_bigwig_01_output_a.bw has changed |
| b |
| diff -r cdbdce00f5f6 -r f4a70882a71b test-data/test_region.bed --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/test_region.bed Thu Jul 15 16:19:05 2021 +0000 |
| b |
| @@ -0,0 +1,2 @@ +chr2 90000 990000 map_ratio=1.0000 +chr3 75000 975000 map_ratio=1.0000 |