| Previous changeset 10:bc108981ca68 (2019-09-26) Next changeset 12:6eaf0f9836c8 (2022-03-22) |
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Commit message:
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stacks commit 2b0a6546733e3e090b19e83f4a8b87e09bb11424" |
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modified:
stacks_assembleperead.xml |
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| diff -r bc108981ca68 -r 0c741f364d18 stacks_assembleperead.xml --- a/stacks_assembleperead.xml Thu Sep 26 10:22:48 2019 -0400 +++ b/stacks_assembleperead.xml Sun Jan 19 06:37:54 2020 -0500 |
| [ |
| @@ -1,16 +1,14 @@ -<tool id="stacks_assembleperead" name="Stacks: assemble read pairs by locus" version="@WRAPPER_VERSION@.0"> +<tool id="stacks_assembleperead" name="Stacks: assemble read pairs by locus" version="@WRAPPER_VERSION@.1"> <description>run the STACKS sort_read_pairs.pl and exec_velvet.pl wrappers</description> <macros> <import>macros.xml</import> </macros> - <expand macro="requirements"/> + <expand macro="requirements" /> <expand macro="stdio"/> <command><![CDATA[ mkdir stacks_inputs reads stacks_outputs - && - #for $input_file in $stacks_col #set $ext = "" #if not str($input_file.element_identifier).endswith('.tsv') @@ -51,7 +49,7 @@ #if $velvet.use_velvet == "yes" ## remove possible empty files - && find stacks_outputs -type f -size 0 -delete + && find stacks_outputs -type f -size 0 -exec rm {} \; && mkdir assembled |