Repository 'cravat_annotate_mutations'
hg clone https://toolshed.g2.bx.psu.edu/repos/in_silico/cravat_annotate_mutations

Changeset 7:1b6e23f3cb06 (2017-07-19)
Previous changeset 6:6f4223b8a428 (2017-07-19) Next changeset 8:4d17381a30de (2018-06-12)
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Uploaded
added:
cravat_annotate_mutations-18ce5c6169ef/cravat_annotate.xml
b
diff -r 6f4223b8a428 -r 1b6e23f3cb06 cravat_annotate_mutations-18ce5c6169ef/cravat_annotate.xml
--- /dev/null Thu Jan 01 00:00:00 1970 +0000
+++ b/cravat_annotate_mutations-18ce5c6169ef/cravat_annotate.xml Wed Jul 19 14:49:54 2017 -0400
[
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+<tool id="cravat_query" name="CRAVAT Query" version="1.0.0">
+    <description>Queries CRAVAT for cancer annotation</description>
+  <command interpreter="python">cravat_annotate.py $input $output</command>
+  <inputs>
+    <param format="tabular" name="input" type="data" label="Source file"/>
+  </inputs>
+  <outputs>
+    <data format="tabular" name="output" />
+  </outputs>
+
+  <tests>
+    <test>
+      <param name="input" value="input_call.txt"/>
+      <output name="output" file="Galaxy23-[CRAVAT_Query_on_data_22].tabular"/>
+    </test>
+  </tests>
+
+  <help>
+ This tool queries CRAVAT for cancer annotation.
+  </help>
+
+</tool>
+