| Previous changeset 0:d348c3a151d9 (2020-02-18) Next changeset 2:85ffb2cc6b64 (2021-09-20) |
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Commit message:
"planemo upload for repository https://gitlab.com/paulklemm_PHD/proteinortho commit 95f1ae4ed1cdd56114df76d215f9e1ed549aa4c5" |
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modified:
proteinortho_grab_proteins.xml proteinortho_macros.xml |
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| diff -r d348c3a151d9 -r fa2d1e652ec1 proteinortho_grab_proteins.xml --- a/proteinortho_grab_proteins.xml Tue Feb 18 17:57:53 2020 -0500 +++ b/proteinortho_grab_proteins.xml Tue Sep 14 11:39:49 2021 +0000 |
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| @@ -1,4 +1,4 @@ -<tool id="proteinortho_grab_proteins" name="Proteinortho grab proteins" version="@TOOL_VERSION@+galaxy@WRAPPER_VERSION@"> +<tool id="proteinortho_grab_proteins" name="Proteinortho grab proteins" version="@TOOL_VERSION@+galaxy@WRAPPER_VERSION@" profile="@PROFLE@"> <description>finds genes/proteins in a given fasta file</description> <macros> <import>proteinortho_macros.xml</import> @@ -53,6 +53,10 @@ <add value="\\"/> <add value="_"/> <add value="|"/> + <add value="\t"/> + <add value="	"/> <!-- tab --> + <add value=","/> + <add value=";"/> <add value="["/> <!-- left square bracket, e.g subselecting from vec[1] --> <add value="]"/> <!-- right square bracket --> <add value="("/> <!-- left parenthesis --> |
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| diff -r d348c3a151d9 -r fa2d1e652ec1 proteinortho_macros.xml --- a/proteinortho_macros.xml Tue Feb 18 17:57:53 2020 -0500 +++ b/proteinortho_macros.xml Tue Sep 14 11:39:49 2021 +0000 |
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| @@ -1,7 +1,8 @@ <?xml version="1.0"?> <macros> - <token name="@TOOL_VERSION@">6.0.14</token> - <token name="@WRAPPER_VERSION@">2.9.1</token> + <token name="@TOOL_VERSION@">6.0.31</token> + <token name="@WRAPPER_VERSION@">0</token> + <token name="@PROFILE@">20.09</token> <xml name="citations"> <citations> <citation type="doi">10.1186/1471-2105-12-124</citation> @@ -11,10 +12,12 @@ <xml name="requirements"> <requirements> <requirement type="package" version="@TOOL_VERSION@">proteinortho</requirement> - <requirement type="package">diamond</requirement> - <requirement type="package">blast</requirement> - <requirement type="package">blat</requirement> - <requirement type="package">last</requirement> + <!-- blast, blat, and last are not in the biopython requirements + diamond is, but latest version does not work: https://gitlab.com/paulklemm_PHD/proteinortho/-/issues/55 --> + <requirement type="package" version="2.0.9">diamond</requirement> + <requirement type="package" version="2.12.0">blast</requirement> + <requirement type="package" version="36">blat</requirement> + <requirement type="package" version="1256">last</requirement> </requirements> </xml> <xml name="version_command"> |