| Previous changeset 39:3e38c9b3214f (2021-09-01) Next changeset 41:7ab85ac5f64b (2021-11-04) |
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Commit message:
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bedtools commit 29bd1be4655cd26052095a49a8e188d2572b703b" |
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modified:
getfastaBed.xml nucBed.xml |
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| diff -r 3e38c9b3214f -r a68aa6c1204a getfastaBed.xml --- a/getfastaBed.xml Wed Sep 01 11:04:15 2021 +0000 +++ b/getfastaBed.xml Thu Sep 09 13:04:07 2021 +0000 |
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| @@ -11,13 +11,15 @@ #set $fasta_file = $fasta_source.fasta #else #set $fasta_file = $fasta_source.fasta_id.fields.path + ln -s '${fasta_file}.fai' 'input.fasta.fai' && #end if +ln -s '$fasta_file' 'input.fasta' && bedtools getfasta $name $tab $strand $split --fi '$fasta_file' +-fi 'input.fasta' -bed '$input' -fo '$output' ]]></command> |
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| diff -r 3e38c9b3214f -r a68aa6c1204a nucBed.xml --- a/nucBed.xml Wed Sep 01 11:04:15 2021 +0000 +++ b/nucBed.xml Thu Sep 09 13:04:07 2021 +0000 |
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| @@ -7,6 +7,7 @@ <expand macro="requirements" /> <expand macro="stdio" /> <command><![CDATA[ +ln -s '$fasta' 'input.fasta' && bedtools nuc $s $seq @@ -14,7 +15,7 @@ -pattern '$pattern' $C #end if --fi '$fasta' +-fi 'input.fasta' -bed '$input' > '$output' ]]></command> |