Repository 'salmon_kallisto_mtx_to_10x'
hg clone https://toolshed.g2.bx.psu.edu/repos/ebi-gxa/salmon_kallisto_mtx_to_10x

Changeset 4:050b51d0f3c4 (2019-11-08)
Previous changeset 3:336ae8f0a0b2 (2019-11-08) Next changeset 5:cd6007b47199 (2019-11-08)
Commit message:
planemo upload for repository https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/tree/develop/tools/salmon-kallisto-mtx-to-10x/.shed.yml commit 3fbbd818012005da4513271beda50df98d3c1cde-dirty
modified:
salmonKallistoMtxTo10x.xml
b
diff -r 336ae8f0a0b2 -r 050b51d0f3c4 salmonKallistoMtxTo10x.xml
--- a/salmonKallistoMtxTo10x.xml Fri Nov 08 08:36:12 2019 -0500
+++ b/salmonKallistoMtxTo10x.xml Fri Nov 08 08:42:44 2019 -0500
b
@@ -12,6 +12,7 @@
             matrixfile=matrix.mtx;
         fi;
         ln -s ${mtx_file} \$matrixfile;
+        echo -e $__tool_directory__/salmonKallistoMtxTo10x.py --cell_prefix "${cell_prefix}" "${mtx_file}" "${genes_file}" "${barcodes_file}" ./;
         $__tool_directory__/salmonKallistoMtxTo10x.py --cell_prefix "${cell_prefix}" "${mtx_file}" "${genes_file}" "${barcodes_file}" ./
      ]]></command>