Galaxy |

Changeset 7:60fa6080f86f (2019-11-22)

Previous changeset 6:17f7e1e51fad (2019-11-21) Next changeset 8:5675dc87bb8d (2020-03-04)

Commit message:
planemo upload for repository https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/tree/develop/tools/salmon-kallisto-mtx-to-10x/.shed.yml commit 26982f271bc98aed93b20c68d73ed610ddada16e

modified:
salmonKallistoMtxTo10x.py
salmonKallistoMtxTo10x.xml

added:
barcodes.tsv
foo.mtx/barcodes.tsv
foo.mtx/genes.tsv
foo.mtx/matrix.mtx
genes.tsv
matrix.mtx.gz

diff -r 17f7e1e51fad -r 60fa6080f86f barcodes.tsv
--- /dev/null Thu Jan 01 00:00:00 1970 +0000
+++ b/barcodes.tsv Fri Nov 22 11:11:16 2019 -0500

b'@@ -0,0 +1,41177 @@\n+GTGTGTGTGTGTGTGT\n+ACACACACACACACAC\n+CACACACACACACACA\n+GTGAAGCTTATCAAGA\n+CTCACTTCCTAGATGA\n+GGAAGAAGTGGGGTGG\n+AAGAAGATGGGTGACC\n+GGAAGTGAAGCTTATC\n+GAAGCTTATCAAGAAG\n+GAGGAAGTGAAGCTTA\n+CAAGAAGATGGGTGAC\n+AGCTTATCAAGAAGAT\n+GCTTATCAAGAAGATG\n+AGATGGGTGACCACCT\n+GTGACTTCCTGGAGAC\n+AGAAGATGGGTGACCA\n+GTGAAATCTAGAGTAA\n+AAAGAATTGGGTGACC\n+GTGATAATGAAAGCTA\n+GCCCGAATCTGGCTTG\n+ATCAAGAAGATGGGTG\n+TGGGTGACCACCTGAC\n+AGTGAAGCTTATCAAG\n+CCCGAATCTGGCTTGG\n+GTAAAATCAAGCTGGC\n+AGGAAGTGAAGCTTAT\n+CTTATCAAGAAGATGG\n+ATGAAAGCTAAGCCTC\n+CCTAGATGAGGAAGTG\n+CTTTGACAAGCACACC\n+GAAAGAACTTGCATGT\n+GGAATATCTCTTTGAC\n+AGATGAGGAAGTGAAG\n+GACAAGCACACCCTGG\n+GACCAACTTGCGCAAG\n+GAAAGCTAAGCCTCGG\n+CAGCACTTTGGGAGGC\n+GCGGAATATCTCTTTG\n+GCAAGATGGGAGCGCC\n+GGCTAATTTCCCCATA\n+CTTGCATGTTGGTGAA\n+GTTCTGCCCGCACGGA\n+CCAACTTGCGCAAGAT\n+AAAAAAAAAAAAAAAA\n+GAAGATGGGTGACCAC\n+GGCTTGGCGGAATATC\n+GGCGGAATATCTCTTT\n+GGAAAGAACTTGCATG\n+GACTCACTTCCTAGAT\n+ATCTCTTTGACAAGCA\n+CTGGAGACTCACTTCC\n+GTGACCACGTGACCAA\n+GGTGGAAGAAGTGGGG\n+CCAGCACTTTGGGAGG\n+GAAGGAAGAAGTGGGG\n+ACTTCCTAGATGAGGA\n+GGTGGGACGACAGTGA\n+CCCATCTCTGTGACTT\n+GGTGAAAGCCATCAAA\n+GGAGACTCACTTCCTA\n+GAAGTGAAGCTTATCA\n+CTGTGACTTCCTGGAG\n+TATCAAGAAGATGGGT\n+GCACACCCTGGGAGAC\n+CTGGCTTGGCGGAATA\n+GCCCGCACGGACCCCC\n+CACGTGACCAACTTGC\n+CTTCCTAGATGAGGAA\n+AGCACACCCTGGGAGA\n+GGTGACTTCCCTGGTC\n+GCTTGGCGGAATATCT\n+CTTCCTGGAGACTCAC\n+GCTAAGCCTCGGGCTA\n+GGGAAGGAAAGAACTT\n+GTGAAGGAAGAAGTGG\n+GCCGCGCCTGCCTTTC\n+GAGCGCCCGAATCTGG\n+GGGTGACCACGTGACC\n+AAGTGAAGCTTATCAA\n+GCTAATTTCCCCATAG\n+GAAGAAGTGGGGTGGG\n+GATAATGAAAGCTAAG\n+CAAAGAATTGGGTGAC\n+AAGATGGGTGACCACC\n+GGGAGCGCCCGAATCT\n+GTTCGAGACCAGCCTG\n+GGAAAATTTAGAAATA\n+GGTGAAGGAAGAAGTG\n+GAAGGAAAGAACTTGC\n+GTGGGGTGGAAGAAGT\n+GGTGACCACGTGACCA\n+GACGACAGTGAAATCT\n+CACTTCCTAGATGAGG\n+TCCTAGATGAGGAAGT\n+CTGTAATCCCAGCACT\n+GAATTGGGTGACCACG\n+TGAAGCTTATCAAGAA\n+CTCTTTGACAAGCACA\n+CCCCCATCTCTGTGAC\n+GGACGACAGTGAAATC\n+GTGGGGTGGGACGACA\n+CTTCCCTGGTCACCAA\n+GTGACTTCCCTGGTCA\n+GCCTGTAATCCCAGCA\n+ATGTTGGTGAAGGAAG\n+AAGCCATCAAAGAATT\n+CTGCCCGCACGGACCC\n+GTTTGAGACCAGCCTG\n+GGGGTGGAAGAAGTGG\n+GACTTCCTGGAGACTC\n+GTCTATCTATCTGGCT\n+GAAATCTAGAGTAAAA\n+GTGGAAGAAGTGGGGT\n+GAAGAAGTGGGGTGGA\n+CATCTGTCTATCTATC\n+GTGAAAGCCATCAAAG\n+GGAGCGCCCGAATCTG\n+CAAGCACACCCTGGGA\n+GTTCAAGACCAGCCTG\n+GTGACCAACTTGCGCA\n+GGGAGACAGTGATAAT\n+GCGCAAGATGGGAGCG\n+GGAAGGAAAGAACTTG\n+GTAATCCCAGCACTTT\n+ACTTCCTGGAGACTCA\n+GTTTAAATGACTGTGC\n+GATGGGAGCGCCCGAA\n+CTGGGTTCTGCCCGCA\n+CTTGGCGGAATATCTC\n+CTGGCTGGCAGGGAAG\n+ATCAAAGAATTGGGTG\n+GCCGTGGGGTGACTTC\n+GATGAGGAAGTGAAGC\n+CTTCAATCTCTTGCAC\n+ATGAGGAAGTGAAGCT\n+GAGACAGTGATAATGA\n+GTTAAGCGTGCATAAG\n+GAAAGCCATCAAAGAA\n+GGGACGACAGTGAAAT\n+GTTAACTTCCAATTTA\n+AAAGAATTCACCCCAC\n+GTCAGGAGTTCGAGAC\n+GCCCTGGGTTCTGCCC\n+AAGAAGTGGGGTGGGA\n+GACCACGTGACCAACT\n+AAAGAACTTGCATGTT\n+GGATCTTCATGCCCTG\n+GGAGACAGTGATAATG\n+TTATCAAGAAGATGGG\n+CTAGATGAGGAAGTGA\n+CCTGCCTTTCCCATCT\n+GGCCGCGCCTGCCTTT\n+GGAAGCCCCAACGGGA\n+GATCTTCATGCCCTGG\n+GAACTTGCATGTTGGT\n+GACAGTGATAATGAAA\n+CCTGGAGACTCACTTC\n+AGAACTTGCATGTTGG\n+GTGACTTCATTGAGAC\n+GCCTCGGGCTAATTTC\n+CAGTGATAATGAAAGC\n+GCCATCAAAGAATTGG\n+AGGAAGAAGTGGGGTG\n+GGCAGGGAAGGAAAGA\n+ACTTGCGCAAGATGGG\n+GTCAGATTTGAACTCT\n+CTTGCGCAAGATGGGA\n+CTGGCAGGGAAGGAAA\n+CTAATTTCCCCATAGC\n+CGAATCTGGCTTGGCG\n+GGGCTAATTTCCCCAT\n+GTTGGTGAAGGAAGAA\n+CTATCTATCTGGCTGG\n+AATGAAAGCTAAGCCT\n+AATCCCAGCACTTTGG\n+TTTTTTTTTTTTTTTT\n+GGGAAAATTTAGAAAT\n+GCAAAGAATTCACCCC\n+AAGCTTATCAAGAAGA\n+CTTCAGGCTCCTGGGC\n+CTAAGCCTCGGGCTAA\n+GTGCTGGTCTGTGTGC\n+GGCTGGCAGGGAAGGA\n+ATGGGAGCGCCCGAAT\n+GGCTCATTCATTTCTC\n+GAGACACATTACCTGA\n+CTAGAGTAAAATCAAG\n+GGGTGGAAGAAGTGGG\n+CCCACATTAGGCTTAA\n+CCTGGGTTCTGCCCGC\n+AATTGGGTGACCACGT\n+TGACAAGCACACCCTG\n+GAGCAGGTGAAAGCCA\n+ACAAGCACACCCTGGG\n+GAAGTGGGGTGGGACG\n+ATCTCTGTGACTTCCT\n+AGCTAAGCCTCGGGCT\n+GGTCAGTGGAAGCCCC\n+CTGGGAGACAGTGATA\n+AGTTAACTTCCAATTT\n+GGGGTGGGACGACAGT\n+GTCCTGCAGGCTGTAA\n+GGAAATTTGTTATAAT\n+CCTCGGGCTAATTTCC\n+CAAAGAACTACTGACA\n+TCTTTGACAAGCACAC\n+CCTGAATGAGCAGGTG\n+CCGAATCTGGCTTGGC\n+CCCTGGGAGACAGTGA\n+GGCCCTTTTGGATCTT\n+GACCAGCCTGGCCAAC\n+GAAAAGTCCTAATAGT\n+GACCCCCATCTCTGTG\n+ATCAAGCTGGCCCAAG\n+AGACTCACTTCCTAGA\n+ACTAAAAATACAAAAA\n+GAAGTGGGGTGGAAGA\n+GAAGAATTCACAAAAA\n+ATAGCCGTGGGGTGAC\n+AAATCAAGCTGGCCCA\n+TATCTATCTGGCTGGC\n+'..b'GT\n+AAACTTTCAAATCCTT\n+AAACTTCTTGAATAAA\n+AAACTTCAGTCATGAT\n+AAACTTAGCAACTTGG\n+AAACTGTGTACATAAC\n+AAACTGGTACCCGTTG\n+AAACTGGATACTGCAT\n+AAACTGCTTTTGATCT\n+AAACTGCTGGGGCAAT\n+AAACTGCAGTGTCCGT\n+AAACTGATGTCTTTTC\n+AAACTGAGTACTTGGA\n+AAACTCTGGGCATTTC\n+AAACTCCAGCCCACTG\n+AAACTCATTAGTTTGG\n+AAACTCATACCTGTAT\n+AAACTATTTGTCTTTC\n+AAACTATTTGGGATAT\n+AAACTAGGAGAATGGG\n+AAACTAGATCTAGGAA\n+AAACGTGTTTTTTAAA\n+AAACGTGTGAAGGAAA\n+AAACGTACCCAGGCCC\n+AAACGGGCCCTCAAAT\n+AAACGGATTGGCCTAA\n+AAACGGACTTTTCATT\n+AAACGCAGTGTGGGAA\n+AAACGATTATGTACTC\n+AAACGATGAGACGTGC\n+AAACCTTTTTGTCTTT\n+AAACCTTCAGAAATAG\n+AAACCTTACATGTGTA\n+AAACCTAGGACCAAAG\n+AAACCTACCAAAAAGG\n+AAACCTAAATATTTAC\n+AAACCCTCATTCACAC\n+AAACCCCGATCCTTTG\n+AAACCCCCATAAATAG\n+AAACCCATTATGTAAT\n+AAACCCACATTTAAGG\n+AAACCATCCATCAATT\n+AAACCATCATTCTCAG\n+AAACCAAGCGAGGCCA\n+AAACCAAATCAGTTCT\n+AAACATTTTTGAGATA\n+AAACATTTCAAAGTTT\n+AAACATTTAAATACAA\n+AAACATTCAAGAAAAC\n+AAACATGTGCTGTGTC\n+AAACATGGTGGCCAAA\n+AAACATCTTCTGTAGC\n+AAACATCCACTTAAGT\n+AAACATAACCAGCCAT\n+AAACAGGTGTCAGGCT\n+AAACAGCTTCCTGAAT\n+AAACAGCTGTACTTTT\n+AAACAGCTGGAGGATG\n+AAACAGCTCTACTCCA\n+AAACACTTACTGCCAG\n+AAACACCCTTTGTTGA\n+AAACACAGTGAATTTG\n+AAACACAGCAGTTCTT\n+AAACACAGAACCTCAG\n+AAACACACACCAAACA\n+AAACAATGATTTTAAT\n+AAACAAGACTCCAGTG\n+AAACAACTTCTCAGAT\n+AAACAAATTTGCCGTG\n+AAACAAAGGATCTGGG\n+AAACAAAGACTGGAGA\n+AAACAAACCACCTGAC\n+AAACAAACAGGCCTCT\n+AAACAAACAATCCAGA\n+AAACAAAAAGAGGAGC\n+AAACAAAAACCGGCAC\n+AAACAAAAAAAAAATA\n+AAAATTTTTTTTTTGT\n+AAAATTTTTAGAACTT\n+AAAATTTCCATTGTAG\n+AAAATTTAAATACAAT\n+AAAATTGTGAAAGTAA\n+AAAATTGCACACACTC\n+AAAATTACACCTGGCA\n+AAAATGTTTAAATTAA\n+AAAATGTGACCCACAG\n+AAAATGGTGAAACCCC\n+AAAATGCAAAAATTAG\n+AAAATGATGGCAGTGT\n+AAAATGATCCAGACTA\n+AAAATGATCAAGCCTT\n+AAAATGAATCTTTCAA\n+AAAATCTTTTAATACA\n+AAAATCTTCCAGTTAC\n+AAAATCTGCCACGATT\n+AAAATCGAGCGGGCCA\n+AAAATCCTTTTTTGTA\n+AAAATCCGGGCTGCTG\n+AAAATCCATTTCACTA\n+AAAATCCAGAAGGTAT\n+AAAATCAGCTACTAGA\n+AAAATCAGCCAGGTGT\n+AAAATCAATGTGAAAA\n+AAAATATTTGAAGAAG\n+AAAATAGTAAAATATA\n+AAAATAGCTTTTGCCG\n+AAAATACCAAGTCTCC\n+AAAATACAAAAAAAAA\n+AAAATAATGTGAGGCG\n+AAAATAATGCTGTTCT\n+AAAATAACTTCATTGT\n+AAAATAAAACAATAAA\n+AAAAGTTGTTAAACAA\n+AAAAGTTATTACACTA\n+AAAAGTTATCCTACAC\n+AAAAGTCTCCAGTCTG\n+AAAAGTAGTAAATAGT\n+AAAAGTAACCTTGGCT\n+AAAAGGTTGAGCCAAA\n+AAAAGGTGGGTGAATT\n+AAAAGGTCAAGGCCTT\n+AAAAGGGGACGATTGC\n+AAAAGGGATTACCCAA\n+AAAAGGCTAAAACTAC\n+AAAAGGCAGCAGCTAC\n+AAAAGGCAGAGCCCTG\n+AAAAGGCAAAGGCTAA\n+AAAAGGAGATCTTTAA\n+AAAAGGACACTTCTGA\n+AAAAGGAAGAAGAATA\n+AAAAGCTTTTGTTTTC\n+AAAAGCTGGGAACCTT\n+AAAAGCTGCTGCTCCT\n+AAAAGCTCCGCAACAA\n+AAAAGCGCTGCAGTAG\n+AAAAGCCTGTGGCTTC\n+AAAAGCCACTGGGGAC\n+AAAAGATTCTTTCCAA\n+AAAAGATCTGCTAGAA\n+AAAAGAGTGCTGAATT\n+AAAAGAGCTTAACAGG\n+AAAAGAGAAATATGAG\n+AAAAGACTATTGTGCC\n+AAAAGAATGTCTGTTT\n+AAAAGAAGCCATTGCT\n+AAAAGAAGAAAACGAA\n+AAAACTTTTTGGTGCT\n+AAAACTTTCAAGTGAA\n+AAAACTTGGTGTGGGG\n+AAAACTTAAGAATCCC\n+AAAACTGTCGTCAATA\n+AAAACTGCGAGCCAGC\n+AAAACTGAAACTGTGG\n+AAAACTATCCAGTGAT\n+AAAACTACTCCAGTGG\n+AAAACTACCAGTTCTT\n+AAAACTAATGTAAACT\n+AAAACTAATCGTCCCA\n+AAAACTAACAGATGAA\n+AAAACGTAATGAGGAT\n+AAAACCTTTTATGACA\n+AAAACCTTGCATCCTA\n+AAAACCTGCACTTGTT\n+AAAACCTAGACCTTGA\n+AAAACCATGGTCCCCC\n+AAAACCAGAGTCATCT\n+AAAACCAAGCGAGGCC\n+AAAACATTATTGAGGA\n+AAAACAGCACAAAAAA\n+AAAACACTTCCTTGGA\n+AAAACAAGGACTGCAG\n+AAAACAACAACATAAA\n+AAAACAACAACAAAGA\n+AAAACAAATTTGCCGT\n+AAAACAAAGTTGATTG\n+AAAACAAACAATCCAG\n+AAAACAAAACAAAACA\n+AAAAATTGTTCAACCT\n+AAAAATTGCACACACT\n+AAAAATTCAGTTGCTT\n+AAAAATTAGCCTTGCG\n+AAAAATGTTTTCCCCA\n+AAAAATGTTTAAAATG\n+AAAAATGAACCCAAAC\n+AAAAATAAGCAAAAGC\n+AAAAATAAGAGGCGAT\n+AAAAATAAGAACCTGG\n+AAAAAGTCCTAATAGT\n+AAAAAGTCCAGTAACC\n+AAAAAGGGTGCAGACG\n+AAAAAGGGGTTTCTTT\n+AAAAAGCTCCAGCCCA\n+AAAAAGCCGTACAAAA\n+AAAAAGATATTGTTGT\n+AAAAAGAAAGAAGCCA\n+AAAAAGAAAAAGAAGA\n+AAAAACGCGAAATTCT\n+AAAAACAATCTTATTC\n+AAAAACAACTTCTCAG\n+AAAAACAAAGCACATG\n+AAAAACAAAAAGAAAT\n+AAAAAATTTTGCATTA\n+AAAAAATTGTATTGAA\n+AAAAAATTCCCCCCAT\n+AAAAAATTCAAATGCA\n+AAAAAATGCAGGTTGT\n+AAAAAATCTCTTTTTT\n+AAAAAATCTATCATGT\n+AAAAAATAGTCAATAG\n+AAAAAAGGCAGCAGCT\n+AAAAAAGGAGAAAGCC\n+AAAAAAGAATTCCACT\n+AAAAAAGAAATGAAAA\n+AAAAAACTTCCTACCA\n+AAAAAACTCGAGGACT\n+AAAAAACGGATCACCG\n+AAAAAACCGTCGAGAT\n+AAAAAACCAAGTAGTG\n+AAAAAACACAAAAAAT\n+AAAAAACAAGACTAAA\n+AAAAAAAGTTGGTGAT\n+AAAAAAAGCCATGAAG\n+AAAAAAACAGAGATGG\n'

diff -r 17f7e1e51fad -r 60fa6080f86f foo.mtx/barcodes.tsv
--- /dev/null Thu Jan 01 00:00:00 1970 +0000
+++ b/foo.mtx/barcodes.tsv Fri Nov 22 11:11:16 2019 -0500

diff -r 17f7e1e51fad -r 60fa6080f86f foo.mtx/genes.tsv
--- /dev/null Thu Jan 01 00:00:00 1970 +0000
+++ b/foo.mtx/genes.tsv Fri Nov 22 11:11:16 2019 -0500

b'@@ -0,0 +1,32919 @@\n+ERCC-00002\tERCC-00002\n+ERCC-00003\tERCC-00003\n+ERCC-00004\tERCC-00004\n+ERCC-00009\tERCC-00009\n+ERCC-00012\tERCC-00012\n+ERCC-00013\tERCC-00013\n+ERCC-00014\tERCC-00014\n+ERCC-00016\tERCC-00016\n+ERCC-00017\tERCC-00017\n+ERCC-00019\tERCC-00019\n+ERCC-00022\tERCC-00022\n+ERCC-00024\tERCC-00024\n+ERCC-00025\tERCC-00025\n+ERCC-00028\tERCC-00028\n+ERCC-00031\tERCC-00031\n+ERCC-00033\tERCC-00033\n+ERCC-00034\tERCC-00034\n+ERCC-00035\tERCC-00035\n+ERCC-00039\tERCC-00039\n+ERCC-00040\tERCC-00040\n+ERCC-00041\tERCC-00041\n+ERCC-00042\tERCC-00042\n+ERCC-00043\tERCC-00043\n+ERCC-00044\tERCC-00044\n+ERCC-00046\tERCC-00046\n+ERCC-00048\tERCC-00048\n+ERCC-00051\tERCC-00051\n+ERCC-00053\tERCC-00053\n+ERCC-00054\tERCC-00054\n+ERCC-00057\tERCC-00057\n+ERCC-00058\tERCC-00058\n+ERCC-00059\tERCC-00059\n+ERCC-00060\tERCC-00060\n+ERCC-00061\tERCC-00061\n+ERCC-00062\tERCC-00062\n+ERCC-00067\tERCC-00067\n+ERCC-00069\tERCC-00069\n+ERCC-00071\tERCC-00071\n+ERCC-00073\tERCC-00073\n+ERCC-00074\tERCC-00074\n+ERCC-00075\tERCC-00075\n+ERCC-00076\tERCC-00076\n+ERCC-00077\tERCC-00077\n+ERCC-00078\tERCC-00078\n+ERCC-00079\tERCC-00079\n+ERCC-00081\tERCC-00081\n+ERCC-00083\tERCC-00083\n+ERCC-00084\tERCC-00084\n+ERCC-00085\tERCC-00085\n+ERCC-00086\tERCC-00086\n+ERCC-00092\tERCC-00092\n+ERCC-00095\tERCC-00095\n+ERCC-00096\tERCC-00096\n+ERCC-00097\tERCC-00097\n+ERCC-00098\tERCC-00098\n+ERCC-00099\tERCC-00099\n+ERCC-00104\tERCC-00104\n+ERCC-00108\tERCC-00108\n+ERCC-00109\tERCC-00109\n+ERCC-00111\tERCC-00111\n+ERCC-00112\tERCC-00112\n+ERCC-00113\tERCC-00113\n+ERCC-00116\tERCC-00116\n+ERCC-00117\tERCC-00117\n+ERCC-00120\tERCC-00120\n+ERCC-00123\tERCC-00123\n+ERCC-00126\tERCC-00126\n+ERCC-00130\tERCC-00130\n+ERCC-00131\tERCC-00131\n+ERCC-00134\tERCC-00134\n+ERCC-00136\tERCC-00136\n+ERCC-00137\tERCC-00137\n+ERCC-00138\tERCC-00138\n+ERCC-00142\tERCC-00142\n+ERCC-00143\tERCC-00143\n+ERCC-00144\tERCC-00144\n+ERCC-00145\tERCC-00145\n+ERCC-00147\tERCC-00147\n+ERCC-00148\tERCC-00148\n+ERCC-00150\tERCC-00150\n+ERCC-00154\tERCC-00154\n+ERCC-00156\tERCC-00156\n+ERCC-00157\tERCC-00157\n+ERCC-00158\tERCC-00158\n+ERCC-00160\tERCC-00160\n+ERCC-00162\tERCC-00162\n+ERCC-00163\tERCC-00163\n+ERCC-00164\tERCC-00164\n+ERCC-00165\tERCC-00165\n+ERCC-00168\tERCC-00168\n+ERCC-00170\tERCC-00170\n+ERCC-00171\tERCC-00171\n+ENSG00000223972\tENSG00000223972\n+ENSG00000227232\tENSG00000227232\n+ENSG00000268020\tENSG00000268020\n+ENSG00000240361\tENSG00000240361\n+ENSG00000186092\tENSG00000186092\n+ENSG00000233750\tENSG00000233750\n+ENSG00000268903\tENSG00000268903\n+ENSG00000269981\tENSG00000269981\n+ENSG00000279928\tENSG00000279928\n+ENSG00000279457\tENSG00000279457\n+ENSG00000228463\tENSG00000228463\n+ENSG00000236679\tENSG00000236679\n+ENSG00000237094\tENSG00000237094\n+ENSG00000269732\tENSG00000269732\n+ENSG00000233653\tENSG00000233653\n+ENSG00000250575\tENSG00000250575\n+ENSG00000230021\tENSG00000230021\n+ENSG00000225972\tENSG00000225972\n+ENSG00000225630\tENSG00000225630\n+ENSG00000237973\tENSG00000237973\n+ENSG00000229344\tENSG00000229344\n+ENSG00000240409\tENSG00000240409\n+ENSG00000248527\tENSG00000248527\n+ENSG00000198744\tENSG00000198744\n+ENSG00000268663\tENSG00000268663\n+ENSG00000229376\tENSG00000229376\n+ENSG00000228327\tENSG00000228327\n+ENSG00000285268\tENSG00000285268\n+ENSG00000230092\tENSG00000230092\n+ENSG00000234711\tENSG00000234711\n+ENSG00000283040\tENSG00000283040\n+ENSG00000187634\tENSG00000187634\n+ENSG00000188976\tENSG00000188976\n+ENSG00000187961\tENSG00000187961\n+ENSG00000187583\tENSG00000187583\n+ENSG00000187642\tENSG00000187642\n+ENSG00000188290\tENSG00000188290\n+ENSG00000187608\tENSG00000187608\n+ENSG00000231702\tENSG00000231702\n+ENSG00000188157\tENSG00000188157\n+ENSG00000217801\tENSG00000217801\n+ENSG00000237330\tENSG00000237330\n+ENSG00000131591\tENSG00000131591\n+ENSG00000162571\tENSG00000162571\n+ENSG00000186891\tENSG00000186891\n+ENSG00000186827\tENSG00000186827\n+ENSG00000078808\tENSG00000078808\n+ENSG00000176022\tENSG00000176022\n+ENSG00000184163\tENSG00000184163\n+ENSG00000160087\tENSG00000160087\n+ENSG00000162572\tENSG00000162572\n+ENSG00000131584\tENSG00000131584\n+ENSG00000169972\tENSG00000169972\n+ENSG00000127054\tENSG00000127054\n+ENSG00000224051\tENSG00000224051\n+ENSG00000169962\tENSG00000169962\n+ENSG0000010740'..b'32429\n+ENSG00000124302\tENSG00000124302\n+ENSG00000153885\tENSG00000153885\n+ENSG00000239253\tENSG00000239253\n+ENSG00000249987\tENSG00000249987\n+ENSG00000186008\tENSG00000186008\n+ENSG00000270849\tENSG00000270849\n+ENSG00000257103\tENSG00000257103\n+ENSG00000166398\tENSG00000166398\n+ENSG00000257074\tENSG00000257074\n+ENSG00000105220\tENSG00000105220\n+ENSG00000266953\tENSG00000266953\n+ENSG00000126249\tENSG00000126249\n+ENSG00000126261\tENSG00000126261\n+ENSG00000142279\tENSG00000142279\n+ENSG00000239210\tENSG00000239210\n+ENSG00000248830\tENSG00000248830\n+ENSG00000205209\tENSG00000205209\n+ENSG00000271049\tENSG00000271049\n+ENSG00000269811\tENSG00000269811\n+ENSG00000089335\tENSG00000089335\n+ENSG0000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diff -r 17f7e1e51fad -r 60fa6080f86f foo.mtx/matrix.mtx
--- /dev/null Thu Jan 01 00:00:00 1970 +0000
+++ b/foo.mtx/matrix.mtx Fri Nov 22 11:11:16 2019 -0500

b'@@ -0,0 +1,427534 @@\n+%%MatrixMarket matrix coordinate real general\n+%\n+35550 4409 427531\n+186 1 2.000000000000000e+00\n+216 1 1.000000000000000e+00\n+303 1 1.000000000000000e+00\n+309 1 1.000000000000000e+00\n+448 1 1.000000000000000e+00\n+457 1 1.000000000000000e+00\n+466 1 3.000000000000000e+00\n+533 1 4.000000000000000e+00\n+594 1 1.000000000000000e+00\n+641 1 1.000000000000000e+00\n+707 1 1.000000000000000e+00\n+712 1 1.000000000000000e+00\n+744 1 1.000000000000000e+00\n+768 1 1.000000000000000e+00\n+827 1 1.000000000000000e+00\n+902 1 2.000000000000000e+00\n+926 1 1.000000000000000e+00\n+939 1 2.000000000000000e+00\n+958 1 2.000000000000000e+00\n+981 1 5.000000000000000e-01\n+982 1 5.000000000000000e-01\n+1008 1 1.000000000000000e+00\n+1121 1 1.000000000000000e+00\n+1183 1 1.000000000000000e+00\n+1316 1 1.000000000000000e+00\n+1328 1 1.000000000000000e+00\n+1384 1 1.000000000000000e+00\n+1452 1 1.000000000000000e+00\n+1495 1 1.520000000000000e-04\n+1540 1 3.333330000000000e-01\n+1600 1 1.000000000000000e+00\n+1616 1 5.000000000000000e-01\n+1617 1 5.000000000000000e-01\n+1731 1 1.000000000000000e+00\n+1786 1 1.000000000000000e+00\n+1790 1 9.090900000000000e-02\n+1792 1 9.090900000000000e-02\n+1834 1 9.090900000000000e-02\n+1848 1 9.090900000000000e-02\n+1852 1 9.090900000000000e-02\n+1857 1 1.000000000000000e+00\n+1869 1 1.000000000000000e+00\n+1871 1 9.090900000000000e-02\n+1872 1 9.090900000000000e-02\n+1879 1 9.090900000000000e-02\n+1915 1 9.090900000000000e-02\n+1920 1 9.090900000000000e-02\n+1924 1 9.090900000000000e-02\n+1952 1 1.000000000000000e+00\n+2016 1 5.000000000000000e+00\n+2018 1 2.000000000000000e+00\n+2086 1 1.000000000000000e+00\n+2093 1 1.000000000000000e+00\n+2114 1 1.000000000000000e+00\n+2118 1 1.000000000000000e+00\n+2154 1 5.000000000000000e-01\n+2155 1 5.000000000000000e-01\n+2177 1 1.000000000000000e+00\n+2192 1 1.000000000000000e+00\n+2196 1 1.000000000000000e+00\n+2218 1 1.000000000000000e+00\n+2259 1 1.000000000000000e+00\n+2345 1 9.000000000000000e+00\n+2366 1 1.000000000000000e+00\n+2404 1 1.000000000000000e+00\n+2408 1 1.000000000000000e+00\n+2624 1 1.000000000000000e+00\n+2677 1 1.000000000000000e+00\n+2836 1 1.000000000000000e+00\n+2898 1 1.000000000000000e+00\n+2948 1 3.333330000000000e-01\n+2978 1 1.000000000000000e+00\n+3082 1 1.000000000000000e+00\n+3437 1 3.333330000000000e-01\n+3454 1 1.000000000000000e+00\n+3474 1 1.000000000000000e+00\n+3519 1 1.000000000000000e+00\n+3636 1 1.000000000000000e+00\n+3646 1 3.000000000000000e+00\n+3786 1 1.000000000000000e+00\n+3794 1 0.000000000000000e+00\n+3828 1 5.000000000000000e-01\n+3846 1 3.000000000000000e+00\n+3984 1 1.000000000000000e+00\n+4006 1 1.000000000000000e+00\n+4031 1 3.333330000000000e-01\n+4076 1 1.000000000000000e+00\n+4125 1 1.000000000000000e+00\n+4442 1 1.000000000000000e+00\n+4445 1 1.000000000000000e+00\n+4456 1 2.000000000000000e+00\n+4628 1 1.000000000000000e+00\n+4674 1 1.000000000000000e+00\n+4694 1 1.000000000000000e+00\n+4759 1 1.000000000000000e+00\n+4933 1 1.000000000000000e+00\n+4940 1 1.000000000000000e+00\n+5237 1 1.000000000000000e+00\n+5244 1 1.000000000000000e+00\n+5389 1 1.000000000000000e+00\n+5475 1 1.000000000000000e+00\n+5524 1 5.000000000000000e-01\n+5525 1 5.000000000000000e-01\n+5550 1 1.000000000000000e+00\n+5653 1 1.000000000000000e+00\n+5900 1 1.000000000000000e+00\n+5915 1 1.000000000000000e+00\n+5981 1 3.000000000000000e+00\n+6126 1 3.333330000000000e-01\n+6133 1 3.000000000000000e+00\n+6276 1 1.000000000000000e+00\n+6386 1 3.000000000000000e+00\n+6434 1 1.000000000000000e+00\n+6502 1 2.000000000000000e+00\n+6524 1 1.000000000000000e+00\n+6645 1 2.000000000000000e+00\n+6695 1 1.000000000000000e+00\n+6715 1 2.000000000000000e+00\n+6792 1 1.000000000000000e+00\n+6833 1 2.000000000000000e+00\n+6939 1 1.000000000000000e+00\n+7099 1 1.000000000000000e+00\n+7199 1 2.000000000000000e+00\n+7368 1 1.000000000000000e+00\n+7443 1 1.000000000000000e+00\n+7709 1 1.000000000000000e+00\n+7990 1 1.000000000000000e+00\n+8007 1 1.500000000000000e+00\n+8322 1 1.000000000000000e+00\n+8449 1 1.000000000000000e+00\n+8594 1 1.000000000000000e+00\n'..b'00000000e-01\n+6426 4407 1.000000000000000e+00\n+6744 4407 1.000000000000000e+00\n+8143 4407 9.090900000000000e-02\n+8601 4407 1.000000000000000e+00\n+9204 4407 1.000000000000000e+00\n+9407 4407 9.090900000000000e-02\n+10777 4407 1.000000000000000e+00\n+11338 4407 1.000000000000000e+00\n+11417 4407 1.000000000000000e+00\n+12331 4407 1.000000000000000e+00\n+12688 4407 9.090900000000000e-02\n+13983 4407 1.000000000000000e+00\n+14038 4407 1.000000000000000e+00\n+14240 4407 9.090900000000000e-02\n+14655 4407 2.000000000000000e+00\n+15333 4407 1.000000000000000e+00\n+17422 4407 1.000000000000000e+00\n+17594 4407 1.000000000000000e+00\n+19114 4407 1.000000000000000e+00\n+20125 4407 5.000000000000000e-01\n+20126 4407 5.000000000000000e-01\n+20993 4407 1.000000000000000e+00\n+23211 4407 9.090900000000000e-02\n+23422 4407 1.000000000000000e+00\n+23642 4407 9.090900000000000e-02\n+24217 4407 1.000000000000000e+00\n+25052 4407 1.000000000000000e+00\n+25393 4407 1.000000000000000e+00\n+26717 4407 1.000000000000000e+00\n+26999 4407 2.000000000000000e+00\n+27282 4407 1.000000000000000e+00\n+28272 4407 5.000000000000000e-01\n+28274 4407 5.000000000000000e-01\n+28449 4407 1.000000000000000e+00\n+28759 4407 1.000000000000000e+00\n+30503 4407 9.090900000000000e-02\n+31305 4407 1.000000000000000e+00\n+31957 4407 1.000000000000000e+00\n+32255 4407 1.000000000000000e+00\n+32738 4407 3.333330000000000e-01\n+34980 4407 9.090900000000000e-02\n+35511 4407 1.000000000000000e+00\n+793 4408 1.000000000000000e+00\n+1805 4408 1.000000000000000e+00\n+3437 4408 2.500000000000000e-01\n+3846 4408 1.000000000000000e+00\n+3863 4408 5.000000000000000e-01\n+4164 4408 1.000000000000000e+00\n+8415 4408 1.000000000000000e+00\n+9868 4408 1.000000000000000e+00\n+10452 4408 1.000000000000000e+00\n+14655 4408 2.000000000000000e+00\n+14756 4408 1.000000000000000e+00\n+19114 4408 2.000000000000000e+00\n+19388 4408 5.000000000000000e-01\n+19395 4408 1.000000000000000e+00\n+20287 4408 1.000000000000000e+00\n+20821 4408 1.000000000000000e+00\n+21317 4408 1.000000000000000e+00\n+22161 4408 5.000000000000000e-01\n+23189 4408 1.000000000000000e+00\n+24312 4408 2.500000000000000e-01\n+24556 4408 1.000000000000000e+00\n+25813 4408 1.000000000000000e+00\n+26717 4408 1.000000000000000e+00\n+28436 4408 1.000000000000000e+00\n+29393 4408 2.500000000000000e-01\n+29619 4408 1.000000000000000e+00\n+29816 4408 1.000000000000000e+00\n+29913 4408 2.500000000000000e-01\n+30849 4408 5.000000000000000e-01\n+30850 4408 5.000000000000000e-01\n+32549 4408 1.000000000000000e+00\n+33389 4408 5.000000000000000e-01\n+33485 4408 1.000000000000000e+00\n+33691 4408 1.000000000000000e+00\n+35507 4408 1.000000000000000e+00\n+35508 4408 1.000000000000000e+00\n+169 4409 1.000000000000000e+00\n+373 4409 1.000000000000000e+00\n+2863 4409 1.000000000000000e+00\n+2875 4409 1.000000000000000e+00\n+3846 4409 1.000000000000000e+00\n+5900 4409 1.000000000000000e+00\n+6177 4409 1.000000000000000e+00\n+7356 4409 1.000000000000000e+00\n+9564 4409 3.333330000000000e-01\n+10033 4409 1.000000000000000e+00\n+10131 4409 1.000000000000000e+00\n+11313 4409 1.000000000000000e+00\n+14655 4409 1.000000000000000e+00\n+16220 4409 3.000000000000000e+00\n+17749 4409 1.000000000000000e+00\n+18791 4409 1.000000000000000e+00\n+18817 4409 1.000000000000000e+00\n+20125 4409 5.000000000000000e-01\n+20126 4409 5.000000000000000e-01\n+20504 4409 5.000000000000000e-01\n+21176 4409 1.000000000000000e+00\n+21943 4409 1.000000000000000e+00\n+22603 4409 5.000000000000000e-01\n+23407 4409 1.000000000000000e+00\n+24136 4409 1.000000000000000e+00\n+24298 4409 1.000000000000000e+00\n+25426 4409 1.000000000000000e+00\n+26069 4409 1.000000000000000e+00\n+26099 4409 1.000000000000000e+00\n+29048 4409 3.333330000000000e-01\n+29049 4409 3.333330000000000e-01\n+29790 4409 1.000000000000000e+00\n+30023 4409 5.000000000000000e-01\n+30024 4409 5.000000000000000e-01\n+32151 4409 1.000000000000000e+00\n+32878 4409 1.000000000000000e+00\n+33279 4409 1.000000000000000e+00\n+33348 4409 2.000000000000000e+00\n+33691 4409 1.000000000000000e+00\n+35516 4409 1.000000000000000e+00\n'

diff -r 17f7e1e51fad -r 60fa6080f86f genes.tsv
--- /dev/null Thu Jan 01 00:00:00 1970 +0000
+++ b/genes.tsv Fri Nov 22 11:11:16 2019 -0500

b'@@ -0,0 +1,32919 @@\n+ERCC-00002\n+ERCC-00003\n+ERCC-00004\n+ERCC-00009\n+ERCC-00012\n+ERCC-00013\n+ERCC-00014\n+ERCC-00016\n+ERCC-00017\n+ERCC-00019\n+ERCC-00022\n+ERCC-00024\n+ERCC-00025\n+ERCC-00028\n+ERCC-00031\n+ERCC-00033\n+ERCC-00034\n+ERCC-00035\n+ERCC-00039\n+ERCC-00040\n+ERCC-00041\n+ERCC-00042\n+ERCC-00043\n+ERCC-00044\n+ERCC-00046\n+ERCC-00048\n+ERCC-00051\n+ERCC-00053\n+ERCC-00054\n+ERCC-00057\n+ERCC-00058\n+ERCC-00059\n+ERCC-00060\n+ERCC-00061\n+ERCC-00062\n+ERCC-00067\n+ERCC-00069\n+ERCC-00071\n+ERCC-00073\n+ERCC-00074\n+ERCC-00075\n+ERCC-00076\n+ERCC-00077\n+ERCC-00078\n+ERCC-00079\n+ERCC-00081\n+ERCC-00083\n+ERCC-00084\n+ERCC-00085\n+ERCC-00086\n+ERCC-00092\n+ERCC-00095\n+ERCC-00096\n+ERCC-00097\n+ERCC-00098\n+ERCC-00099\n+ERCC-00104\n+ERCC-00108\n+ERCC-00109\n+ERCC-00111\n+ERCC-00112\n+ERCC-00113\n+ERCC-00116\n+ERCC-00117\n+ERCC-00120\n+ERCC-00123\n+ERCC-00126\n+ERCC-00130\n+ERCC-00131\n+ERCC-00134\n+ERCC-00136\n+ERCC-00137\n+ERCC-00138\n+ERCC-00142\n+ERCC-00143\n+ERCC-00144\n+ERCC-00145\n+ERCC-00147\n+ERCC-00148\n+ERCC-00150\n+ERCC-00154\n+ERCC-00156\n+ERCC-00157\n+ERCC-00158\n+ERCC-00160\n+ERCC-00162\n+ERCC-00163\n+ERCC-00164\n+ERCC-00165\n+ERCC-00168\n+ERCC-00170\n+ERCC-00171\n+ENSG00000223972\n+ENSG00000227232\n+ENSG00000268020\n+ENSG00000240361\n+ENSG00000186092\n+ENSG00000233750\n+ENSG00000268903\n+ENSG00000269981\n+ENSG00000279928\n+ENSG00000279457\n+ENSG00000228463\n+ENSG00000236679\n+ENSG00000237094\n+ENSG00000269732\n+ENSG00000233653\n+ENSG00000250575\n+ENSG00000230021\n+ENSG00000225972\n+ENSG00000225630\n+ENSG00000237973\n+ENSG00000229344\n+ENSG00000240409\n+ENSG00000248527\n+ENSG00000198744\n+ENSG00000268663\n+ENSG00000229376\n+ENSG00000228327\n+ENSG00000285268\n+ENSG00000230092\n+ENSG00000234711\n+ENSG00000283040\n+ENSG00000187634\n+ENSG00000188976\n+ENSG00000187961\n+ENSG00000187583\n+ENSG00000187642\n+ENSG00000188290\n+ENSG00000187608\n+ENSG00000231702\n+ENSG00000188157\n+ENSG00000217801\n+ENSG00000237330\n+ENSG00000131591\n+ENSG00000162571\n+ENSG00000186891\n+ENSG00000186827\n+ENSG00000078808\n+ENSG00000176022\n+ENSG00000184163\n+ENSG00000160087\n+ENSG00000162572\n+ENSG00000131584\n+ENSG00000169972\n+ENSG00000127054\n+ENSG00000224051\n+ENSG00000169962\n+ENSG00000107404\n+ENSG00000162576\n+ENSG00000175756\n+ENSG00000223663\n+ENSG00000221978\n+ENSG00000242485\n+ENSG00000235098\n+ENSG00000205116\n+ENSG00000179403\n+ENSG00000215915\n+ENSG00000160072\n+ENSG00000284740\n+ENSG00000197785\n+ENSG00000205090\n+ENSG00000160075\n+ENSG00000274481\n+ENSG00000228594\n+ENSG00000197530\n+ENSG00000189409\n+ENSG00000248333\n+ENSG00000189339\n+ENSG00000269737\n+ENSG00000215914\n+ENSG00000008128\n+ENSG00000227775\n+ENSG00000215790\n+ENSG00000008130\n+ENSG00000078369\n+ENSG00000169885\n+ENSG00000178821\n+ENSG00000142609\n+ENSG00000187730\n+ENSG00000067606\n+ENSG00000162585\n+ENSG00000157933\n+ENSG00000116151\n+ENSG00000269896\n+ENSG00000157916\n+ENSG00000157911\n+ENSG00000149527\n+ENSG00000157881\n+ENSG00000197921\n+ENSG00000157873\n+ENSG00000157870\n+ENSG00000142606\n+ENSG00000215912\n+ENSG00000169717\n+ENSG00000142611\n+ENSG00000130762\n+ENSG00000162591\n+ENSG00000158109\n+ENSG00000116213\n+ENSG00000078900\n+ENSG00000227372\n+ENSG00000162592\n+ENSG00000235169\n+ENSG00000130764\n+ENSG00000116198\n+ENSG00000169598\n+ENSG00000198912\n+ENSG00000229280\n+ENSG00000196581\n+ENSG00000283356\n+ENSG00000131697\n+ENSG00000069424\n+ENSG00000116254\n+ENSG00000285629\n+ENSG00000116251\n+ENSG00000158286\n+ENSG00000116237\n+ENSG00000173673\n+ENSG00000158292\n+ENSG00000097021\n+ENSG00000069812\n+ENSG00000187017\n+ENSG00000215788\n+ENSG00000171680\n+ENSG00000162408\n+ENSG00000229519\n+ENSG00000173662\n+ENSG00000204859\n+ENSG00000162413\n+ENSG00000116273\n+ENSG00000041988\n+ENSG00000007923\n+ENSG00000171735\n+ENSG00000227950\n+ENSG00000049245\n+ENSG00000049246\n+ENSG00000049247\n+ENSG00000049249\n+ENSG00000270330\n+ENSG00000116288\n+ENSG00000116285\n+ENSG00000232848\n+ENSG00000229305\n+ENSG00000162426\n+ENSG00000142599\n+ENSG00000270282\n+ENSG00000234619\n+ENSG00000224315\n+ENSG00000226545\n+ENSG00000229716\n+ENSG00000074800\n+ENSG00000238249\n+ENSG00000232208\n+ENSG00000232663\n+ENSG00000131686\n+ENSG00000197241\n+ENSG00000142583\n+ENSG00000180758\n+ENSG00000049239\n+ENSG00000171621\n+E'..b'079\n+ENSG00000282732\n+ENSG00000196350\n+ENSG00000270191\n+ENSG00000268685\n+ENSG00000236312\n+ENSG00000197360\n+ENSG00000268830\n+ENSG00000268717\n+ENSG00000269138\n+ENSG00000270317\n+ENSG00000271149\n+ENSG00000269332\n+ENSG00000269025\n+ENSG00000269316\n+ENSG00000268589\n+ENSG00000229676\n+ENSG00000198153\n+ENSG00000241282\n+ENSG00000270475\n+ENSG00000268789\n+ENSG00000213973\n+ENSG00000279966\n+ENSG00000270518\n+ENSG00000269509\n+ENSG00000268696\n+ENSG00000271655\n+ENSG00000268541\n+ENSG00000269458\n+ENSG00000269067\n+ENSG00000271661\n+ENSG00000183850\n+ENSG00000270479\n+ENSG00000268105\n+ENSG00000267920\n+ENSG00000269471\n+ENSG00000196081\n+ENSG00000283201\n+ENSG00000268469\n+ENSG00000269837\n+ENSG00000268794\n+ENSG00000268148\n+ENSG000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diff -r 17f7e1e51fad -r 60fa6080f86f matrix.mtx.gz

Binary file matrix.mtx.gz has changed

diff -r 17f7e1e51fad -r 60fa6080f86f salmonKallistoMtxTo10x.py
--- a/salmonKallistoMtxTo10x.py Thu Nov 21 09:38:48 2019 -0500
+++ b/salmonKallistoMtxTo10x.py Fri Nov 22 11:11:16 2019 -0500

[

@@ -49,7 +49,20 @@
cb_names = [cell_prefix + s for s in pd.read_csv(cb_file, header=None)[0].values]
gene_names = pd.read_csv(gene_file, header=None)[0].values
umi_counts = mmread( quant_file )
-
+
+nrows = umi_counts.shape[0]
+ncols = umi_counts.shape[1]
+
+# Add a dimension check
+
+if len(cb_names) != nrows:
+    print('The number of matrix rows (%d) does not match the number of supplied barcodes (%d)' % (nrows, len(cb_names)))
+    sys.exit(1)
+
+if len(gene_names) != ncols:
+    print('The number of matrix columns (%d) does not match the number of supplied genes (%d)' % (ncols, len(gene_names)))
+    sys.exit(1)
+
# Write outputs to a .mtx file readable by tools expecting 10X outputs.
# Barcodes file works as-is, genes need to be two-column, duplicating the
# identifiers. Matrix itself needs to have genes by row, so we transpose.

diff -r 17f7e1e51fad -r 60fa6080f86f salmonKallistoMtxTo10x.xml
--- a/salmonKallistoMtxTo10x.xml Thu Nov 21 09:38:48 2019 -0500
+++ b/salmonKallistoMtxTo10x.xml Fri Nov 22 11:11:16 2019 -0500

@@ -1,4 +1,4 @@
-<tool id="_salmon_kallisto_mtx_to_10x" name="salmonKallistoMtxTo10x" version="0.0.1+galaxy2">
+<tool id="_salmon_kallisto_mtx_to_10x" name="salmonKallistoMtxTo10x" version="0.0.1+galaxy3">
     <description>Transforms .mtx matrix and associated labels into a format compatible with tools expecting old-style 10X data</description>
     <requirements>
       <requirement type="package">scipy</requirement>