Previous changeset 0:2126e1b833a2 (2014-05-19) Next changeset 2:16df616b39e5 (2020-03-01) |
Commit message:
Add bx-python dependency. |
modified:
fasta_concatenate_by_species.xml utils/maf_utilities.py |
added:
tool_dependencies.xml |
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diff -r 2126e1b833a2 -r 717aee069681 fasta_concatenate_by_species.xml --- a/fasta_concatenate_by_species.xml Mon May 19 12:33:30 2014 -0400 +++ b/fasta_concatenate_by_species.xml Mon Nov 17 10:15:05 2014 -0500 |
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@@ -1,5 +1,8 @@ <tool id="fasta_concatenate0" name="Concatenate" version="0.0.0"> <description>FASTA alignment by species</description> + <requirements> + <requirement type="package" version="0.7.1">bx-python</requirement> + </requirements> <command interpreter="python">fasta_concatenate_by_species.py $input1 $out_file1</command> <inputs> <param name="input1" type="data" format="fasta" label="FASTA alignment"/> @@ -69,4 +72,4 @@ This tool will only work properly on files with Galaxy style FASTA headers. </help> -</tool> \ No newline at end of file +</tool> |
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diff -r 2126e1b833a2 -r 717aee069681 tool_dependencies.xml --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/tool_dependencies.xml Mon Nov 17 10:15:05 2014 -0500 |
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@@ -0,0 +1,6 @@ +<?xml version="1.0"?> +<tool_dependency> + <package name="bx-python" version="0.7.1"> + <repository changeset_revision="2d0c08728bca" name="package_bx_python_0_7" owner="devteam" prior_installation_required="False" toolshed="http://toolshed.g2.bx.psu.edu" /> + </package> +</tool_dependency> |
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diff -r 2126e1b833a2 -r 717aee069681 utils/maf_utilities.py --- a/utils/maf_utilities.py Mon May 19 12:33:30 2014 -0400 +++ b/utils/maf_utilities.py Mon Nov 17 10:15:05 2014 -0500 |
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@@ -3,7 +3,6 @@ Provides wrappers and utilities for working with MAF files and alignments. """ #Dan Blankenberg -import pkg_resources; pkg_resources.require( "bx-python" ) import bx.align.maf import bx.intervals import bx.interval_index_file |