| Previous changeset 15:dc492eb6a4fc (2019-01-28) Next changeset 17:ce385837c160 (2020-11-20) |
|
Commit message:
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/emboss_5 commit d5dfff2cd58b094e0e4a6f8dc475de5facd9700b" |
|
modified:
emboss_cpgplot_wrapper.pl emboss_single_outputfile_wrapper.pl macros.xml |
|
removed:
emboss_infoseq_wrapper.pl emboss_multiple_outputfile_wrapper.pl |
| b |
| diff -r dc492eb6a4fc -r dba489bfcd62 emboss_cpgplot_wrapper.pl --- a/emboss_cpgplot_wrapper.pl Mon Jan 28 14:50:36 2019 -0500 +++ b/emboss_cpgplot_wrapper.pl Mon Dec 02 21:13:50 2019 -0500 |
| b |
| @@ -1,5 +1,5 @@ -#! /usr/bin/perl -w use strict; +use warnings; use File::Copy; my $cmd_string = join (" ",@ARGV); |
| b |
| diff -r dc492eb6a4fc -r dba489bfcd62 emboss_infoseq_wrapper.pl --- a/emboss_infoseq_wrapper.pl Mon Jan 28 14:50:36 2019 -0500 +++ /dev/null Thu Jan 01 00:00:00 1970 +0000 |
| [ |
| @@ -1,9 +0,0 @@ -#! /usr/bin/perl -w -use strict; - -my $cmd_string = join (" ",@ARGV); -my $results = `$cmd_string`; -if ($ARGV[6]=~/yes/) -{ - print "Extension: html\n"; -} |
| b |
| diff -r dc492eb6a4fc -r dba489bfcd62 emboss_multiple_outputfile_wrapper.pl --- a/emboss_multiple_outputfile_wrapper.pl Mon Jan 28 14:50:36 2019 -0500 +++ /dev/null Thu Jan 01 00:00:00 1970 +0000 |
| [ |
| @@ -1,19 +0,0 @@ -#! /usr/bin/perl -w -use strict; - -my $cmd_string = join (" ",@ARGV); -my $results = `$cmd_string`; -my @files = split("\n",$results); -foreach my $thisLine (@files) -{ - if ($thisLine =~ /Created /) - { - $thisLine =~ /[\w|\.]+$/; - $thisLine =$&; - print "outfile: $thisLine\n"; - } - else - { - print $thisLine,"\n"; - } -} |
| b |
| diff -r dc492eb6a4fc -r dba489bfcd62 emboss_single_outputfile_wrapper.pl --- a/emboss_single_outputfile_wrapper.pl Mon Jan 28 14:50:36 2019 -0500 +++ b/emboss_single_outputfile_wrapper.pl Mon Dec 02 21:13:50 2019 -0500 |
| b |
| @@ -1,5 +1,5 @@ -#! /usr/bin/perl -w use strict; +use warnings; use File::Copy; my $cmd_string = join (" ",@ARGV); |
| b |
| diff -r dc492eb6a4fc -r dba489bfcd62 macros.xml --- a/macros.xml Mon Jan 28 14:50:36 2019 -0500 +++ b/macros.xml Mon Dec 02 21:13:50 2019 -0500 |
| b |
| @@ -3,6 +3,7 @@ <xml name="requirements"> <requirements> <requirement type="package" version="@VERSION@">emboss</requirement> + <requirement type="package" version="5.26">perl</requirement> </requirements> </xml> <xml name="stdio"> |