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Changeset 2:b3b40009d056 (2014-12-11)

Previous changeset 1:d734400388b1 (2014-12-11) Next changeset 3:2b1093ae4d0c (2014-12-11)

Commit message:
Uploaded

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TRTR.git

diff -r d734400388b1 -r b3b40009d056 TRTR.git
--- /dev/null Thu Jan 01 00:00:00 1970 +0000
+++ b/TRTR.git Thu Dec 11 15:16:18 2014 -0500

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This prevents reads that don\'t span the repeated region from overlapping and leading to innaccurate SNPs calls.</p>\n+\n+<p>The maximimum repeat length is adjustable (use 1 to trim only homopolymers).</p>\n+\n+<p>The "aggressive" option should not be touched in general. Setting to 0 will prevent the program from trimming to exactly 1 copy of the repeat, instead leaving between 1 and 2 copies.</p>\n+\n+<p>This could also be a useful first step before assembly. More testing needs to be done.</p>\n+</article>\n+ </div>\n+\n+\n+ </div>\n+\n+ </div>\n+ <div class="modal-backdrop"></div>\n+ </div>\n+ </div>\n+\n+\n+ </div>\n+\n+ <div class="container">\n+ <div class="site-footer" role="contentinfo">\n+ <ul class="site-footer-links right">\n+ <li><a href="https://status.github.com/">Status</a></li>\n+ <li><a href="https://developer.github.com">API</a></li>\n+ <li><a href="http://training.github.com">Training</a></li>\n+ <li><a href="http://shop.github.com">Shop</a></li>\n+ <li><a href="/blog">Blog</a></li>\n+ <li><a href="/about">About</a></li>\n+\n+ </ul>\n+\n+ <a href="/" aria-label="Homepage">\n+ <span class="mega-octicon octicon-mark-github" title="GitHub"></span>\n+ </a>\n+\n+ <ul class="site-footer-links">\n+ <li>© 2014 <span title="0.03013s from github-fe124-cp1-prd.iad.github.net">GitHub</span>, Inc.</li>\n+ <li><a href="/site/terms">Terms</a></li>\n+ <li><a href="/site/privacy">Privacy</a></li>\n+ <li><a href="/security">Security</a></li>\n+ <li><a href="/contact">Contact</a></li>\n+ </ul>\n+ </div>\n+</div>\n+\n+\n+ <div class="fullscreen-overlay js-fullscreen-overlay" id="fullscreen_overlay">\n+ <div class="fullscreen-container js-suggester-container">\n+ <div class="textarea-wrap">\n+ <textarea name="fullscreen-contents" id="fullscreen-contents" class="fullscreen-contents js-fullscreen-contents" placeholder=""></textarea>\n+ <div class="suggester-container">\n+ <div class="suggester fullscreen-suggester js-suggester js-navigation-container"></div>\n+ </div>\n+ </div>\n+ </div>\n+ <div class="fullscreen-sidebar">\n+ <a href="#" class="exit-fullscreen js-exit-fullscreen tooltipped tooltipped-w" aria-label="Exit Zen Mode">\n+ <span class="mega-octicon octicon-screen-normal"></span>\n+ </a>\n+ <a href="#" class="theme-switcher js-theme-switcher tooltipped tooltipped-w"\n+ aria-label="Switch themes">\n+ <span class="octicon octicon-color-mode"></span>\n+ </a>\n+ </div>\n+</div>\n+\n+\n+\n+ <div id="ajax-error-message" class="flash flash-error">\n+ <span class="octicon octicon-alert"></span>\n+ <a href="#" class="octicon octicon-x flash-close js-ajax-error-dismiss" aria-label="Dismiss error"></a>\n+ Something went wrong with that request. 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