| Previous changeset 4:095c349b4343 (2018-04-16) Next changeset 6:a2d8855917a6 (2018-06-21) |
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Commit message:
planemo upload commit 57e3e460a740aa7aad217c8365527c49e88c9a30 |
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added:
test-data/scrb_extract.fastq.gz test-data/scrb_seq_barcodes test-data/scrb_seq_fastq.1.gz test-data/scrb_seq_fastq.2.gz test-data/t_R2.fastq |
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| diff -r 095c349b4343 -r a211847807c4 test-data/scrb_extract.fastq.gz |
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| Binary file test-data/scrb_extract.fastq.gz has changed |
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| diff -r 095c349b4343 -r a211847807c4 test-data/scrb_seq_barcodes --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/scrb_seq_barcodes Tue Jun 05 19:44:27 2018 -0400 |
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| @@ -0,0 +1,384 @@ +AAAACT +GCTAGA +AAAATC +GCTTAC +AAACAT +GGACAT +AAACTA +GGCAAT +AAAGTT +GGGATT +AAATAC +GTACAC +AAATCA +GTCAAG +AAATGT +GTGACT +AAATTG +GTTCGA +AACAAT +TAGTGG +AACATA +TCCAAC +AACTAA +TCGAAG +AAGATT +TCTGCA +AAGTAT +TTCCTC +AAGTTA +TTGTCC +AATAAC +TTTGGC +AATACA +CCAACC +AATAGT +CCTTCC +AATATG +CTCTCC +AATCAA +GGACCA +AATCTT +GTACCG +AATGAT +ACCCCC +AATGTA +ACCCGG +AATTAG +ACCGCG +AATTCT +ACCGGC +AATTGA +ACGCCG +AATTTC +ACGCGC +ACAAAT +ACGGCC +ACAATA +ACGGGG +ACATAA +AGCCCG +ACTAAA +AGCCGC +ACTATT +AGCGCC +ACTTAT +AGCGGG +ACTTTA +AGGCCC +AGAATT +AGGCGG +AGATAT +AGGGCG +AGATTA +AGGGGC +AGTAAT +CACCCC +AGTATA +CACCGG +AGTTAA +CACGCG +ATAAAC +CACGGC +ATAACA +CAGCCG +ATAAGT +CAGCGC +ATAATG +CAGGCC +ATACAA +CAGGGG +ATACTT +CCACCG +ATAGAT +CCACGC +ATAGTA +CCAGGG +ATATAG +CCCACG +ATATCT +CCCAGC +ATATGA +CCCCAC +ATATTC +CCCCCA +ATCAAA +CCCCGT +ATCATT +CCCCTG +ATCTAT +CCCGAG +ATCTTA +CCCGGA +ATGAAT +CCCTGG +ATGATA +CCGAGG +ATGTAA +CCGCAG +ATTAAG +CCGCGA +ATTACT +CCGGAC +ATTAGA +CCGGCA +ATTATC +CCGGGT +ATTCAT +CCGGTG +ATTCTA +CCGTCG +ATTGAA +CCGTGC +ATTGTT +CCTCGG +ATTTAC +CCTGCG +ATTTCA +CCTGGC +ATTTGT +CGACCC +ATTTTG +CGACGG +CAAAAT +CGAGCG +CAAATA +CGAGGC +CAATAA +CGCACC +CATAAA +CGCAGG +CATATT +CGCCAG +CATTAT +CGCCCT +CATTTA +CGCCGA +CTAAAA +CGCCTC +CTAATT +CGCGAC +CTATAT +CGCGCA +CTATTA +CGCGGT +CTTAAT +CGCGTG +CTTATA +CGCTCG +CTTTAA +CGCTGC +GAAATT +CGGACG +GAATAT +CGGAGC +GAATTA +CGGCAC +GATAAT +CGGCCA +GATATA +CGGCGT +GATTAA +CGGCTG +GTAAAT +CGGGAG +GTAATA +CGGGCT +GTATAA +CGGGGA +GTTAAA +CGGGTC +GTTATT +CGGTCC +GTTTAT +CGGTGG +GTTTTA +CGTCCG +TAAAAC +CGTCGC +TAAACA +CGTGCC +TAAAGT +CGTGGG +TAAATG +CTCCCG +TAACAA +CTCCGC +TAACTT +CTCGGG +TAAGAT +CTGCGG +TAAGTA +CTGGCG +TAATAG +CTGGGC +TAATCT +GACCCG +TAATGA +GACCGC +TAATTC +GACGCC +TACAAA +GACGGG +TACATT +GAGCCC +TACTAT +GAGCGG +TACTTA +GAGGCG +TAGAAT +GAGGGC +TAGATA +GCACCC +TAGTAA +GCACGG +TAGTTT +GCAGCG +TATAAG +GCAGGC +TATACT +GCCACC +TATAGA +GCCAGG +TATATC +GCCCAG +TATCAT +GCCCCT +TATCTA +GCCCGA +TATGAA +GCCCTC +TATGTT +GCCGAC +TATTAC +GCCGCA +TATTCA +GCCGGT +TATTGT +GCCGTG +TATTTG +GCCTCG +TCAAAA +GCCTGC +TCAATT +GCGACG +TCATAT +GCGAGC +TCATTA +GCGCAC +TCTAAT +GCGCCA +TCTATA +GCGCGT +TCTTAA +GCGCTG +TGAAAT +GCGGAG +TGAATA +GCGGCT +TGATAA +GCGGGA +TGATTT +GCGGTC +TGTAAA +GCGTCC +TGTATT +GCGTGG +TGTTAT +GCTCCG +TGTTTA +GCTCGC +TTAAAG +GCTGCC +TTAACT +GCTGGG +TTAAGA +GGACGC +TTAATC +GGAGCC +TTACAT +GGAGGG +TTACTA +GGCACG +TTAGAA +GGCAGC +TTAGTT +GGCCAC +TTATAC +GGCGAG +TTATCA +GGCGCT +TTATGT +GGCGGA +TTATTG +GGCGTC +TTCAAT +GGCTCC +TTCATA +GGGACC +TTCTAA +GGGAGG +TTGAAA +GGGCAG +TTGATT +GGGCCT +TTGTTA +GGGCGA +TTTAAC +GGGCTC +TTTACA +GGGGAC +TTTAGT +GGGGCA +TTTATG +GGGGGT +TTTCAA +GGGGTG +TTTCTT +GGGTCG +TTTGTA +GGGTGC +TTTTAG +GGTCCC +TTTTCT +GGTGCG +TTTTGA +GGTGGC +TCTTTC +GTCCCC +TTGGAT +GTCGCG +ACCGTA +GTCGGC +AGACCT +GTGCGC +AGGGAT +GTGGCC +ATCGAG +GTGGGG +CAAGCT +TCCCCG +CACCAA +TCCCGC +CAGTCA +TCCGGG +CATCAG +TCGCGG +CATGGT +TCGGCG +CCACAT +TCGGGC +CCGATT +TGCCCC +CGACTT +TGCGCG +CGATTG +TGCGGC +CTAGTG +TGGCCG +CTTCTG +TGGCGC +GAAGAC +TGGGCC +GATCGT +TGGGGG |
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| diff -r 095c349b4343 -r a211847807c4 test-data/scrb_seq_fastq.1.gz |
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| Binary file test-data/scrb_seq_fastq.1.gz has changed |
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| diff -r 095c349b4343 -r a211847807c4 test-data/scrb_seq_fastq.2.gz |
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| Binary file test-data/scrb_seq_fastq.2.gz has changed |
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| diff -r 095c349b4343 -r a211847807c4 test-data/t_R2.fastq --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/t_R2.fastq Tue Jun 05 19:44:27 2018 -0400 |
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| b"@@ -0,0 +1,400 @@\n+@HISEQ:105:C2UE1ACXX:3:1101:11160:2245 2:N:0:CAGATC\n+CATAAAAACCAAAACTAACTAAACCCCAAATAAAAAACAACCTAACCTCTAACAAAAACAACAACAACTAACACCTCAAAATCAACTCTAAATAAAAACTA\n++\n+BBBFFFFFFFFFFIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIFIIIIIIFFFFFFFFFFFFBFFFFFFFFFFFFFFFFFFFFFFFFFFFFFF\n+@HISEQ:105:C2UE1ACXX:3:1101:19338:2197 2:N:0:CAGATC\n+CTAATTTCTATTACCTACCTAACAACTATAACTATAATACTAACAAAAAACAAACAACATAGACCTAAATCCTACTTATACCCAACATTCTAAAAACAATT\n++\n+BBBFFFFFFFFFFIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII0<BFFIIIFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFB\n+@HISEQ:105:C2UE1ACXX:3:1101:19467:2281 2:N:0:CATATC\n+ACACAACAAAATCCCTACTCCTATAACCTCTCACTACACCCAAAACTCCATTCTTTTCCCCCTTTACAAAAATCACTAAAATCCAAACTATACATCTCACC\n++\n+BBBFFFFFFFFFFIIIIIIIIIIIIFIIIIIIIIIIIIIIIIIIIIIIIIIFIIIIIIIIIIFFIIIIFFFFBBFFFFFFFBBFFFFFBBBFFFBFFFFBF\n+@HISEQ:105:C2UE1ACXX:3:1101:7009:2740 2:N:0:CAGATC\n+TAAATAAAACCCAAACCCACACTATCTATCCCTTATTAACATTACAATCACAATTATCAAATAAATAACAAAACCCAAAAAAACCTTACTTAACATTCCAT\n++\n+BBBFFFFFFFFFFIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIFIIIFIIIIIIFFFFFFFFFFFFFFFFFFFFFFFFFFFFB\n+@HISEQ:105:C2UE1ACXX:3:1101:13708:2613 2:N:0:CAGATC\n+TTCAAAAACTCCATAACAAACACAAATAAAAAATAAAAAACTCCTAAATCTCACCTTAAAAACTTATCTAACTGCAACTATTATCTTACTTAAAAAAAAAC\n++\n+BBBFFFFFFFFFFIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIFFFFFFFFFFFBFFFFFFFFFFFFFFFFFFFFFFFFFFF\n+@HISEQ:105:C2UE1ACXX:3:1101:19067:2707 2:N:0:CAGATC\n+ATCACTCTTCCAAAAATCACTCGAATCCACAAATACAAAAACTTTCTAACCACACACCTAAAAAAAAAAAAAAAAAAAAAAAAACCCCCCCTTTAAAACCT\n++\n+BBBFFFFFFFFFFIIIIIIIIIIFFIIIIIIIIIIIIIIIFIIIIIIIIIFIIIIIIIFIIIIIFFFFFFFFFFFFFFFBB####################\n+@HISEQ:105:C2UE1ACXX:3:1101:4999:3182 2:N:0:CAGATC\n+CTTATAATTCAAATTTCTAAACTCCTACTCCCTCTCCCTTTATATTTATTTAACACATACTATTCTAACTATATATAAATCATAAATCTTATAAACTTTAA\n++\n+BBBFFFFFFFFFFIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIFFFFFFFFFFFFFFFF\n+@HISEQ:105:C2UE1ACXX:3:1101:16790:3145 2:N:0:CAGATC\n+AACATACCTATAAAAACGCACTACTTTTATATACAAAATCCGTCTCTACTAATACCATAACCAACCTCTATACCACATATAAAAAACAACAAACAATACTC\n++\n+BBBFFFFFFFFBFIIIIF<FFFFFIIIIIFFFIIIIIFIFFFIIIIIIFIFFFFIIIIIIIIIIIIFBBBBFFFFFFBBFFFFFFFFFFBBFFFFFFFFBB\n+@HISEQ:105:C2UE1ACXX:3:1101:18065:3106 2:N:0:CAGATC\n+AAAAACTAAACCCAAAAAAAAAACAATAAAAATAAAATAATAAAAATTATCATAATAAATTCCTAAAAAAAAAAAAAACTTTAAAAAAAAAAAAAAAAAAA\n++\n+BBBFFFFFFFFFFIIIIIIIIIIIIIFIIIIIBFIIIFFFFFIIIFFFFFFFBFFFFFFFFFFBFFFFFFFFFFFFFF'0<<<BFB###############\n+@HISEQ:105:C2UE1ACXX:3:1101:2300:3263 2:N:0:TAGATC\n+AAAAATACAAAAAATAAAAAAAAAAAAAAACATTAAATTTAAAAAAAATTTATTTTTTATTTTATTTTATTTTTATTTTTTTAAATTAAAATAAAAAAAAA\n++\n+BBBFFFFBFFFFFIFFIIIIIIIIIIIFF<'<<<BBBFF0<FFBBBBFB7'0<BB000<'<F<0BBFB'<<BBB0<B<B<B7B<<0'<B'00BBFFFFFFF\n+@HISEQ:105:C2UE1ACXX:3:1101:5605:3427 2:N:0:CAGATC\n+AACCTCTACACAAAAAAATCTAAAAATCTAAAACAAATCCTATAACCGAACCACTTCTTATCTATAAATCTTACTAAAACTCCCCACATCCTATACCTCTC\n++\n+BBBFFFFFFFFFFIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIFFIFIIFFFFFFFFFFFFFFFFFFFFFFFFFFBBFFFFFFFFFFFFFFFFFFFF\n+@HISEQ:105:C2UE1ACXX:3:1101:8129:3589 2:N:0:CAGATC\n+TCTTATCTCTTCAAATTCCCTAATATCAATAAACCCTAACATAACCCGATAAATCAAAAAACTCTTTTATCACAATAAACGTATAATCCTAACTAAAAACT\n++\n+BBBFFFFFFFFFFIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIFFIIIIIIIIIFFFFFFFFFFFFFFFFFFFFBBBFFFFFFFFFFFFFFFF<\n+@HISEQ:105:C2UE1ACXX:3:1101:14304:3866 2:N:0:CAGATC\n+AATTTATTCTTCACTAAAACCCCTTAACCAATACCAACATTTCCACAAAATTCTACCCTCTACAAAAACAACCTATCAAACTCAAAAATCCCCTATATAAA\n++\n+BBBFFFFFFFFFFIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIFFFFFFFFFFFFFFFFFFBBBFFBFFFFFFF\n+@HISEQ:105:C2UE1ACXX:3:1101:12720:4398 2:N:0:CAGATC\n+CTAATTTAACCTTTAAACTCAACAAAAATTAACCTACCTCTACCACTAAAATACTAAAATTAAACATATATATCACCAAACCCAACTTCAATTAAATACAC\n++\n+BBBFFFFFFFFFFIIIIIIIIIIIIIIIIIIIIFIIIIIIIIIIIIIIIIFIIIIIIIIIIIIIIIIIIIIIIIIIIIFFFFFFFFFFFFFFFBFFFFFFB\n+@HISEQ:105:C2UE1ACXX:3:1101:14945:4439 2:N:0:CAGATC\n+ACTCTCTCCTATATTCTTTACCAACATATATAACTTAACTCTCTAATAACCTTAACTATTCCTCACCCTAACCTCCACAAATACTATATATAATACTATAC\n++\n+BBBFFFFFFFFFFIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIBFIIIIIFIIFFFFFFFFFFFFFFFFFFFFFFF\n+@HISEQ:105:C2UE1ACXX:3:1101:8616:4508 2:N:0:CAGATC\n+CTA"..b'IIIIIIIIFFIIIFIFFFFFFFFFFFFFFF<<BBFBBFFFFFBFBBBBFFFFFFFFFBF\n+@HISEQ:105:C2UE1ACXX:3:1101:7272:22581 2:N:0:CAGATC\n+CTAACTCCACCTATAAAAAACCTAAAAAATCGATCAAAATACTCCTCCTCCTTCTATTCCTAAAAAAAATAAAATTCTTTAAAAAATTCTTAATATCATTA\n++\n+BBBFFFFFFFFFFIIIIIIIIIIIIIIIIIIIIIIIIIIFIIIIIIIIIIFFIIFIIIIIFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFF\n+@HISEQ:105:C2UE1ACXX:3:1101:10060:23020 2:N:0:CAGATC\n+CAAAATAATATAAATCTAAAAATAAAAACACCATCCTTACTTCCTTTTAAAAAAAATACTCAAAACTATAAGACTACCCTTTCCTCTTAAAAACCTAATAC\n++\n+BBBFFFFFFFFFFIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIFFFFFFFFFFBBFFFFFFFFFFFFFFFFFFFFFFBFFBFF\n+@HISEQ:105:C2UE1ACXX:3:1101:14440:23104 2:N:0:CAGATC\n+ATATTCTATAAAACACCAAAAATTCCTAAAAACCTCTAAAAACCAACTCCTACAAAAAAAACAACCCACAAAACAAAAATCAACTCCCCAAACCTTAACTT\n++\n+BBBFFFFFFFFFFIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIFIIIIIIIFFFFFFFFFFFFFFFFFFFFBFFFFFFFFFFFFFFFFFFFFB\n+@HISEQ:105:C2UE1ACXX:3:1101:6941:23338 2:N:0:CAGATC\n+CTTATTCATTCCATCGCCTATAACATAAAAACAAAAATAAACATTATCATAACAACCTATAATCAACACCCAAAACCAAATTCAACACACTATAACTCCTA\n++\n+BBBFFFFFFFFFFIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIFIIIIIIIFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFF\n+@HISEQ:105:C2UE1ACXX:3:1101:10069:23622 2:N:0:CAGATC\n+CTTAAAATTCACTTCACATTAACTTTTAAATATTATTCCAATATATTTAAAATAACACTTTAAAAAAAACCTAAATTAAAAAAACTAACCTTCTACAAATA\n++\n+BBBFFFFFFFFFFIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFF\n+@HISEQ:105:C2UE1ACXX:3:1101:14079:24078 2:N:0:CAGATC\n+ATAAAACTAAACTTTCATATATTACTCTTAAATTTTTTTCCTAACTATAAAAAACTTTACAAAATACACCCTATTACTTTCAAACTACCAAAACTACCTAA\n++\n+BBBFFFFFFFFFFIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFF\n+@HISEQ:105:C2UE1ACXX:3:1101:12064:24631 2:N:0:CCGATC\n+AAAAAAACCACCATTCTACAATCCCTTAAAAAAACCCCCAATAAAAAATAAACCCAAACCTAAACAAACAAAAAAACTCAAAAAATTAACTCTAAATATCA\n++\n+BBBFFFFFFFFFFIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIFFFFFFFFFFFFFFFFFBFFFFFFFFFFFFFFFFFFFFFFFBBBFFBFFFFFFFFFF\n+@HISEQ:105:C2UE1ACXX:3:1101:6662:24968 2:N:0:CAGATC\n+CTCCCATACTTAAAAAAATTAAAACCCAAAAACAATTCTACCCTCACAAATACCAAAAAAACGAAACACAATACCATAAACCTAAACAATTAAACGACACC\n++\n+BBBFFFFFFFFFFIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIFFFFBFFFFFFFFBFFFFFFFFFFFFFFFFFFFFFFFFFFFFF\n+@HISEQ:105:C2UE1ACXX:3:1101:11630:24964 2:N:0:TAGATC\n+AAAAAAACATACCAACAACCTTTCAAATACAAAACTCCGTAAAATCTATACTATCTAACAATACCCTAAATCAAAAAAAAAACCAATCCTTAACATCCAAA\n++\n+BBBFFFFFFFFFFIIIIIIIIIIIIIIIIIIIIIIIIIIFFIIIIIIIIIIIIIIIIIIIIFFFFFFFFFFFFFFFFFFFFFBFBFBBFBFFFFFBFFFFF\n+@HISEQ:105:C2UE1ACXX:3:1101:12594:24878 2:N:0:CCGATC\n+ATATAATATTACCTATTTATTTTTATTATTATTATTATTATTATTTATTTATTTATTCTAAACACCTCCCAAAACATTCCAACTTTCTTCATTAAATATAA\n++\n+BBBFFFFFFFFFFIIIIIIIIIIIIIIFFFFFFIIIFFIFIIIFIIIIIIIIIIIFFFFIIIFFFFIIIIIIIIIIFFIIIIFIIFFFFFFFFFFFFFFFF\n+@HISEQ:105:C2UE1ACXX:3:1101:4483:25030 2:N:0:CAGATC\n+CCTAATACTCTATACTAAACAAATAACAAAAAACTTCCTCCTACCTCTTTAAAAAACCCATAAACTTACTCAAATACAAATATAACAAAATAATATAAATC\n++\n+BBBFFFFFFFFFFIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIFIIIIIIIIIFIFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFB\n+@HISEQ:105:C2UE1ACXX:3:1101:12198:25235 2:N:0:CAGATC\n+CACAAAAACAACATACCTCTTAATAATCTTTCAAACTTACACCAAATCTATTTCTATCCTCATCTTCCATTTATAAAAACCAAAACTATACAACCCAATCT\n++\n+BBBFFFFFFFFFFFIFFFFFFBFBFFBBFF<FIBFFIF<BFIIIIIIIIFFFFFBFBFBBFF<B<BFFFBBFIIIIFIIFFFFFFFFFBFBFFBBBBBBB<\n+@HISEQ:105:C2UE1ACXX:3:1101:20477:25084 2:N:0:CATATC\n+AAAACCCAACTCTTCCACCAAAAAAATTACTTTATCTCTAATACTCTTAAAATACCCTATATTATCCTTATACAAAAACACTTAATTAACTTCCTAATTAA\n++\n+BBBFFFFFFFFFFIIIIIIIIIIIIIIIIIIIIIIIIIFIIFIIIIIIIIFIIIIIIIIIIIIIF0<BFFFFFFFFFFFFBBBFFFFFFFFFBBB<<BB70\n+@HISEQ:105:C2UE1ACXX:3:1101:5725:25359 2:N:0:CAGATC\n+ATAACTTAACTCTCTAATAACCTTAACTATTCCTCTCCCTAACCTCCACAAATACTATATATAATACTATACTTCTTAATAAACTTACTTAACATAAACCA\n++\n+BBBFFFFFFFFFFIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIFFFFFFFFFFFFFFFFFFF\n+@HISEQ:105:C2UE1ACXX:3:1101:5502:25591 2:N:0:CAGATC\n+TTCTTAATTCCATCTTTAAACAATAATATTAAAATATTACTTCCCAAAATACAAACCCATATCCATATCCAAAAACTAAACAACCTCTACACCTCAACAAA\n++\n+<<<BBBBBBBBBBBBBBBBB70B00B000<0BBB###################################################################\n' |